mRNA_11662 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A836CN91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN91_9STRA) HSP 1 Score: 256 bits (653), Expect = 5.370e-84 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 Query: 1 MASAYVLCMLTGLLYYYQWTPADLLVYSSLRVADMVFIHATTACDVYVALRLADRLNAVCFCSIVAVIVYIYYSGLSRCEVWHASTHILGNVAHVLMYSDLSGHASKAASVYRQFRGRAWRTERRLL 381 MASAYVLCMLTGLLYYYQWTPADLLVYSSLRVADMVFIHATTACDVYVALRLADRLNAVCFCSIVAVIVYIYYSGLSRCEVWHASTHILGNVAHVLMYSDLSGHASKAASVYRQFRGRAWRTERRLL Sbjct: 1 MASAYVLCMLTGLLYYYQWTPADLLVYSSLRVADMVFIHATTACDVYVALRLADRLNAVCFCSIVAVIVYIYYSGLSRCEVWHASTHILGNVAHVLMYSDLSGHASKAASVYRQFRGRAWRTERRLL 127
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A836CP01_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP01_9STRA) HSP 1 Score: 550 bits (1417), Expect = 1.600e-191 Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 1 Query: 1 MIKGIQDRLNFVGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFISNAKLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGVAANGDSRKLR 1146 MIKGIQDRLNFVGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFISNAKLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGVAANGDSRKLR Sbjct: 1 MIKGIQDRLNFVGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFISNAKLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGVAANGDSRKLR 382
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A6H5KFN7_9PHAE (Protein-S-isoprenylcysteine O-methyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN7_9PHAE) HSP 1 Score: 228 bits (581), Expect = 4.690e-67 Identity = 142/338 (42.01%), Postives = 168/338 (49.70%), Query Frame = 1 Query: 1 MIKGIQDRLNFVGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFISNAKLR 1014 M+ IQ LNF G NPQF+ GLG+VG+AGF G FGV + C L + GL S LQ LY +L+ FHF EFF TA++KPD +SY+SFVLNHS+ YT ALLASW E+ +EA L P LK +VA G AL + R VG MWT G NFNH I M R+ H+LVTRGVY LRHPSY GWFWWS+GTQ++L NPLC Y A +FF RIPYEE LL FYP +YPAY T+VGIPF+ N R Sbjct: 1 MLNSIQRLLNFDGCTNPQFSSSDGLGQVGVAGFLTGLVFGVHLSIAGCCLTINGLVLSRLLQWSLYSCSLSFFHFSEFFVTAVFKPDIVSYNSFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFR--------------------------VGA------------------------MWTAGSNFNHEI-----------------------------------MQRREQSHQLVTRGVYRFLRHPSYFGWFWWSLGTQLVLCNPLCFLVYVVAASSFFRRRIPYEEALLESFYPEQYPAYVRRTFVGIPFVPNRSNR 253
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A7S2SR19_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR19_9STRA) HSP 1 Score: 176 bits (446), Expect = 2.890e-47 Identity = 118/340 (34.71%), Postives = 153/340 (45.00%), Query Frame = 1 Query: 1 MIKGIQDRLNFVGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPL-QVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLK-------ASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFI 996 ++ IQ LNF G E+PQF G+G++G+AGF LG GV C++ N +++ S PL Q GLY + +FHF EFF+TA++KP +SYDSFV+NHS AYTMA++AS E+ VE + K LG++A+GQ R + MWT +FNHLI H L+T GVY + RHPSY GWFWW VGTQVLL NP+ Y A W FF R+PYEE L + + EY YA T V IPF+ Sbjct: 6 LVNRIQSVLNFDGWESPQFKSSAGVGRIGVAGFGLGIIVGVHVCLLAVNPWIW---RSWPLAQWGLYVTCIAVFHFTEFFTTAMFKPTVVSYDSFVINHSTAYTMAVIASAAEFWVEFLVFGHRKFQPVVFVLGLGLIAIGQFFRSA---------------------------------------------------------AMWTARESFNHLIVEHLAPE-----------------------------------HRLITHGVYRIFRHPSYFGWFWWCVGTQVLLCNPIVALLYAGAAWNFFQTRVPYEEATLLRLFGEEYKLYAQRTPVAIPFV 250
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A7S2Y1W5_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1W5_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.380e-45 Identity = 114/319 (35.74%), Postives = 153/319 (47.96%), Query Frame = 1 Query: 43 ENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPLQVG-LYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFI 996 +N + R G G+ G+AGF +G G C++ CNL +Y S P+ + LY +L FHF EFF T+++ P +LSYD+F++NHS+ YT+A +ASW+E+ VE P LK L LG T + + + VG A MWT G NFNH+I +++ H+LVT G+Y LRHPSY GWFWWS+G QVLL NP+C Y A W FFS RIP+EE L +F+P +YPAY T +GIPFI Sbjct: 11 DNIAYNTRNGPGRFGVAGFLIGLLLGFHLCLLVCNL-IY--DPSFPVVIWCLYFTSLAGFHFGEFFVTSIFNPWSLSYDAFIINHSKEYTVAAIASWIEFWVERFTFPGLK--LAGFQLGAGXXXXXXXXEAT------WWMYGACILSGLGLVLVLVGQACRSGA------------------MWTAGSNFNHVI-----------------------------------ATKKEKEHQLVTHGLYRYLRHPSYFGWFWWSIGLQVLLLNPVCTLAYAAASWRFFSRRIPFEEGQLEKFFP-DYPAYKRRTIIGIPFI 264
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: W7UAK7_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAK7_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.730e-45 Identity = 122/337 (36.20%), Postives = 153/337 (45.40%), Query Frame = 1 Query: 4 IKGIQDRLNF---VGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPL-QVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVAL-GQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFIS 999 I +Q L+F NP F G+G++GLAGF LG +G A +V L G + L L + Y +L FHFMEF STALYKP++++YDS+++NHS+ YT+A LA+W E+ +E P LK S L G + A R +VA M T +F+H I M R H+LVT G+Y LRHPSYCGWFWW VGTQ+LL NPLC Y W FF+ RI YEE L FYP EYP+Y T VGIPFIS Sbjct: 4 IDRLQKCLDFNFPAAAANPAFHTNRGVGRIGLAGFLLGGLWG--AHLVLFFAALLGNDNKLWLVRWSAYMVSLFCFHFMEFLSTALYKPESVTYDSYMINHSKEYTVAALAAWAEFWLELWFFPDLKISGSFTCLLGLLFLVGGQACR--------------IVA------------------------------------MHTARGHFSHTI-----------------------------------METRQKDHQLVTHGIYRFLRHPSYCGWFWWVVGTQILLCNPLCALIYALVSWRFFAARIKYEEGTLKTFYPQEYPSYCRQTVVGIPFIS 253
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A1V9YAN0_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YAN0_9STRA) HSP 1 Score: 166 bits (419), Expect = 4.740e-44 Identity = 112/326 (34.36%), Postives = 146/326 (44.79%), Query Frame = 1 Query: 52 QFADRCGLGKVGLAGFCLGAAFGVAAC----VVCCNLYLYGLQSSLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLK-------ASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFI 996 QF GLGKV +A F +G V C VV + +++ LQ +Y LT FHF EF STA +KP +SY+SF+LNHS+AY MAL SW EY +EA P+ K A LG++ +GQ R+ MWT NF+H I +A+R H+L+T G+Y +RHPSY GWF+WS+G+QV L NPLC YT A W+FF +RIPYEE +L F+P EYP Y A T G+PF+ Sbjct: 5 QFTSDVGLGKVAVAAFGIGFVMAVHLCLLFWVVLATDASWTYHNAI-LQWSVYMVCLTFFHFSEFISTAAFKPGYVSYESFLLNHSDAYQMALFTSWAEYWLEAYFFPASKFSPFFMWAGLGLIVMGQFFRVG---------------------------------------------------------AMWTAKSNFSHRI----------------------------------EIAKRK-DHQLITHGLYTYIRHPSYFGWFYWSIGSQVFLCNPLCTLAYTAASWSFFKDRIPYEEEILLDFFPDEYPQYKARTISGVPFV 237
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: W4FUZ1_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FUZ1_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.320e-43 Identity = 117/322 (36.34%), Postives = 150/322 (46.58%), Query Frame = 1 Query: 52 QFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQS-------SLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFI 996 QF GLGKV +AGF LG V A VC ++ Y L + +Q LY LT FHF EF STA +KP +SY+SF+LNHS+AY MAL A +E+ +E+ P LK + ++G L + ++ R VG MWT NF+H I +A+R H LVT GVY +RHPSY GWF+WS+G+QV L NPLC Y A W+FF +RIPYEE LL +F+P EYPAY A T+ GIPF+ Sbjct: 5 QFTSDVGLGKVAIAGFGLGF---VMALHVCLFIWAYFLTDGDTWVYRNAVIQWSLYVVCLTFFHFSEFISTAAFKPGFVSYESFLLNHSDAYHMALAAGCVEFWLESHFFPELKYIHDVSSVGLFLIVLGASFR--------------------------VGA------------------------MWTAKSNFSHRI----------------------------------EVAKRK-DHTLVTHGVYKYIRHPSYFGWFYWSIGSQVFLCNPLCTLAYAAASWSFFKDRIPYEEELLLEFFPAEYPAYKARTFSGIPFV 238
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: D7G1X4_ECTSI (Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X4_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.660e-43 Identity = 110/279 (39.43%), Postives = 130/279 (46.59%), Query Frame = 1 Query: 1 MIKGIQDRLNFVGVENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQSSLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQ 837 M+ IQ LNF G NPQF+ GLG+VG+AGF G FGV + C L + GL S LQ LY +L+ FHF EFF TA++KPD +SY+SFVLNHS+ YT ALLASW E+ +EA L P LK +VA G AL + R VG MWT G NFNH I M R+ H+LVTRGVY LRHPSY GWFWWS+GTQ Sbjct: 1 MLNSIQRLLNFDGCTNPQFSSPDGLGQVGVAGFLTGLVFGVHLSIAGCCLAINGLVLSRLLQWSLYSCSLSFFHFSEFFVTAVFKPDIVSYNSFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFR--------------------------VGA------------------------MWTAGSNFNHEI-----------------------------------MQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 194
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A067CQM9_SAPPC (Protein-S-isoprenylcysteine O-methyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQM9_SAPPC) HSP 1 Score: 163 bits (412), Expect = 4.820e-43 Identity = 113/322 (35.09%), Postives = 145/322 (45.03%), Query Frame = 1 Query: 52 QFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQS-------SLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFI 996 QF GLGKV +A F +G V C+ L+ L + + LQ +Y LT FHF EF STA +KP +SY+SF+LNHS+AY +AL SW+EY VEA P K + LG L + R VG MWT NF+H I +A+R HEL+T G+Y +RHPSY GWF+WS+G+QV L NPLC YT A W+FF +RIPYEE +L F+P +YPAY A T G+PF+ Sbjct: 5 QFTSDVGLGKVAVAAFGIGFVMAVHLCL----LFYVVLATDAGWTYHNATLQWAVYMVCLTFFHFSEFISTAAFKPGFVSYESFLLNHSDAYQVALFTSWVEYWVEAYFFPDAKFRPLFMWLGLLLVVMGQFFR--------------------------VGA------------------------MWTAKSNFSHRI----------------------------------EIAKRK-DHELITHGLYTYIRHPSYFGWFYWSIGSQVFLCNPLCTIAYTAASWSFFKDRIPYEEEILLDFFPEQYPAYKARTISGVPFV 237
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Match: A0A6G0XJW4_9STRA (Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJW4_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.300e-42 Identity = 115/325 (35.38%), Postives = 149/325 (45.85%), Query Frame = 1 Query: 40 VENPQFADRCGLGKVGLAGFCLGAAFGVAACVVCCNLYLYGLQS------SLPLQVGLYGAALTLFHFMEFFSTALYKPDTLSYDSFVLNHSEAYTMALLASWLEYAVEAALAPSLKASLGMVALGQALRMSNSAVRCTGXXXXXXXXXXXVVATCTYMYFNYVGMASXXXXXXXXXXXXXXXXXXXXXXMWTCGRNFNHLIFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAERDAGHELVTRGVYAVLRHPSYCGWFWWSVGTQVLLGNPLCLAGYTWAGWAFFSERIPYEERLLSQFYPHEYPAYAAHTYVGIPFI 996 +++ QF GLGKV +AGF LG V A VC ++ Y L + +Q +Y LT FHF EF STA +KP +SY+SF+LNHSEAY +AL A +E+ +E+ P K + G L + ++ R VG MWT NF+H I +A+R H LVT GVY +RHPSY GWF+WS+G+QV L NPLC YT A W+FF +RIPYEE LL +F+P EYP Y A T GIPF+ Sbjct: 1 MDSIQFTSDVGLGKVAVAGFGLGF---VMAFHVCLYIWAYWLVDGGWEYRNAVIQWSIYIVCLTFFHFSEFISTAAFKPGFVSYESFLLNHSEAYHIALAAGCVEFWLESYFFPDGKYQHAVAGFGLFLILMGASFR--------------------------VGA------------------------MWTAKSNFSHRI----------------------------------EVAKRK-DHTLVTHGVYTYIRHPSYFGWFYWSIGSQVFLCNPLCALAYTAASWSFFRDRIPYEEELLLEFFPEEYPKYKARTISGIPFV 237 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|352317 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11662 ID=mRNA_11662|Name=jgi.p|Trimin1|352317|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=794bp|location=Sequence derived from alignment at Contig_115:209229..210275+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCTTCAGCATACGTGCTGTGCATGCTCACTGGACTACTTTACTACTAback to top protein sequence of jgi.p|Trimin1|352317 >Trimin1|352317|estExt_Genemark1.C_Ctg_1150031 ID=Trimin1|352317|estExt_Genemark1.C_Ctg_1150031|Name=jgi.p|Trimin1|352317|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp MASAYVLCMLTGLLYYYQWTPADLLVYSSLRVADMVFIHATTACDVYVALback to top mRNA from alignment at Contig_115:209229..210275+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11662 ID=mRNA_11662|Name=jgi.p|Trimin1|352317|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1047bp|location=Sequence derived from alignment at Contig_115:209229..210275+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_115:209229..210275+ >mRNA_11662 ID=mRNA_11662|Name=jgi.p|Trimin1|352317|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_115:209229..210275+ (Tribonema minus UTEX_B_3156 )back to top |