mRNA_11700 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149435
Unique NamemRNA_11700
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A836CM69_9STRA (Paired amphipathic helix (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM69_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.600e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL
Sbjct:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 67
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.300e-27
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            PAEFD+AISYVTTIKKR++TEPQ Y+ FLEIL TYQ+++R I+DVLEQVSSLFADHPDLLREFTYFL
Sbjct:  294 PAEFDHAISYVTTIKKRFSTEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFL 360
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A7S3Y2Z2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2Z2_HETAK)

HSP 1 Score: 104 bits (260), Expect = 7.840e-27
Identity = 49/67 (73.13%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EFD+AISYVTTIK+R+ +EP +Y+ FLEIL TYQ+++R I+DVLEQVS+LFADHPDLL+EFTYFL
Sbjct:   77 PVEFDHAISYVTTIKRRFQSEPAIYKAFLEILHTYQKEQRGIKDVLEQVSALFADHPDLLKEFTYFL 143
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A7S4K7F6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7F6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.570e-25
Identity = 46/67 (68.66%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EFD+AI+YVTTIKKR+A EP+ Y+ FLEIL TYQ+++R I++VL++VS LFADHPDLL++FTYFL
Sbjct:   16 PVEFDHAINYVTTIKKRFAAEPETYKKFLEILHTYQKEQRGIKEVLDEVSLLFADHPDLLKDFTYFL 82
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A7S1XK99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK99_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.130e-25
Identity = 45/67 (67.16%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EFD+AI+YVTTIKKR++ +P  Y+ FLEIL TYQ+++R+I++VL+QVS LFA+HPDLL+EFTYFL
Sbjct:   23 PVEFDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQKEQRSIKEVLDQVSELFAEHPDLLKEFTYFL 89
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A7R9ZHJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHJ2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.470e-25
Identity = 48/65 (73.85%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    7 EFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            EFD+AI+YVTTIKKR+A +P+ YQ FLEIL TYQ+++R I++VLEQVSSLFADHPDLL+EFT+FL
Sbjct:  121 EFDHAITYVTTIKKRFANDPRTYQTFLEILHTYQKEQRGIKEVLEQVSSLFADHPDLLKEFTFFL 185
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A1Z5JWV2_FISSO (Paired amphipathic helix protein Sin3a n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWV2_FISSO)

HSP 1 Score: 105 bits (261), Expect = 8.920e-25
Identity = 48/67 (71.64%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EFD+AI+YVTTIKKR+ATEP++Y+ FLEIL TYQ+++R I++VL++VS LFADHPDLL+EFTYFL
Sbjct:  261 PMEFDHAINYVTTIKKRFATEPEIYKKFLEILHTYQKEQRGIKEVLDEVSKLFADHPDLLKEFTYFL 327
[Close]
BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: B8BXR5_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXR5_THAPS)

HSP 1 Score: 97.8 bits (242), Expect = 2.050e-24
Identity = 45/67 (67.16%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EFD+AI+YVTTIKKR+A  P++Y+ FLEIL TYQ+++R I++VL++VS LFADH DLL+EFTYFL
Sbjct:   89 PVEFDHAINYVTTIKKRFAAHPEIYRKFLEILHTYQKEQRGIKEVLDEVSVLFADHADLLKEFTYFL 155
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BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A8J9S0A7_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S0A7_PHATR)

HSP 1 Score: 95.1 bits (235), Expect = 2.290e-24
Identity = 43/67 (64.18%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EF++AI+YVT IKKR+A EP+ Y+ FLEIL TYQ+++R I++VL++VS LFA+HPDLL+EFT+FL
Sbjct:    4 PMEFNHAINYVTNIKKRFANEPETYKKFLEILHTYQKEQRGIKEVLDEVSELFAEHPDLLKEFTFFL 70
[Close]
BLAST of jgi.p|Trimin1|149435 vs. uniprot
Match: A0A7S2XTR4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTR4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.220e-24
Identity = 46/67 (68.66%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVSSLFADHPDLLREFTYFL 201
            P EFD+AI+YVTTIKKR+A+EP++Y+ FL+IL TYQ++++ I++VL++VSSLFADHPDLL+EFTYFL
Sbjct:   53 PVEFDHAINYVTTIKKRFASEPEIYKKFLQILHTYQKEQKGIKEVLDEVSSLFADHPDLLKEFTYFL 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149435 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM69_9STRA1.600e-39100.00Paired amphipathic helix (Fragment) n=1 Tax=Tribon... [more]
A0A835ZD67_9STRA1.300e-2782.09HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A7S3Y2Z2_HETAK7.840e-2773.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4K7F6_9STRA2.570e-2568.66Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S1XK99_9STRA6.130e-2567.16Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9ZHJ2_9STRA8.470e-2573.85Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1Z5JWV2_FISSO8.920e-2571.64Paired amphipathic helix protein Sin3a n=2 Tax=Fis... [more]
B8BXR5_THAPS2.050e-2467.16Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A8J9S0A7_PHATR2.290e-2464.18Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S2XTR4_9STRA4.220e-2468.66Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_115contigContig_115:456153..456924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149435|gw1.115.63.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
KEGG koko:K11644
DescriptionHistone deacetylase (HDAC) interacting
COG categoryB
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota,2XBQM@2836|Bacillariophyta
Evalue2.13e-23
Seed ortholog159749.K0TF38
Hectar predicted targeting categoryother localisation
TranscriptId149757
TrackFilteredModels1
ProteinId149435
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149435gene_11700Tribonema minus UTEX_B_3156 geneContig_115 456153..456924 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11700_1exon_11700_1Tribonema minus UTEX_B_3156 exonContig_115 456153..456296 +
exon_11700_2exon_11700_2Tribonema minus UTEX_B_3156 exonContig_115 456868..456924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11700CDS_11700Tribonema minus UTEX_B_3156 CDSContig_115 456153..456296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149435Trimin1|149435|gw1.115.63.1Tribonema minus UTEX_B_3156 polypeptideContig_115 456153..456924 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11700 ID=mRNA_11700|Name=jgi.p|Trimin1|149435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_115:456153..456924+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCGCCGAGTTCGACTACGCCATCAGCTACGTGACGACCATCAAGAAGCG
CTATGCGACGGAGCCGCAGGTGTACCAGGACTTCCTGGAGATCCTGCGCA
CATACCAGCAGAAGGAGCGCGCCATCGAGGACGTGCTGGAGCAGGTCTCC
TCCCTCTTTGCGGACCACCCCGACCTCCTGCGCGAGTTCACCTACTTCCT
G
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protein sequence of jgi.p|Trimin1|149435

>Trimin1|149435|gw1.115.63.1 ID=Trimin1|149435|gw1.115.63.1|Name=jgi.p|Trimin1|149435|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
PAEFDYAISYVTTIKKRYATEPQVYQDFLEILRTYQQKERAIEDVLEQVS
SLFADHPDLLREFTYFL
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mRNA from alignment at Contig_115:456153..456924+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11700 ID=mRNA_11700|Name=jgi.p|Trimin1|149435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=772bp|location=Sequence derived from alignment at Contig_115:456153..456924+ (Tribonema minus UTEX_B_3156 )
CCCGCCGAGTTCGACTACGCCATCAGCTACGTGACGACCATCAAGAAGCG
CTATGCGACGGAGCCGCAGGTGTACCAGGACTTCCTGGAGATCCTGCGCA
CATACCAGCAGAAGGAGCGCGCCATCGAGGACGTGCTGGAGCAGGTGCGT
CACTCGTCGCTTGCTGCAGTTGAAGTTGAAGTTATGCGCGCCGCGCGTCG
GCTTGCGTCAGTTGAACTTGCAGCTGAAGGGTCTGAACGCGGCGTGCGAC
CGCCGCAATCATGCAGGAGCGCGCGTGGCGGTGCGGCGTGCACCATTCTG
AGAGCATATCAATCGCTCCGCGGTGCTTATGCAAGCCCCTGCTTGTGCTC
GCTCGAGCAATCCGGCATCGCGCTGAGCCATTCTCTCGCGCACCATAAAG
GGCGGGCGCATTCCAGGCGCCGATCTCCTGACACGCTTCGAGTGTCTACA
GCACGCGTCGTGTGATGCTCTGGAACGCACCACGCCATCCTCCTTCTCTC
GCAAGTACTCATATGACCACGCATGACGTAAGTGTGGCACTCTGAAATGC
ACTGCACCAACCTCCCCCTCCTCCTGCAAGTACTCACACTTCACAGAAGT
ACATAGAAGTACGACAATGCGCCCCCCATGGCTTACCACCCCCCCCCCCC
CCCTTACCTCCCCCCCTTGCCCCCCGCCCCTTCCTCCCCCTCCTACCCGC
CCCCCCCCCCCCCAGGTCTCCTCCCTCTTTGCGGACCACCCCGACCTCCT
GCGCGAGTTCACCTACTTCCTG
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Coding sequence (CDS) from alignment at Contig_115:456153..456924+

>mRNA_11700 ID=mRNA_11700|Name=jgi.p|Trimin1|149435|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_115:456153..456924+ (Tribonema minus UTEX_B_3156 )
CCCGCCGAGTTCGACTACGCCATCAGCTACGTGACGACCATCAAGAAGCG
CTATGCGACGGAGCCGCAGGTGTACCAGGACTTCCTGGAGATCCTGCGCA
CATACCAGCAGAAGGAGCGCGCCATCGAGGACGTGCTGGAGCAGGTCTCC
TCCCTCTTTGCGGACCACCCCGACCTCCTGCGCGAGTTCACCTACTTCCT
G
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