mRNA_11728 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A836C926_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C926_9STRA) HSP 1 Score: 273 bits (698), Expect = 3.060e-92 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query: 82 MPRGVGVVRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQGPRK 486
MPRGVGVVRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQGPRK
Sbjct: 1 MPRGVGVVRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQGPRK 135
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S4A6G0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6G0_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.510e-28 Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 1
Query: 97 GVVRKLAEHGVAAMQPRIIN------GRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQ 474
GV++KLA+HG AA++PR + W +PL+SRR+AAV RK+A+ +GT+G+F GGW WDP AP V P KGH R RA R ++ L +L E +K++ R+P PG E LLKRL R+
Sbjct: 4 GVIKKLAQHGAAALKPRKVPTAPGQVNPWRRPLVSRREAAVARKQALRDGTFGTFDPAKGGWLREWDPVRAPRVLIPPKGHKRDRTRAERFRNVEARLRDMPRLIEEHRKTVQARKPPPGVETLLKRLVRRR 135
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S2UWN1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN1_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.530e-25 Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 112 LAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETG-GWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQGPR 483
LA+ G A PR +NGR+ +PLI +R+AA RK AI GTYGSFS ETG GW+P+WD A + RP KGHL QR+R R KI++AL + + + K++ +P+PG E L K+++ + R
Sbjct: 22 LAKLGKEAFMPRFMNGRFRRPLIGKRRAANIRKYAIKNGTYGSFSPETGVGWDPAWDKPKAVWIMRPPKGHLRQRDRQQRFEKIEKALAEAPEKIQKYKQARKDDKPQPGLETLWKKITGKANKR 146
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S2S2H4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2H4_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.080e-23 Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = 1
Query: 106 RKLAEHGVAAMQP-RIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQG 477
R LAE G AA++P ++ +GRW + +S R AA+ RK+AI++G+YGSF GGW+P+WD PIV +P K H H+RNR R I + L +Q + ++ + +P+PG +L KRL + +G
Sbjct: 13 RLLAELGSAALRPTKLADGRWRKAQVSSRMAAMLRKQAIMDGSYGSFVPGQGGWDPAWDKFKRPIVRKPFKKHGHERNRKDRFEAIQKKLSQQPEKIAAMRQDKIDAKPKPGILSLYKRLMNMRG 137
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: F0Y3A9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3A9_AURAN) HSP 1 Score: 104 bits (259), Expect = 9.580e-23 Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 76 FKMPRG-----VGVVRKLAEHGVAAMQPRIINGR----WCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQ 474
F P+G V+RKLA+HG AA++P+ + G W +PL+SRRQAA RK+A+ GT+G+F A GGW +WD AP V K H +R RA R A ++ L K + ++ R+P PG E+L+KRL+ R+
Sbjct: 837 FYSPKGCNKVSASVIRKLAKHGAAALKPQRVGGPGANPWRRPLLSRRQAADARKQALASGTFGTFDASRGGWLEAWDAVAAPRVLTAPKLHKRERTRADRFASVEANLADMPKKIAAYRAAVDARKPPPGVESLMKRLTRRR 978
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S3H3W9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3W9_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.220e-22 Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 1
Query: 76 FKMPRGVGVVRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKR 459
F +PR + R L HG A+ P ++ GR+ PL+S+R AA RK+A++EGT+G F GGW+P WD + RPHKGHL +R R RA KI A+ + + ++ + RRP+ + R
Sbjct: 14 FTIPRSI---RMLTLHGGDALLPAMVKGRYIAPLVSKRVAADIRKRALIEGTFGEFVPNEGGWDPKWDIPKTMHILRPHKGHLRERTREKRANKITTAMAGMPERIAKYEQEVADRRPKKDIHYMFTR 138
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S2ATP3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP3_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.510e-21 Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 1
Query: 103 VRKLAEHGVAAMQPRII-NGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQGPRK 486
+R LA++G A QP+ + +G+W +P+ISRR AA R ++ EGT+GSFS TGGW+ SWD P + RP K R R R +I + +QD E +K+ + +P PG + L KRL + +G K
Sbjct: 15 IRALAKYGPDAFQPKKLQDGKWAKPMISRRMAADLRSHSLREGTWGSFSPITGGWDSSWDSYKRPKIRRPLKTSKRDRTRDDRFERIQGKMGEQDAKRAEYRKARVDAKPPPGIQTLYKRLLAMKGGSK 143
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S0AE13_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AE13_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.670e-21 Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1
Query: 103 VRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETG-GWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALLKRLSSRQG 477
VR L HG A +P+ + W +P +S R+AAV RK A+ +GTYG+F +TG GW+P WD RP K +R R +RA +I++ L + D+ +K+ L ++PEPG E L KR++ G
Sbjct: 33 VRLLKRHGEEAFKPQFVKESWRKPAVSGREAAVLRKAAVRDGTYGAFDPQTGRGWDPLWDKPGKVSSIRPPKETKRERTRESRAQRIEQLLEQADEKIESYRKAQLEKKPEPGIENLFKRMTKGLG 158
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A7S4KCW7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCW7_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.360e-19 Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 88 RGVGVVRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETG-GWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQD---KLYLEAKKSLLHRRPEPGFEALLKRLS 465
R +R L HG A++P+ +N +W +PLIS R+AAV RK AI +GTYGSF E G GWNP WD R K +R R RA+KI+ L + D + Y K++L +PEPG L+K+++
Sbjct: 11 RHKAAIRMLIRHGEQALRPQFVNEKWRRPLISMRKAAVIRKGAIKDGTYGSFDPENGKGWNPMWDTPRKITSLRLPKETKRERTREARASKIESLLEQADDRIETYRLEKEAL---KPEPGVLNLIKKMN 137
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Match: A0A8K1FQF7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQF7_PYTOL) HSP 1 Score: 83.6 bits (205), Expect = 1.650e-17 Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 1
Query: 103 VRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTYGSFSAETGGWNPSWDPAPAPIVARPHKGHLHQRNRATRAAKIDEALLKQDKLYLEAKKSLLHRRPEPGFEALL 453
+R A AAM+P ++ G+W QPL+SRR+ A+ +K A G G + GGW WD V RP KGHLHQRN R K+ AL E KK++ +P G + L
Sbjct: 8 LRMSAAEAEAAMKPHLVEGKWKQPLLSRRKIAMVKKHAEQNGLVGQWIEGQGGWLEGWDRPQKHHVMRPPKGHLHQRNEFERVKKVQAALANMPTKIAEHKKAVKQAKPLKGLDKWL 124 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|92811 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11728 ID=mRNA_11728|Name=jgi.p|Trimin1|92811|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=521bp|location=Sequence derived from alignment at Contig_80:195408..196430- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGTGTCATCGTTTCTGCTTCTGGTGAGAGTTGAAGCAGTAAAACTCGCGGback to top protein sequence of jgi.p|Trimin1|92811 >Trimin1|92811|CE92810_159 ID=Trimin1|92811|CE92810_159|Name=jgi.p|Trimin1|92811|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp MPRGVGVVRKLAEHGVAAMQPRIINGRWCQPLISRRQAAVQRKKAIVEGTback to top mRNA from alignment at Contig_80:195408..196430- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11728 ID=mRNA_11728|Name=jgi.p|Trimin1|92811|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1023bp|location=Sequence derived from alignment at Contig_80:195408..196430- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_80:195408..196430- >mRNA_11728 ID=mRNA_11728|Name=jgi.p|Trimin1|92811|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_80:195408..196430- (Tribonema minus UTEX_B_3156 )back to top |