mRNA_11733 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171206
Unique NamemRNA_11733
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A835YKX5_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX5_9STRA)

HSP 1 Score: 149 bits (376), Expect = 9.200e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLVKLKRV 216
            DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLVKLKRV
Sbjct:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLVKLKRV 72
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: D8LMR4_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.570e-19
Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLVK 204
            DL GF MEHAG   R L+ +V++VS  NYPE+M+ C+++NAPW+F+A++KG++PLMSA T  KV+++K
Sbjct:  335 DLSGFGMEHAGTIGRSLISQVLAVSQDNYPEMMEKCYIINAPWVFYALWKGLQPLMSAGTAKKVQMLK 402
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.160e-19
Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLVK 204
            DL GF MEHAG   R L+ +V++VS  NYPE+M+ C+++NAPW+F+A++KG++PLMSA T  KV+++K
Sbjct:  417 DLSGFGMEHAGTIGRSLISQVLAVSQDNYPEMMEKCYIINAPWVFYALWKGLQPLMSAGTANKVQMLK 484
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A7S3USY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY2_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.550e-16
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 198
            DL GF +EHA    R+++  VM+V+ ANYPE+M  C +VNAPW+FF +++ +KP++S H+  KVK+
Sbjct:   10 DLGGFGLEHAQARGREILRVVMAVTTANYPEMMHRCIIVNAPWVFFTLWRVIKPMLSEHSANKVKV 75
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A504Y962_FASGI (Phospholipid transport protein n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504Y962_FASGI)

HSP 1 Score: 61.2 bits (147), Expect = 2.150e-10
Identity = 25/66 (37.88%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 198
            D++G  ++H  PS   ++   ++V  +NYPE++ TCF+VNAP +F  ++  VKPL+S  T  K+++
Sbjct:   24 DMQGLGLKHMSPSLLTIVSESVTVLESNYPEVLGTCFVVNAPPLFSRLYAFVKPLLSRETQEKIQI 89
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A7S3E3P0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E3P0_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 8.760e-10
Identity = 26/67 (38.81%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLV 201
            D++G S++     ++ +M +V   +  NYPE+M  C ++NAP+IF  +F  VKP++SA T +K+K+V
Sbjct:  208 DVKGISLKMLTKESQRIMKKVTGFTQDNYPEMMGNCIIINAPYIFKVIFNIVKPMLSARTQSKIKVV 274
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A2H1CNT7_FASHE (CRAL/TRIO domain protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CNT7_FASHE)

HSP 1 Score: 60.5 bits (145), Expect = 2.890e-9
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVK 195
            D++G  ++H  PS   ++   ++V  +NYPE++ TCF+VNAP +F  ++  VKPL+S  T  K++
Sbjct:  152 DMQGLGLKHMSPSLLTIVSESVTVLESNYPEVLGTCFVVNAPPLFSRLYAFVKPLLSRETQEKIQ 216
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A183B215_9TREM (CRAL-TRIO domain-containing protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183B215_9TREM)

HSP 1 Score: 60.8 bits (146), Expect = 2.970e-9
Identity = 25/66 (37.88%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 198
            D++G  ++H  PS   ++   ++V  +NYPE++ TCF+VNAP +F  ++  +KPL+S  T  KV++
Sbjct:  123 DMQGLGLKHMSPSLLTIVSESVTVLESNYPEVLGTCFVVNAPPLFSRLYAFIKPLLSRETQEKVQV 188
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A4E0S364_FASHE (SEC14 protein 2 n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0S364_FASHE)

HSP 1 Score: 61.2 bits (147), Expect = 3.060e-9
Identity = 25/66 (37.88%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 198
            D++G  ++H  PS   ++   ++V  +NYPE++ TCF+VNAP +F  ++  VKPL+S  T  K+++
Sbjct:  152 DMQGLGLKHMSPSLLTIVSESVTVLESNYPEVLGTCFVVNAPPLFSRLYAFVKPLLSRETQEKIQI 217
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BLAST of jgi.p|Trimin1|171206 vs. uniprot
Match: A0A8J9YBS6_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YBS6_9NEOP)

HSP 1 Score: 60.8 bits (146), Expect = 4.030e-9
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 DLRGFSM-EHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 198
            DL GFSM ++A   A +L+  ++ +  ANYPE++ TCF+VNAP +F   F  +K  M  +T++K+++
Sbjct:  141 DLEGFSMRQYAWKPAAELVFTLLQIYEANYPEILKTCFIVNAPKVFSLAFSVIKKFMHDNTISKIRI 207
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKX5_9STRA9.200e-46100.00CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
D8LMR4_ECTSI1.570e-1954.41CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNT5_9PHAE2.160e-1954.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3USY2_HETAK1.550e-1648.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A504Y962_FASGI2.150e-1037.88Phospholipid transport protein n=1 Tax=Fasciola gi... [more]
A0A7S3E3P0_9CHLO8.760e-1038.81Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A2H1CNT7_FASHE2.890e-938.46CRAL/TRIO domain protein n=1 Tax=Fasciola hepatica... [more]
A0A183B215_9TREM2.970e-937.88CRAL-TRIO domain-containing protein n=1 Tax=Echino... [more]
A0A4E0S364_FASHE3.060e-937.88SEC14 protein 2 n=1 Tax=Fasciola hepatica TaxID=61... [more]
A0A8J9YBS6_9NEOP4.030e-940.30(lesser marbled fritillary) hypothetical protein (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:228471..228689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171206|e_gw1.80.5.1
Descriptionmacromolecule localization
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Evalue2.57e-20
Seed ortholog2880.D8LMR4
Hectar predicted targeting categoryother localisation
TranscriptId171528
TrackFilteredModels1
ProteinId171206
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171206gene_11733Tribonema minus UTEX_B_3156 geneContig_80 228471..228689 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11733_1exon_11733_1Tribonema minus UTEX_B_3156 exonContig_80 228471..228689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11733CDS_11733Tribonema minus UTEX_B_3156 CDSContig_80 228471..228689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171206Trimin1|171206|e_gw1.80.5.1Tribonema minus UTEX_B_3156 polypeptideContig_80 228471..228689 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11733 ID=mRNA_11733|Name=jgi.p|Trimin1|171206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_80:228471..228689- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATCTGCGGGGGTTCAGCATGGAACACGCTGGGCCATCTGCAAGGGACCT
CATGGGTCGTGTCATGAGCGTTTCCTGCGCCAACTACCCGGAACTCATGG
ACACGTGCTTTCTGGTCAACGCGCCGTGGATATTCTTTGCCGTGTTCAAG
GGGGTCAAGCCTCTCATGAGCGCGCACACGGTGGCCAAGGTGAAGTTGGT
GAAGTTAAAGCGTGTTTGA
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protein sequence of jgi.p|Trimin1|171206

>Trimin1|171206|e_gw1.80.5.1 ID=Trimin1|171206|e_gw1.80.5.1|Name=jgi.p|Trimin1|171206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp
DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFK
GVKPLMSAHTVAKVKLVKLKRV*
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mRNA from alignment at Contig_80:228471..228689-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11733 ID=mRNA_11733|Name=jgi.p|Trimin1|171206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_80:228471..228689- (Tribonema minus UTEX_B_3156 )
GATCTGCGGGGGTTCAGCATGGAACACGCTGGGCCATCTGCAAGGGACCT
CATGGGTCGTGTCATGAGCGTTTCCTGCGCCAACTACCCGGAACTCATGG
ACACGTGCTTTCTGGTCAACGCGCCGTGGATATTCTTTGCCGTGTTCAAG
GGGGTCAAGCCTCTCATGAGCGCGCACACGGTGGCCAAGGTGAAGTTGGT
GAAGTTAAAGCGTGTTTGA
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Coding sequence (CDS) from alignment at Contig_80:228471..228689-

>mRNA_11733 ID=mRNA_11733|Name=jgi.p|Trimin1|171206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_80:228471..228689- (Tribonema minus UTEX_B_3156 )
GATCTGCGGGGGTTCAGCATGGAACACGCTGGGCCATCTGCAAGGGACCT
CATGGGTCGTGTCATGAGCGTTTCCTGCGCCAACTACCCGGAACTCATGG
ACACGTGCTTTCTGGTCAACGCGCCGTGGATATTCTTTGCCGTGTTCAAG
GGGGTCAAGCCTCTCATGAGCGCGCACACGGTGGCCAAGGTGAAGTTGGT
GAAGTTAAAGCGTGTTTGA
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