mRNA_11768 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171204
Unique NamemRNA_11768
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171204 vs. uniprot
Match: A0A835YKZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ5_9STRA)

HSP 1 Score: 345 bits (885), Expect = 3.480e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 
Query:    1 MDVIPPQLPPRTLRESVNEAVLRDLLERGQDVLRAIAAKSPNPKHQNRDLVGILKKYRARKQHQDRSRSVKYSFAAERSERRLSVDGIVTMQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGGNP 519
            MDVIPPQLPPRTLRESVNEAVLRDLLERGQDVLRAIAAKSPNPKHQNRDLVGILKKYRARKQHQDRSRSVKYSFAAERSERRLSVDGIVTMQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGGNP
Sbjct:    1 MDVIPPQLPPRTLRESVNEAVLRDLLERGQDVLRAIAAKSPNPKHQNRDLVGILKKYRARKQHQDRSRSVKYSFAAERSERRLSVDGIVTMQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGGNP 173
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BLAST of jgi.p|Trimin1|171204 vs. uniprot
Match: A0A835YMS4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.250e-21
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  265 VTMQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGG 513
            VT+QG+DRP+RH++ +G   D VD +N  PT+ SQAL + GRECP L  YV+ R++ L+ +  + G++RD AK V LRAMYGG
Sbjct:    1 VTLQGVDRPIRHALSHGRLRD-VDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 82
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BLAST of jgi.p|Trimin1|171204 vs. uniprot
Match: A0A2J7ZNB7_9CHLO (Putative helicase n=3 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZNB7_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.600e-7
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:  271 MQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGGNP 519
            M G+ R VR  +G   Y D VD +N+ PT+C Q          +L  YV +R + L+ +     +DRD AKG+ LR M+GG+P
Sbjct:    1 MSGMRREVRACLGSELYHD-VDMVNSQPTLCLQYFSARSLPTTYLGEYVRDRASRLREVQEAMRVDRDAAKGLFLRLMFGGSP 82
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BLAST of jgi.p|Trimin1|171204 vs. uniprot
Match: A0A250XQS3_9CHLO (DUF5906 domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQS3_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 9.450e-7
Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:  262 IVTMQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGGN 516
            IV    + R VR ++    Y D VD +N  P +  Q L   G  C  L  YV +R+  L  +   CG+DRD AK + +R +YGG+
Sbjct:  163 IVPFVYMPREVRATLAADRYVD-VDVVNCQPVLLRQRLENAGFACECLAQYVDDRDACLSRVMKACGVDRDAAKQLFVRMVYGGS 246
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171204 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YKZ5_9STRA3.480e-120100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YMS4_9STRA2.250e-2151.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2J7ZNB7_9CHLO1.600e-738.55Putative helicase n=3 Tax=Tetrabaena socialis TaxI... [more]
A0A250XQS3_9CHLO9.450e-736.47DUF5906 domain-containing protein (Fragment) n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:579163..579681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171204|e_gw1.80.86.1
DescriptionVirulence-associated protein E
COG categoryS
Max annot lvl10239|Viruses
EggNOG OGs4QCHV@10239|Viruses
Evalue0.000431
Seed ortholog543939.V13_SPTNK
Hectar predicted targeting categoryother localisation
TranscriptId171526
TrackFilteredModels1
ProteinId171204
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171204gene_11768Tribonema minus UTEX_B_3156 geneContig_80 579163..579681 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11768_1exon_11768_1Tribonema minus UTEX_B_3156 exonContig_80 579163..579681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11768CDS_11768Tribonema minus UTEX_B_3156 CDSContig_80 579163..579681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171204Trimin1|171204|e_gw1.80.86.1Tribonema minus UTEX_B_3156 polypeptideContig_80 579163..579681 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11768 ID=mRNA_11768|Name=jgi.p|Trimin1|171204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_80:579163..579681- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTCATCCCCCCCCAGCTGCCGCCGCGCACGCTGCGCGAGTCCGT
CAACGAGGCCGTACTCAGAGACCTGCTGGAGCGCGGCCAGGACGTGCTGA
GGGCAATCGCGGCCAAGAGCCCCAACCCCAAGCACCAGAACAGGGACCTC
GTTGGCATACTCAAGAAGTACCGCGCCCGCAAGCAGCACCAGGACCGCAG
CCGCAGCGTCAAGTACTCGTTCGCTGCAGAGCGGTCCGAGAGGCGGCTGA
GCGTAGACGGCATCGTGACTATGCAGGGCATCGACAGGCCCGTCCGGCAC
TCCATGGGGTACGGAGAGTACGGCGACCTCGTCGACCAGATCAACGCGCA
TCCCACCATCTGCTCCCAGGCACTCCATAAGCTCGGCAGGGAGTGCCCCT
TCCTGGACTTGTACGTCGCCGAACGCGAAACCTGGCTGCAAGCCATCACA
GCGGAGTGCGGCATCGACCGCGACGGCGCCAAGGGCGTCATGCTGCGCGC
GATGTACGGAGGCAACCCG
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protein sequence of jgi.p|Trimin1|171204

>Trimin1|171204|e_gw1.80.86.1 ID=Trimin1|171204|e_gw1.80.86.1|Name=jgi.p|Trimin1|171204|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
MDVIPPQLPPRTLRESVNEAVLRDLLERGQDVLRAIAAKSPNPKHQNRDL
VGILKKYRARKQHQDRSRSVKYSFAAERSERRLSVDGIVTMQGIDRPVRH
SMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAIT
AECGIDRDGAKGVMLRAMYGGNP
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mRNA from alignment at Contig_80:579163..579681-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11768 ID=mRNA_11768|Name=jgi.p|Trimin1|171204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_80:579163..579681- (Tribonema minus UTEX_B_3156 )
ATGGATGTCATCCCCCCCCAGCTGCCGCCGCGCACGCTGCGCGAGTCCGT
CAACGAGGCCGTACTCAGAGACCTGCTGGAGCGCGGCCAGGACGTGCTGA
GGGCAATCGCGGCCAAGAGCCCCAACCCCAAGCACCAGAACAGGGACCTC
GTTGGCATACTCAAGAAGTACCGCGCCCGCAAGCAGCACCAGGACCGCAG
CCGCAGCGTCAAGTACTCGTTCGCTGCAGAGCGGTCCGAGAGGCGGCTGA
GCGTAGACGGCATCGTGACTATGCAGGGCATCGACAGGCCCGTCCGGCAC
TCCATGGGGTACGGAGAGTACGGCGACCTCGTCGACCAGATCAACGCGCA
TCCCACCATCTGCTCCCAGGCACTCCATAAGCTCGGCAGGGAGTGCCCCT
TCCTGGACTTGTACGTCGCCGAACGCGAAACCTGGCTGCAAGCCATCACA
GCGGAGTGCGGCATCGACCGCGACGGCGCCAAGGGCGTCATGCTGCGCGC
GATGTACGGAGGCAACCCG
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Coding sequence (CDS) from alignment at Contig_80:579163..579681-

>mRNA_11768 ID=mRNA_11768|Name=jgi.p|Trimin1|171204|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_80:579163..579681- (Tribonema minus UTEX_B_3156 )
ATGGATGTCATCCCCCCCCAGCTGCCGCCGCGCACGCTGCGCGAGTCCGT
CAACGAGGCCGTACTCAGAGACCTGCTGGAGCGCGGCCAGGACGTGCTGA
GGGCAATCGCGGCCAAGAGCCCCAACCCCAAGCACCAGAACAGGGACCTC
GTTGGCATACTCAAGAAGTACCGCGCCCGCAAGCAGCACCAGGACCGCAG
CCGCAGCGTCAAGTACTCGTTCGCTGCAGAGCGGTCCGAGAGGCGGCTGA
GCGTAGACGGCATCGTGACTATGCAGGGCATCGACAGGCCCGTCCGGCAC
TCCATGGGGTACGGAGAGTACGGCGACCTCGTCGACCAGATCAACGCGCA
TCCCACCATCTGCTCCCAGGCACTCCATAAGCTCGGCAGGGAGTGCCCCT
TCCTGGACTTGTACGTCGCCGAACGCGAAACCTGGCTGCAAGCCATCACA
GCGGAGTGCGGCATCGACCGCGACGGCGCCAAGGGCGTCATGCTGCGCGC
GATGTACGGAGGCAACCCG
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