mRNA_11699 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155267
Unique NamemRNA_11699
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A836CQ34_9STRA (Paired amphipathic helix (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ34_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.930e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD
Sbjct:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 71
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BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A7S2CGJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGJ9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.010e-36
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            +RELKVEDALLYLDQVKMEFGDKPEIY EFLDIMKNFKAQAID  GVI R S LFRGYNKLILGFNTFLPD
Sbjct:   17 MRELKVEDALLYLDQVKMEFGDKPEIYNEFLDIMKNFKAQAIDTPGVIQRVSQLFRGYNKLILGFNTFLPD 87
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BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A7S3XUT3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUT3_HETAK)

HSP 1 Score: 127 bits (320), Expect = 1.190e-36
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            +RELKVEDALLYLDQVKMEF DKPEIY EFLDIMKNFKAQAID  GVI + S LFRGYNKLILGFNTFLPD
Sbjct:    9 MRELKVEDALLYLDQVKMEFSDKPEIYNEFLDIMKNFKAQAIDTPGVITKVSRLFRGYNKLILGFNTFLPD 79
[Close]
BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.230e-35
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            LRELKVEDALLYLDQVKMEFGDKPEIY EFLDIMKNFKAQAID  GVI+R STLFRGYNKLILGFNTFLPD
Sbjct:   27 LRELKVEDALLYLDQVKMEFGDKPEIYNEFLDIMKNFKAQAIDTPGVIDRVSTLFRGYNKLILGFNTFLPD 97
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BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A6H5KLK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.630e-33
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            +REL+VEDALLYLDQVK+EFGDKPEIY EFLDIMKNFKA AID  GVI R S+LFRGYNKLILGFNTFLPD
Sbjct:    1 MRELRVEDALLYLDQVKIEFGDKPEIYNEFLDIMKNFKAMAIDTPGVIRRVSSLFRGYNKLILGFNTFLPD 71
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BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A7S3MHZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHZ0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.410e-33
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 RELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            RELKVEDALLYLDQVKMEF DKP+IY EFLDIMKNFKAQ+I+  GVI R   LFRGYNKLILGFNTFLP+
Sbjct:   61 RELKVEDALLYLDQVKMEFSDKPQIYNEFLDIMKNFKAQSINTPGVIERVKNLFRGYNKLILGFNTFLPE 130
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BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: D7G0X2_ECTSI (HDAC_interact domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.550e-32
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            +REL+VEDALLYLDQVK+EFGDKPEIY EFLDIMKNFKA AID  GVI R S+LFRGYNKLILGFNTFLPD
Sbjct:    1 MRELRVEDALLYLDQVKIEFGDKPEIYNEFLDIMKNFKAMAIDTPGVIRRVSSLFRGYNKLILGFNTFLPD 71
[Close]
BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A7R9YDU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.850e-32
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            +RELKVEDAL+YLDQVKMEF  KPEIY EFL+IMKNFKAQ ID  GVI R S LFRGYN LILGFNTFLP+
Sbjct:    4 MRELKVEDALIYLDQVKMEFSSKPEIYNEFLEIMKNFKAQEIDTPGVIRRVSNLFRGYNSLILGFNTFLPE 74
[Close]
BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A7S0TCR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TCR5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.920e-31
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 RELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            RELKVEDALLYLDQVK EFGD+PEIY EFL+IMK+FK+Q ID  GVI R STLF+GY KLI GFNTFLP+
Sbjct:   50 RELKVEDALLYLDQVKAEFGDRPEIYNEFLEIMKSFKSQEIDTPGVIERVSTLFKGYGKLIYGFNTFLPE 119
[Close]
BLAST of jgi.p|Trimin1|155267 vs. uniprot
Match: A0A7S4MLJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MLJ2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.140e-31
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 213
            +RELKVEDALLYLDQVKMEFGD+P IY EFL+IMKNFKAQ ID  GVI R STLFRGYN LILGFNTFLP+
Sbjct:  335 MRELKVEDALLYLDQVKMEFGDRPRIYNEFLEIMKNFKAQEIDTPGVIRRVSTLFRGYNNLILGFNTFLPE 405
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155267 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CQ34_9STRA3.930e-44100.00Paired amphipathic helix (Fragment) n=1 Tax=Tribon... [more]
A0A7S2CGJ9_9STRA1.010e-3690.14Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XUT3_HETAK1.190e-3687.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZD67_9STRA4.230e-3592.96HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A6H5KLK8_9PHAE1.630e-3385.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3MHZ0_9STRA5.410e-3382.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D7G0X2_ECTSI1.550e-3285.92HDAC_interact domain-containing protein n=1 Tax=Ec... [more]
A0A7R9YDU9_9STRA2.850e-3280.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0TCR5_9STRA1.920e-3178.57Hypothetical protein (Fragment) n=1 Tax=Chrysocyst... [more]
A0A7S4MLJ2_9STRA2.140e-3183.10Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_115contigContig_115:450667..451871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155267|gw1.115.100.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
KEGG koko:K11644
Descriptionhistone deacetylation
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota
Evalue2.54e-33
Seed ortholog2880.D7G0X2
Hectar predicted targeting categoryother localisation
TranscriptId155589
TrackFilteredModels1
ProteinId155267
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155267gene_11699Tribonema minus UTEX_B_3156 geneContig_115 450667..451871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11699_1exon_11699_1Tribonema minus UTEX_B_3156 exonContig_115 450667..450711 +
exon_11699_2exon_11699_2Tribonema minus UTEX_B_3156 exonContig_115 450830..450889 +
exon_11699_3exon_11699_3Tribonema minus UTEX_B_3156 exonContig_115 451764..451871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11699CDS_11699Tribonema minus UTEX_B_3156 CDSContig_115 450667..450711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155267Trimin1|155267|gw1.115.100.1Tribonema minus UTEX_B_3156 polypeptideContig_115 450667..451871 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11699 ID=mRNA_11699|Name=jgi.p|Trimin1|155267|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_115:450667..451871+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCGGGAGCTTAAGGTGGAGGATGCTCTCCTGTATCTGGACCAGGTGAA
AATGGAGTTTGGCGACAAGCCGGAGATCTACAAGGAGTTTTTGGACATAA
TGAAGAACTTCAAGGCGCAGGCGATCGACATGCTGGGCGTCATCAACCGC
GCCTCCACGCTCTTCCGCGGCTACAACAAGCTCATCCTCGGCTTCAACAC
GTTCCTCCCCGAC
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protein sequence of jgi.p|Trimin1|155267

>Trimin1|155267|gw1.115.100.1 ID=Trimin1|155267|gw1.115.100.1|Name=jgi.p|Trimin1|155267|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
LRELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINR
ASTLFRGYNKLILGFNTFLPD
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mRNA from alignment at Contig_115:450667..451871+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11699 ID=mRNA_11699|Name=jgi.p|Trimin1|155267|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1205bp|location=Sequence derived from alignment at Contig_115:450667..451871+ (Tribonema minus UTEX_B_3156 )
CTGCGGGAGCTTAAGGTGGAGGATGCTCTCCTGTATCTGGACCAGGTAAC
GGCCTGACCTCACGCTTGACGCATTTGTTGCTGCAGCTCGTTGCCTCTTG
TTGCCTGGTGGTGATTGCAGCGTCACTCACCGTGCCCATGCCGCTCTTGT
GTCTCTCGCGCAGGTGAAAATGGAGTTTGGCGACAAGCCGGAGATCTACA
AGGAGTTTTTGGACATAATGAAGGTGAGCTGAGAAAAGGTGGTGAAAGTG
CATACCCCCCGTGCTATGCGGTGCACAGCCATGGTGCAAAGTTTTTTTCC
GCTGCCGCTTCAATCCATGCGGGCAGCCAGGCGCTCAGACGTCAACATGC
ACAAGAGTTGCGCGCAGCGTGCAAGTACTCGTGCGCGCCCGCCATTCCAC
ACGGCGAGCTGCCAGCGCCATTGTGAGAGATCCCGCATCTGCCAGTGAAC
TCGTGCTCTGACGGCGACAGCAGCGGCGCAGCAGTTGCTCTGCAATGAGG
CTGCAATGCCAGGCACAGGTGTTCGAGGCGACGAAGCATTGAATGGTGCC
GTTGAATGCAGGCGGGCTCAGTGACGCTGTGAGGGAGGGTTCACAACACA
GTGCTCAGCAGCAGGCAGCACGTCTCACTTCCGCGCGCTTGCTGCAGTTT
GACCGGAGGGTGCGCAGCCAGCAGGAATCTGTTGCGCCACACTTGGGTAG
GTACTGCGCGGATGTTTATACATACCATGCCTCCAACACCACCTTCAATA
CGTGGCGTCAATGCCCCCGTCATTGACCAACCAGTAGTCGCCGACATACT
GACGACAACACAGCAGCATCACGGCACTCAAGCATACACAACGTACTTGT
GAGCGATTGATGCTGGTGGTGGAAGCGGCCGTGACGTGGTGATGACTGCC
ACTCCACGCACACTCATACACACTTGCAAACACCTCACCTTCATCGGCCC
TGTTTCAGGCCCTGAAGGCACCAACTTGCTGTGGCCCTGTCGCCAGACTG
AGGTTCACGACCCGTACGCAGCACGCTGCCGCTGACTTCCTCATCCCCCC
TCCCCCCCCCGGTGACTCCCCCCCCCCCTCGCCCCTCGTCATCGCAGAAC
TTCAAGGCGCAGGCGATCGACATGCTGGGCGTCATCAACCGCGCCTCCAC
GCTCTTCCGCGGCTACAACAAGCTCATCCTCGGCTTCAACACGTTCCTCC
CCGAC
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Coding sequence (CDS) from alignment at Contig_115:450667..451871+

>mRNA_11699 ID=mRNA_11699|Name=jgi.p|Trimin1|155267|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_115:450667..451871+ (Tribonema minus UTEX_B_3156 )
CTGCGGGAGCTTAAGGTGGAGGATGCTCTCCTGTATCTGGACCAGGTGAA
AATGGAGTTTGGCGACAAGCCGGAGATCTACAAGGAGTTTTTGGACATAA
TGAAGAACTTCAAGGCGCAGGCGATCGACATGCTGGGCGTCATCAACCGC
GCCTCCACGCTCTTCCGCGGCTACAACAAGCTCATCCTCGGCTTCAACAC
GTTCCTCCCCGAC
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