mRNA_1171 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|1512
Unique Name	mRNA_1171
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A835ZLB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB4_9STRA)

HSP 1 Score: 441 bits (1133), Expect = 3.120e-154
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 2

Query:   59 MARQVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAAPPSRXXXXXXXXXGLSLPVPXXXXXXXXXXXXXXXXPAGKADAVAAPEERRFAPHASSGTMVMAD 820
            MARQVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAAPPSRXXXXXXXXXGLSLPVPXXXXXXXXXXXXXXXXPAGKADAVAAPEERRFAPHASSGTMVMAD
Sbjct:    1 MARQVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAAPPSRXXXXXXXXXGLSLPVPXXXXXXXXXXXXXXXXPAGKADAVAAPEERRFAPHASSGTMVMAD 254

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A835Z2H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2H5_9STRA)

HSP 1 Score: 261 bits (668), Expect = 4.160e-83
Identity = 115/186 (61.83%), Postives = 157/186 (84.41%), Query Frame = 2

Query:   71 VVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAAP 628
            ++VG+WQD+S  +GE +D+++ADYLIGA++  SPY+QD+IF RL+RH+APGG L+++GMQP+PD+AP  A+IV EV RLRDAC++LAGHRPYRE+P+DWVERHL+ AG AVT +RR+PIL+SEGSI+RQLD+A+R+L +  DRD+A+A+ERHI  +  R+   C+ VRGG IQLGFDY++ AE  P
Sbjct:   78 IIVGNWQDESFQEGEIYDTILADYLIGAIDGFSPYYQDEIFDRLKRHLAPGGTLFIIGMQPVPDSAPHPANIVTEVARLRDACILLAGHRPYREFPLDWVERHLKKAGFAVTLSRRMPILHSEGSIRRQLDVASRKLPYFEDRDLAAAMERHIAAVGARIVSTCSCVRGGRIQLGFDYVVAAEPLP 263

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: D7FMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ8_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 4.310e-69
Identity = 99/188 (52.66%), Postives = 152/188 (80.85%), Query Frame = 2

Query:   68 QVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRD--VASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAA 625
            ++VVG+W+D+  L+G  FD+V+ADYL+GA++  +PY+QDQ+F+RL+RH+APGGR+Y+VGMQPLPD   GAA++V E  RLRD+C++LAGHRPYREYP+DW+ R ++ +G+ VT+A+++P+LY+  +++RQLD+A+R+L  I+  D  +A+ALERHI D+  R++   A   GG +++GFDY++ AE A
Sbjct:  131 EIVVGNWRDEKFLEGRVFDTVLADYLVGAIDGFAPYYQDQVFERLKRHVAPGGRIYLVGMQPLPDHPGGAAELVCEAARLRDSCILLAGHRPYREYPLDWITRQMKKSGMVVTSAKKMPVLYAPHTVKRQLDVASRKLPIIAATDPKLAAALERHISDLDGRVRKELAGA-GGRVEVGFDYVVAAELA 317

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A7S2XXT9_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXT9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.190e-58
Identity = 92/186 (49.46%), Postives = 136/186 (73.12%), Query Frame = 2

Query:   71 VVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAA-DIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAA 625
            VV+G+W D  LL+G  FD+V+ADYLIGA++  SPY QD +  RL++H+APG RLY++G++PLPD +   A DIV EV R+RDAC++LAGHR YRE+P++W ERHL  +G  V  +++LPI+YS  SI+RQ+D+A+R+L F  D+ + S + +HI  +  R++   ++     ++LGFDYII AE +
Sbjct:  102 VVLGNWDDPDLLKGMTFDTVLADYLIGAMDGFSPYKQDLMLPRLKQHMAPGARLYIIGLEPLPDKSQNPAEDIVCEVRRVRDACILLAGHRCYREFPLEWTERHLTGSGFRVVESKKLPIMYSFQSIKRQIDVASRKLPFFKDKALVSVMRQHIDQLTERVREAVSSTPNSRVRLGFDYIISAEVS 287

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: B8CFP8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFP8_THAPS)

HSP 1 Score: 188 bits (477), Expect = 7.190e-54
Identity = 87/215 (40.47%), Postives = 135/215 (62.79%), Query Frame = 2

Query:   26 ISENSLTISVAMARQVVVGSWQD-----------------KSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAE 619
            + E + ++ +A    V++G+W+D                 K LL+G +FD+++ADYL+GA++  SPYFQD I QRL  H+APGGRLY++G+QP+PD   G AD+   + ++RDAC+ LA HR YREYP+DW+ERH+R AGL V   R+ PI Y   ++ RQ+++   +L     + +A  + + +  +++  K + A    G I LGFDY++VAE
Sbjct:  112 VIEEAESLGIADKGDVLIGNWKDGVDKNGNIEFDSDAGGKKLLLEGREFDTILADYLVGAVDGFSPYFQDLIIQRLVPHLAPGGRLYIIGLQPIPDNVQGDADVFCRITKVRDACIKLANHRCYREYPVDWIERHVRRAGLRVVETRQYPIRYDHATMLRQINVGRSKLKLFPSKGLADEMGKVLDSLEKESKEVTAKQADGRITLGFDYVVVAE 326

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A3M1D405_9DELT (Class I SAM-dependent methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D405_9DELT)

HSP 1 Score: 184 bits (466), Expect = 2.820e-53
Identity = 95/187 (50.80%), Postives = 127/187 (67.91%), Query Frame = 2

Query:   62 ARQVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPG-AADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAE 619
            A ++V G+W D  LL GE++D+V+ADYL+GAL+  SPYFQD+IF RLR H+A  GRLYVVG+ P+ D   G A DIV  + RLRDAC++LAGHR YREYP+DWV RHL AAG  V   RR+PI+Y    I  QLD+  R+L    D D+A A  R + +++R  +  C   R G ++ G D+++ AE
Sbjct:   62 ADRLVTGNWTDPELLAGERYDTVLADYLLGALDGFSPYFQDRIFHRLRPHVA--GRLYVVGLAPIDDEGGGEAGDIVRAIARLRDACILLAGHRCYREYPLDWVHRHLVAAGFRVIHRRRVPIVYGPRWIDGQLDVCLRKLPCFPDPDLAEATRRRVEELRRTARDACD--RLGGLRFGHDWLVAAE 244

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A7S1UJN8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN8_9STRA)

HSP 1 Score: 182 bits (463), Expect = 9.200e-52
Identity = 91/192 (47.40%), Postives = 128/192 (66.67%), Query Frame = 2

Query:   68 QVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASA----------LERHIGDIQRRMKGICAAVRGG-HIQLGFDYII 610
            +VV+G+W D++ L+GE +D ++ADYLIGA++  SPY QD IF+RL+RH+AP G +Y+VG++P+PDTA GAAD++ EV RLRDA ++LAGHR YREYP+ W+ R  R AG  V  +   PILYS  SI RQLD+  R+L +I  +  +S           L+R I D         +AV+    I+ GFDY++
Sbjct:  112 KVVIGNWDDETFLEGEVYDVILADYLIGAMDGFSPYTQDLIFERLKRHLAPDGVIYIVGLEPIPDTAEGAADVICEVRRLRDAMILLAGHRCYREYPLTWIYRQCRRAGFEVLESTTFPILYSRASITRQLDVGRRKLPYIRAKHGSSTAIAMGQACEMLQRRIDDATNHNTSKTSAVKTDTRIRFGFDYVV 303

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A7S3GT58_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT58_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.000e-51
Identity = 84/201 (41.79%), Postives = 134/201 (66.67%), Query Frame = 2

Query:   20 ELISENSLTISVAMARQVVVGSWQDKSLLQG-EQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAE 619
            +++ E+ +   +     V+VG+W D++  +G   FD+++ADYLIGA++  SPY QD+I  +L+RH+ P GRLY++GM P+PD      +I+ E+ R RDAC++L GHRPYRE+P+DW+ RHL +A  +VT ++   IL+SE S  RQ+ +   +LS + + D+ S +E+++ D++ R +    A  GG I L FDY+I AE
Sbjct:   59 QMMKESGVAAQMRPQDSVIVGNWMDEAFCEGLGTFDTILADYLIGAVDGFSPYQQDEILVKLKRHLTPEGRLYIIGMNPIPDEPAPPGNIISEIRRARDACILLGGHRPYREFPLDWMRRHLTSAQFSVTGSKNFTILHSEDSAVRQIRVGQSKLSLMDNADLRSGMEKYMVDLEARTRQAVRAA-GGRIPLSFDYVISAE 258

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BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A7S1UJN4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN4_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.940e-51
Identity = 91/192 (47.40%), Postives = 128/192 (66.67%), Query Frame = 2

Query:   68 QVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASA----------LERHIGDIQRRMKGICAAVRGG-HIQLGFDYII 610
            +VV+G+W D++ L+GE +D ++ADYLIGA++  SPY QD IF+RL+RH+AP G +Y+VG++P+PDTA GAAD++ EV RLRDA ++LAGHR YREYP+ W+ R  R AG  V  +   PILYS  SI RQLD+  R+L +I  +  +S           L+R I D         +AV+    I+ GFDY++
Sbjct:  141 KVVIGNWDDETFLEGEVYDVILADYLIGAMDGFSPYTQDLIFERLKRHLAPDGVIYIVGLEPIPDTAEGAADVICEVRRLRDAMILLAGHRCYREYPLTWIYRQCRRAGFEVLESTTFPILYSRASITRQLDVGRRKLPYIRAKHGSSTAIAMGQACEMLQRRIDDATNHNTSKTSAVKTDTRIRFGFDYVV 332

[Close]

BLAST of jgi.p|Trimin1|1512 vs. uniprot
Match: A0A7S1Y0Y4_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Y4_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.690e-51
Identity = 91/192 (47.40%), Postives = 128/192 (66.67%), Query Frame = 2

Query:   68 QVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRRHIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYPMDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVASA----------LERHIGDIQRRMKGICAAVRGG-HIQLGFDYII 610
            +VV+G+W D++ L+GE +D ++ADYLIGA++  SPY QD IF+RL+RH+AP G +Y+VG++P+PDTA GAAD++ EV RLRDA ++LAGHR YREYP+ W+ R  R AG  V  +   PILYS  SI RQLD+  R+L +I  +  +S           L+R I D         +AV+    I+ GFDY++
Sbjct:  167 KVVIGNWDDETFLEGEVYDVILADYLIGAMDGFSPYTQDLIFERLKRHLAPDGVIYIVGLEPIPDTAEGAADVICEVRRLRDAMILLAGHRCYREYPLTWIYRQCRRAGFEVLESTTFPILYSRASITRQLDVGRRKLPYIRAKHGSSTAIAMGQACEMLQRRIDDATNHNTSKTSAVKTDTRIRFGFDYVV 358

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|1512 vs. uniprot

BLAST of jgi.p|Trimin1|1512 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZLB4_9STRA	3.120e-154	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z2H5_9STRA	4.160e-83	61.83	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FMQ8_ECTSI	4.310e-69	52.66	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2XXT9_9STRA	1.190e-58	49.46	Hypothetical protein n=2 Tax=Fibrocapsa japonica T...	[more]
B8CFP8_THAPS	7.190e-54	40.47	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A3M1D405_9DELT	2.820e-53	50.80	Class I SAM-dependent methyltransferase n=1 Tax=De...	[more]
A0A7S1UJN8_9STRA	9.200e-52	47.40	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A7S3GT58_9STRA	1.000e-51	41.79	Hypothetical protein (Fragment) n=2 Tax=Spumella e...	[more]
A0A7S1UJN4_9STRA	1.940e-51	47.40	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A7S1Y0Y4_9STRA	3.690e-51	47.40	Hypothetical protein n=6 Tax=Phaeomonas parva TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:1893298..1897128 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|1512\|CE1511_30
Max annot lvl	2759\|Eukaryota
EggNOG OGs	28I17@1\|root,2RZZT@2759\|Eukaryota
Evalue	1.18e-70
Seed ortholog	2880.D7FMQ8
Hectar predicted targeting category	other localisation
TranscriptId	1834
Track	FilteredModels1
ProteinId	1512

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|1512	gene_1171	Tribonema minus UTEX_B_3156	gene	Contig_1 1893298..1897128 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|1512	Trimin1\|1512\|CE1511_30	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 1893429..1897070 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1171_6	exon_1171_6	Tribonema minus UTEX_B_3156	exon	Contig_1 1893298..1893705 -
exon_1171_5	exon_1171_5	Tribonema minus UTEX_B_3156	exon	Contig_1 1894150..1894197 -
exon_1171_4	exon_1171_4	Tribonema minus UTEX_B_3156	exon	Contig_1 1894948..1895010 -
exon_1171_3	exon_1171_3	Tribonema minus UTEX_B_3156	exon	Contig_1 1895613..1895752 -
exon_1171_2	exon_1171_2	Tribonema minus UTEX_B_3156	exon	Contig_1 1896375..1896488 -
exon_1171_1	exon_1171_1	Tribonema minus UTEX_B_3156	exon	Contig_1 1896948..1897128 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_1171	UTR3_1171	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_1 1893298..1893428 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1171	CDS_1171	Tribonema minus UTEX_B_3156	CDS	Contig_1 1896948..1897070 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_1171	UTR5_1171	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_1 1897071..1897128 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:1893298..1897128-
coding sequence from alignment at Contig_1:1893298..1897128-

spliced messenger RNA

>mRNA_1171 ID=mRNA_1171|Name=jgi.p|Trimin1|1512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_1:1893298..1897128- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTGTCCCTACAGCACACTGAACTCATCAGTGAGAATTCATTGACAATAT
CCGTTGCCATGGCGCGCCAGGTCGTGGTGGGCAGCTGGCAGGACAAGTCC
CTCCTTCAGGGCGAGCAGTTTGACTCTGTGATTGCGGACTACCTCATCGG
CGCCCTCAACATACACAGCCCGTACTTCCAGGACCAAATATTCCAGAGGC
TGCGGCGACACATTGCGCCGGGCGGGCGGCTATACGTTGTGGGCATGCAG
CCGCTGCCCGATACGGCGCCAGGGGCGGCGGACATTGTCATCGAGGTCGG
CCGCCTGCGCGACGCGTGCCTGATGCTGGCAGGCCACCGGCCGTACCGGG
AGTACCCCATGGACTGGGTGGAGCGTCACCTGCGTGCCGCGGGCCTCGCC
GTCACTGCGGCGCGGCGCCTGCCAATCCTGTATAGCGAGGGCAGCATTCA
GCGCCAGCTGGACATGGCGGCACGGCGACTCTCCTTCATCTCCGACAGGG
ATGTGGCATCTGCGCTGGAAAGGCACATCGGCGACATACAGCGAAGGATG
AAGGGCATCTGCGCCGCTGTGCGAGGAGGCCACATCCAGTTGGGCTTTGA
CTACATCATCGTCGCGGAGGCAGCGCCCCCCTCGCGCCCCCCCTCGCGCC
CCCCTTCGCGTCCCGGCCTCTCCCTGCCGGTGCCGCCGCCGCCCGCTGCC
GCTGCCGCCGGCACTGCCGCAGCAGCAGCAGCGCCCGCAGGCAAAGCCGA
TGCCGTCGCTGCGCCGGAAGAACGGAGGTTCGCGCCGCACGCCAGCTCCG
GCACAATGGTGATGGCCGACTGAGCCAGTGCCGTTCGCGCAAGCTCAAGC
CTGAAGTGTGGCTGCCGCGCGCCGTCGGCGCCAGCAGCATTGCGTCTCAT
CGCGCGTCACTCACCGCACGCAGCCTGTGCTGGTGTTGCCCCTTGCCCCC
CCCC

protein sequence of jgi.p|Trimin1|1512

>Trimin1|1512|CE1511_30 ID=Trimin1|1512|CE1511_30|Name=jgi.p|Trimin1|1512|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=255bp
MARQVVVGSWQDKSLLQGEQFDSVIADYLIGALNIHSPYFQDQIFQRLRR
HIAPGGRLYVVGMQPLPDTAPGAADIVIEVGRLRDACLMLAGHRPYREYP
MDWVERHLRAAGLAVTAARRLPILYSEGSIQRQLDMAARRLSFISDRDVA
SALERHIGDIQRRMKGICAAVRGGHIQLGFDYIIVAEAAPPSRPPSRPPS
RPGLSLPVPPPPAAAAAGTAAAAAAPAGKADAVAAPEERRFAPHASSGTM
VMAD*

mRNA from alignment at Contig_1:1893298..1897128-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1171 ID=mRNA_1171|Name=jgi.p|Trimin1|1512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3831bp|location=Sequence derived from alignment at Contig_1:1893298..1897128- (Tribonema minus UTEX_B_3156 )
GCTGTCCCTACAGCACACTGAACTCATCAGTGAGAATTCATTGACAATAT
CCGTTGCCATGGCGCGCCAGGTCGTGGTGGGCAGCTGGCAGGACAAGTCC
CTCCTTCAGGGCGAGCAGTTTGACTCTGTGATTGCGGACTACCTCATCGG
CGCCCTCAACATACACAGCCCGTACTTCCAGGTGCGCGCATGCCGTGAAT
GTCGTACTCGTAAGCACTATCATAGCTGTCATATACGTATAATATGAAGT
TACAGTTTGCAGGCAGTAGTCGTTAGTGGCGTCAGTAACCCTTAACAACG
TCAACATTGTGATGCAAGTACCACGTTGAGTGATGCGGCGAGCGCAGCCG
CGTGCTGCTCCCGCCCACTGCGTGCGACGGCCGACAATCCGTTGAACACC
CTGTTGTTTTTTTTATGTTGTTGCTACGTAGTTGCCAACAAGACATCACC
CCACGAAACTCTCCACTGCGTGCGCTGCAGCTGCGCGCCGCTGCCGCAGC
ACAACATCTAATGGGGTACGTGTGACGCTCTCGCTGAGCGCCTGGCTTTC
CCACGTACGCACACCATCGACTTGAACTTCAAGTCCTCAACTTCAACACT
CATTGACCACGCCCACTCTGCATTCCGCGCCTGCACGCAGGACCAAATAT
TCCAGAGGCTGCGGCGACACATTGCGCCGGGCGGGCGGCTATACGTTGTG
GGCATGCAGCCGCTGCCCGATACGGCGCCAGGGGCGGCGGACATTGTCAT
CGAGGTTAGTCAGGGCTCTCGCCAGTGCCGGCTACTGCAATGCACTTCAA
ATACTTGAAGTATGAATTTTTGCAACCGCTGCCTGATACGGCGCCAGGGG
CCGCGGACATTGTCATTGAGGTCAGTCAGCGCTCGCTAGTGGCAACTATT
GCATGTACTTCAAGTTTGAACTTATGATTTGTCAGTGAGGTCAGTCAGCG
CCCGCCGACGCCTGCTGCCTTGTACTCGCGAACACCGGTTCTGGTTCGTG
TTTGCATGTTTGCTAGGGACACCAGCAGGGCTGACGCGGCGTGGTGTATG
CCGGCTTGCGTAGCAGCGGTTCCATGGTCGTATTGCTGGCAGAGCGGAAG
GGGTCAAAAGCAGACCGCGGCCACCCCGCGTGGGGGAGCCCAAGCACCAT
CACGACGGCAGGGCTCGCCCGCTTTCAGCTGCTGCGGCATCCCCTGCAGC
TGCAGCGCTGCAACATGCAGCAATGCCGCCTGGCTGCACTGCGTGCCGTG
CGTGCTCGCCATCTGCAGCGTTTGGCTTCCTTCCCCCATCGCCGTATGGT
CAAACCGCCCGTGTGCGCTCGTATCCACATGACCGCCGCTGCGTAACCGC
CATGTAACCGCCACTGTGGCCGACAGGTCGGCCGCCTGCGCGACGCGTGC
CTGATGCTGGCAGGCCACCGGCCGTACCGGGAGTACCCCATGGACTGGGT
GGAGCGTCACCTGCGTGCCGCGGGCCTCGCCGTCACTGCGGCGCGGCGCC
TGCCAATCCTGTATAGGTAACTACTGCTAAGCGGCGGCGGCGGCTTCAGC
ACTAAAGCTTTGTTCTCGGGTTCTCGTTGATGATGTGCCCTGATCGGCCT
GCTACAGTGCCCAACACGAGCACACACTGCATTTTACAAGAGGCACACTT
CAAGTTGAAGTATTGGAGACTGGGTGGAGCGTCGCCTGCGCGCGGCGGGC
CTCGCCGTCGCGGCGGCGCGGCGCCTGCCAATTCTGTACAGGTGGCCATG
GCGCCGCAGTGGCAGCTTCCACACCAAAGCTCTTTTCTCGGGCCGTTGTC
GTTGGTGTGCGTCGGTCGGTTCGCTGCAGTGCTTTCTGTGCTTGGCACGC
GTAGTACACCCCTGCATCTGCGTTCTACGAGAGGCATACTACAAGTTGAA
GTATTGGAGACTGGGTGGAGCGTCGCCTGCGCACGGTGGGCCTTGCCGTC
GCGGCGGCGGGGCGCCTGCCCACCTTGTACAGGTGACCACTGCTCAGCGG
CGGCGGTGTGAAGGCTCCCCTCTCATTGTCGATGTGTTGCCAATGAATTG
CTGCGCTTACTACTGTGGCAACGTGTAACCCTGACCCTAACCCTCGCCGC
GTTTGCCGCGCCGCGCAGCGAGGGCAGCATTCAGCGCCAGCTGGACATGG
CGGCACGGCGACTCTCCTTCATCTCCGACAGGTGAGATGCTGTTTTCTAC
TTCCGTAAACGAGGGCACACGCTGCTGCTGTTGTGATGCGCTTGGTACCT
TCTTGGCGCTTCAGGTACACAGAGGAATCGTCCGAGGGTGTGACGCTCCC
GCTGCCGCAGCGTGCAGCGTCGGCGCGACACTGCCACTGCTGCGCCCCTT
GCAGGCTGAGGGGGCTGACTGTGGCAGCGGGCAGCGCATCGCAGCGACCG
CTGCCATTGGCGCACCACACCAACGCATCATGGTTTACAAACATGCAGAG
ACGAGAGTTGCTGTGCATGACGTGACCGCAGACCCGTTGTTGCTGGCAAG
TGCGTCTCCGTCTGTGGCATGAGGGCCAGGGCTAGGGTCAGCTTGGGGTC
AGGTTTGAGTTGAGGATCGGTTTGAATAAGGGCGAGGGCTGTTAGCTTTG
ATAAGCGTTAGGGTTAGCTTCAGGTCAGGTTTGTATGAGTCAGTGACGCT
CCCACTGCATTCACGGCGTTTGTGCCGCCGAGCGGTTCTCAGCAGGCAGT
GACGGCCGTGATTGCGGCAGCTGTGCGTGCTTGCGTGTGAATGCCGCTAA
ATTATTGGCACCTGACGACTGAACCTTGTCAGTAAATCCCAAGCCTGCCC
CTGTCCAGCTCGTGGCCTGGAGTGAGACTTGATTAGCGGAGTGAGGGGGG
CAGCGATTTGAGCTCTACGCCACACGACCAGCTGATTCTGACCACAGGTG
TACCTTCACCCGCTGCGATGTTTTGCTGCAGGGATGTGGCATCTGCGCTG
GAAAGGCACATCGGCGACATACAGCGAAGGTACGCACGGCCTCGCGTGCT
CACTTTGAAGTGTCACTTGCAGTAAAAGCGGCGGGGTATGTGGTCAACAA
ACGGTGTGACCTGACCTGCACTCATGTTGACAAAGCAGAGGCGGCAGGCC
ATTGGTTGTGCACAGTTACAAGCGGCACACAGGGCCCTTGCACTCTTTTC
CCCCGCTCGCCGCTCGCTCGCTTTCAACGGTTGTTCATATGCTGAGGCGT
ACTCGGAAAGTCATTGCAATTTCAAGTACTCGCTCCCCCCCGTCAGTCCG
TGGACTGCGCTCTGAATTCGCACTGCGTCTGGCAGCTGCGGCTTTCAAAC
GTGCGTTGGGGGGGCGCAGCGCGCACAGCGGCCCACTCTGCAGCTCGTGA
GAAGCCCGCAGCCTGCAAGCCTAAATAACGCTATACTCACGTACAACTAC
CCCCCCCTCTCTCATTTGCACAGGATGAAGGGCATCTGCGCCGCTGTGCG
AGGAGGCCACATCCAGTTGGGCTTTGACTACATCATCGTCGCGGAGGCAG
CGCCCCCCTCGCGCCCCCCCTCGCGCCCCCCTTCGCGTCCCGGCCTCTCC
CTGCCGGTGCCGCCGCCGCCCGCTGCCGCTGCCGCCGGCACTGCCGCAGC
AGCAGCAGCGCCCGCAGGCAAAGCCGATGCCGTCGCTGCGCCGGAAGAAC
GGAGGTTCGCGCCGCACGCCAGCTCCGGCACAATGGTGATGGCCGACTGA
GCCAGTGCCGTTCGCGCAAGCTCAAGCCTGAAGTGTGGCTGCCGCGCGCC
GTCGGCGCCAGCAGCATTGCGTCTCATCGCGCGTCACTCACCGCACGCAG
CCTGTGCTGGTGTTGCCCCTTGCCCCCCCCC

Coding sequence (CDS) from alignment at Contig_1:1893298..1897128-

>mRNA_1171 ID=mRNA_1171|Name=jgi.p|Trimin1|1512|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=765bp|location=Sequence derived from alignment at Contig_1:1893298..1897128- (Tribonema minus UTEX_B_3156 )
ATGGCGCGCCAGGTCGTGGTGGGCAGCTGGCAGGACAAGTCCCTCCTTCA
GGGCGAGCAGTTTGACTCTGTGATTGCGGACTACCTCATCGGCGCCCTCA
ACATACACAGCCCGTACTTCCAGGACCAAATATTCCAGAGGCTGCGGCGA
CACATTGCGCCGGGCGGGCGGCTATACGTTGTGGGCATGCAGCCGCTGCC
CGATACGGCGCCAGGGGCGGCGGACATTGTCATCGAGGTCGGCCGCCTGC
GCGACGCGTGCCTGATGCTGGCAGGCCACCGGCCGTACCGGGAGTACCCC
ATGGACTGGGTGGAGCGTCACCTGCGTGCCGCGGGCCTCGCCGTCACTGC
GGCGCGGCGCCTGCCAATCCTGTATAGCGAGGGCAGCATTCAGCGCCAGC
TGGACATGGCGGCACGGCGACTCTCCTTCATCTCCGACAGGGATGTGGCA
TCTGCGCTGGAAAGGCACATCGGCGACATACAGCGAAGGATGAAGGGCAT
CTGCGCCGCTGTGCGAGGAGGCCACATCCAGTTGGGCTTTGACTACATCA
TCGTCGCGGAGGCAGCGCCCCCCTCGCGCCCCCCCTCGCGCCCCCCTTCG
CGTCCCGGCCTCTCCCTGCCGGTGCCGCCGCCGCCCGCTGCCGCTGCCGC
CGGCACTGCCGCAGCAGCAGCAGCGCCCGCAGGCAAAGCCGATGCCGTCG
CTGCGCCGGAAGAACGGAGGTTCGCGCCGCACGCCAGCTCCGGCACAATG
GTGATGGCCGACTGA