mRNA_11652 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|174518
Unique Name	mRNA_11652
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A835ZEA7_9STRA (BEACH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA7_9STRA)

HSP 1 Score: 510 bits (1314), Expect = 4.400e-183
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1

Query:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT
Sbjct:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 248

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A812Y341_SYMMI (Rg protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y341_SYMMI)

HSP 1 Score: 305 bits (782), Expect = 5.440e-99
Identity = 155/249 (62.25%), Postives = 187/249 (75.10%), Query Frame = 1

Query:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPA-IPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            + +T+LWRRR +SNFEY+M LNI AGRS+NDITQ    YPV PW+L D+TSD +DL+DP V+RDLTKP+GALNPERL   LDR+ +F D + +P FMYGSHYSS+GIV+H+L+RQEPFTSM I LQGG FDCPDRLFF++ +  R     SMSDVKEL+PE F LPE F+N N LPLG LQ+    VDDV LP    G+   FVR    A+ESD  S HLH W+DLVFG KQ    AA++ACNLF+YLT
Sbjct:  187 SNWTELWRRRMISNFEYVMRLNIMAGRSFNDITQ----YPVMPWILADYTSDEIDLNDPGVYRDLTKPVGALNPERLEEILDRYKSFGDASDMPSFMYGSHYSSSGIVMHFLIRQEPFTSMAITLQGGRFDCPDRLFFNMKETWR-CCNTSMSDVKELIPECFYLPEMFINTNQLPLGELQDDRGMVDDVILPRWCKGNPFEFVRIHSEAMESDYASEHLHIWIDLVFGQKQVG-QAAVDACNLFHYLT 429

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7S3UM61_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM61_HETAK)

HSP 1 Score: 297 bits (760), Expect = 8.180e-96
Identity = 156/252 (61.90%), Postives = 187/252 (74.21%), Query Frame = 1

Query:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTL-DLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQG-GHFDCPDRLFFDVAQVRRPVSQLS--MSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
             R T+ WRRR++SNFEYLMHLN++AGRSYND+TQ    YPVFPWVL D+  +   DLDDP  FRDL+KP+GAL+  RL  F +R+ +FEDP +PKFMYGSHYSSAG+VLHYL+R EP++ + +  QG G FDCPDRLFFDVA+  R  S  S  MSDVKEL+PEF+C+PE FLN+N LPLG LQ+G   V DV LP    G    FV  MRRALES+ VS  LH WVDLVFG KQ   +AA+ A N+FYYLT
Sbjct:   81 GRVTEEWRRRRLSNFEYLMHLNLSAGRSYNDLTQ----YPVFPWVLADYEGEEEPDLDDPKSFRDLSKPMGALDSGRLQLFRERYQHFEDPHVPKFMYGSHYSSAGVVLHYLLRTEPYSGLAVEFQGTGRFDCPDRLFFDVAKAWRGASGASRNMSDVKELIPEFYCMPEIFLNSNDLPLGELQDGMGSVGDVVLPRWARGPHH-FVSVMRRALESEHVSERLHHWVDLVFGYKQRG-EAAVAADNVFYYLT 326

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7R9YE59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE59_9STRA)

HSP 1 Score: 294 bits (752), Expect = 1.870e-95
Identity = 150/250 (60.00%), Postives = 186/250 (74.40%), Query Frame = 1

Query:    4 RYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFE---DPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            R+T LW+ R++SNFEY+M LN+ AGRSYND+TQ    YPVFPWV+ D+TSDTLDL +P  FRDL KPIGAL+P+RL AFLDR+ + +   DP +P FMYGSHYSSAG+VLHYL+RQEP+TSM I L  G FDCPDRLFF+V +     +  SM+DVKEL+PE FC+PE  LN+N    G LQ+G   VD V LPP   G    FVR  + ALES+ VS++LH+WVDL+FG KQ  P A+ EA N+F+YLT
Sbjct:   98 RWTHLWQTRQISNFEYIMRLNVIAGRSYNDLTQ----YPVFPWVISDYTSDTLDLSNPATFRDLEKPIGALSPDRLEAFLDRYQSLKLVPDPQMPPFMYGSHYSSAGVVLHYLIRQEPYTSMAIDLHDGRFDCPDRLFFNVHESYASCTT-SMTDVKELIPELFCMPEMLLNSNKFGFGTLQDGNA-VDSVVLPPWAKGDPWEFVRLHKEALESEHVSSNLHKWVDLIFGYKQRGP-ASEEANNVFFYLT 340

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7S1TYD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYD4_9STRA)

HSP 1 Score: 294 bits (753), Expect = 5.000e-95
Identity = 151/248 (60.89%), Postives = 185/248 (74.60%), Query Frame = 1

Query:    4 RYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFE-DPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            R+T LWR R++SNFEYLM LNI AGRSYND+TQ    YPVFPW++ D+ SD LD DDP  FRDL +PIGAL+ +RL AF++R+ + + DP +P FMYGSHYSSAG+VLHYL+RQEPFTS+ + L  G FDCPDRLF+++ +  +   + SM+DVKEL+PEFF LPE  LN NAL LG LQEG   VDDV LPP  +G A   VR  R ALESD VS  LHEW+DL+FG KQ  P+A   A N+F+YLT
Sbjct:    7 RWTQLWRTRQISNFEYLMRLNIIAGRSYNDMTQ----YPVFPWIIADYESDELDFDDPSTFRDLMRPIGALDADRLEAFVERYKSLKGDPHMPAFMYGSHYSSAGVVLHYLLRQEPFTSLAVDLHDGRFDCPDRLFYNLRESFKSC-RTSMTDVKELIPEFFFLPEMLLNTNALGLGELQEGAA-VDDVVLPPWANGDAWECVRLQRAALESDYVSERLHEWIDLIFGYKQRGPEAEA-ANNVFFYLT 247

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7S2W4H8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4H8_9STRA)

HSP 1 Score: 297 bits (760), Expect = 1.610e-94
Identity = 154/254 (60.63%), Postives = 189/254 (74.41%), Query Frame = 1

Query:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPD----VFRDLTKPIGALNPERLAAFLDRFYNF-EDPAIPK-FMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            ++YT+ W+ R MSNFEYL+ LN+ AGRS+ND+TQ    YPVFPWV+ D+TSD LDLDD +     FRDL+KP+GA NP+RL  FLDR+     DP +P  F+YG+HYSS G VLH L+RQEPFT++ I LQGGHFDCPDRLFFDVA+  +  +  SMSDVKEL+PE++C PE F N N+  LGHLQ G   + DV+LPP   GSAQ FVR  RRALES+ VS HLHEW+DL+FG KQ  P A  EA N+F+YLT
Sbjct:   48 SKYTEAWQSRHMSNFEYLLRLNMIAGRSFNDLTQ----YPVFPWVVADYTSDKLDLDDVENAKGTFRDLSKPMGAQNPDRLQQFLDRYRELGSDPDLPPPFLYGTHYSSEGSVLHLLIRQEPFTTLSIDLQGGHFDCPDRLFFDVAESWKCCNS-SMSDVKELIPEWYCFPEMFENGNSWNLGHLQTG-RSIGDVKLPPWARGSAQEFVRLSRRALESEYVSLHLHEWIDLIFGDKQRGPKAE-EAHNVFHYLT 294

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7S2SAH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAH3_9STRA)

HSP 1 Score: 293 bits (750), Expect = 4.060e-94
Identity = 153/249 (61.45%), Postives = 184/249 (73.90%), Query Frame = 1

Query:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFED-PAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            +R T+LWR+RK+SNF+YLM LNI AGR++NDITQ    YPVFPWVL DFTS+TLDLDD   FRDL+KP+GA+NP+RLA  ++RF NF+  P   KF+YGSHYSS G+VLHYL+RQEPFT+M I LQ G FDCPDRLFFDVA       + S SDVKELVPEFF  PE FLN N  PLG  Q     + +V+LPP   GS   FVR  R ALES+ VS +LH WVDL+FG KQ  P+A  +A N+F+YL+
Sbjct:  119 SRLTELWRKRKISNFQYLMQLNIMAGRTFNDITQ----YPVFPWVLADFTSETLDLDDLRTFRDLSKPVGAINPDRLAQLIERFNNFDGFPEEEKFLYGSHYSSPGVVLHYLIRQEPFTTMAIELQSGRFDCPDRLFFDVAGCWNSCLE-STSDVKELVPEFFTCPEIFLNTNHFPLGETQSK-LNISNVKLPPWAKGSPYEFVRLHRLALESEYVSQNLHLWVDLIFGYKQRGPEAT-KAHNVFHYLS 360

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7S2GV16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV16_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.730e-93
Identity = 145/242 (59.92%), Postives = 180/242 (74.38%), Query Frame = 1

Query:   40 NFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPD----VFRDLTKPIGALNPERLAAFLDRFYNFEDPA---IPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            N+EYL+ LN+ AGRSYNDITQ    YPV PWV++D+TS +LD  +P     +FRDL KPIGALN  RL +FL+R+ +++DP+   +PKFMYGSHYSSAGIVLH+L+R EPFTS+ + LQGGHFDC DRLFFDV +  +     SMSDVKELVPE++CLP+ F N N   LG LQEG  RVD+VRLPP   G A  FVR  R ALES+ VS +LH W+DL+FG KQ   DA ++A N+F+YLT
Sbjct:    1 NYEYLLQLNMIAGRSYNDITQ----YPVMPWVIKDYTSKSLDFTNPSKWSTIFRDLEKPIGALNENRLQSFLERYEDYDDPSNPEMPKFMYGSHYSSAGIVLHFLLRLEPFTSLALELQGGHFDCADRLFFDVNESWQGCCSTSMSDVKELVPEWYCLPDMFHNTNEWKLGELQEGRGRVDNVRLPPWAKGDAHEFVRINRTALESEYVSTNLHHWIDLIFGYKQQGDDA-IKAYNVFHYLT 237

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A7S2W5V3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5V3_9STRA)

HSP 1 Score: 299 bits (765), Expect = 9.180e-93
Identity = 155/254 (61.02%), Postives = 190/254 (74.80%), Query Frame = 1

Query:    1 ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPD----VFRDLTKPIGALNPERLAAFLDRFYNF-EDPAIPK-FMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            ++YT+ W+ R MSNFEYL+ LN+ AGRS+ND+TQ    YPVFPWV+ D+TSD LDLDD +     FRDL+KP+GA NP+RL  FLDR+     DP +P  F+YG+HYSS G VLH L+RQEPFT++ I LQGGHFDCPDRLFFDVA+  +  +  SMSDVKEL+PE++C PE F N N+  LGHLQ G   + DV+LPP   GSAQ FVR  RRALES+ VS HLHEW+DL+FG KQ    AA++A NLFYYLT
Sbjct:   48 SKYTEAWQSRHMSNFEYLLRLNMIAGRSFNDLTQ----YPVFPWVVADYTSDKLDLDDVENAKGTFRDLSKPMGAQNPDRLQQFLDRYRELGSDPDLPPPFLYGTHYSSEGSVLHLLIRQEPFTTLSIDLQGGHFDCPDRLFFDVAESWKCCNS-SMSDVKELIPEWYCFPEMFENGNSWNLGHLQTG-RSIGDVKLPPWARGSAQEFVRLSRRALESEYVSLHLHEWIDLIFGYKQQGK-AAVDAQNLFYYLT 294

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BLAST of jgi.p|Trimin1|174518 vs. uniprot
Match: A0A482SVM8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVM8_9ARCH)

HSP 1 Score: 304 bits (779), Expect = 2.410e-91
Identity = 152/246 (61.79%), Postives = 189/246 (76.83%), Query Frame = 1

Query:    7 YTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFTSDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPAIPKFMYGSHYSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLSMSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQAFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT 744
            YT+LWRRR MSNF+YLM LN+ AGRSYNDITQ    YP+FPWVL DFTS TLDL +P ++R+L+ PIGALNP RL  FLDR+  F+D  +PKFMYGSHYSSAGIVL+YLVRQEPFTS+ IALQ G FDCPDR+FF++ +  +  +  SMSDVKE++PE F  P   +N++ LPLG LQ+GG+ VD V LPP  +    +F+R  R ALES+ VS H+H W+DLVFG KQ+   AA++A N+FYYLT
Sbjct: 2375 YTELWRRRLMSNFDYLMKLNMIAGRSYNDITQ----YPIFPWVLTDFTSPTLDLSNPKIYRNLSLPIGALNPARLREFLDRYSTFDDENVPKFMYGSHYSSAGIVLYYLVRQEPFTSLAIALQNGRFDCPDRIFFNIEKTWQGCNS-SMSDVKEMIPEMFYNPNVLINSSKLPLGELQDGGD-VDSVSLPPWCNNDPYSFIRIHREALESEYVSEHIHSWLDLVFGFKQTG-QAAVQAHNVFYYLT 2613

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|174518 vs. uniprot

BLAST of jgi.p|Trimin1|174518 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZEA7_9STRA	4.400e-183	100.00	BEACH domain-containing protein (Fragment) n=1 Tax...	[more]
A0A812Y341_SYMMI	5.440e-99	62.25	Rg protein (Fragment) n=1 Tax=Symbiodinium microad...	[more]
A0A7S3UM61_HETAK	8.180e-96	61.90	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7R9YE59_9STRA	1.870e-95	60.00	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]
A0A7S1TYD4_9STRA	5.000e-95	60.89	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A7S2W4H8_9STRA	1.610e-94	60.63	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A7S2SAH3_9STRA	4.060e-94	61.45	Hypothetical protein (Fragment) n=1 Tax=Eucampia a...	[more]
A0A7S2GV16_9STRA	1.730e-93	59.92	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2W5V3_9STRA	9.180e-93	61.02	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A482SVM8_9ARCH	2.410e-91	61.79	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_115	contig	Contig_115:140390..145075 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|174518\|e_gw1.115.75.1
BRITE	ko00000,ko00001,ko04131
KEGG Pathway	ko04071,map04071
KEGG ko	ko:K18953,ko:K22262
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007033,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0016050,GO:0033298,GO:0044424,GO:0044444,GO:0044464,GO:0071840
Description	platelet formation
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG1787@1\|root,KOG1787@2759\|Eukaryota
Evalue	5.41e-90
Seed ortholog	2880.D7FJ07
Hectar predicted targeting category	other localisation
Ec32 ortholog description	WD40 repeat
Ec32 ortholog	Ec-07_004900.1
TranscriptId	174840
Track	FilteredModels1
ProteinId	174518

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|174518	gene_11652	Tribonema minus UTEX_B_3156	gene	Contig_115 140390..145075 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|174518	Trimin1\|174518\|e_gw1.115.75.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_115 140390..145075 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11652_5	exon_11652_5	Tribonema minus UTEX_B_3156	exon	Contig_115 140390..140558 -
exon_11652_4	exon_11652_4	Tribonema minus UTEX_B_3156	exon	Contig_115 140841..140972 -
exon_11652_3	exon_11652_3	Tribonema minus UTEX_B_3156	exon	Contig_115 142399..142574 -
exon_11652_2	exon_11652_2	Tribonema minus UTEX_B_3156	exon	Contig_115 144004..144159 -
exon_11652_1	exon_11652_1	Tribonema minus UTEX_B_3156	exon	Contig_115 144962..145075 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11652	CDS_11652	Tribonema minus UTEX_B_3156	CDS	Contig_115 144962..145075 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_115:140390..145075-
coding sequence from alignment at Contig_115:140390..145075-

spliced messenger RNA

>mRNA_11652 ID=mRNA_11652|Name=jgi.p|Trimin1|174518|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_115:140390..145075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGCGCTACACGGACCTCTGGCGGCGCCGCAAGATGTCCAACTTCGAGTA
CCTCATGCACCTCAACATTGCCGCGGGGCGGTCGTACAACGACATCACCC
AGGCGAGTCATCGATACCCCGTGTTCCCCTGGGTCCTGCAAGACTTCACC
AGCGACACGCTAGACCTTGACGATCCCGACGTGTTTCGCGACCTGACCAA
GCCGATTGGCGCGCTGAATCCCGAGCGCCTCGCGGCCTTCCTGGACCGCT
TCTACAACTTCGAAGATCCGGCGATACCCAAGTTCATGTACGGCAGCCAC
TACAGCAGCGCGGGCATCGTGCTGCACTACCTCGTGCGCCAGGAGCCCTT
CACGTCCATGCACATTGCGCTGCAGGGGGGGCACTTTGACTGCCCCGACA
GGCTGTTCTTCGACGTGGCGCAGGTGCGCAGGCCCGTTTCACAACTCAGC
ATGAGCGACGTCAAGGAGCTCGTGCCCGAGTTCTTCTGCCTCCCGGAGGC
CTTCCTCAACGCCAACGCCCTGCCCCTGGGGCACCTGCAGGAGGGCGGAG
AGCGCGTAGATGACGTCAGGCTGCCGCCCAGCGGCAGCGGCAGCGCGCAG
GCGTTCGTGCGCACGATGCGACGCGCGCTGGAGAGCGACGCCGTGAGCGC
GCACCTGCACGAGTGGGTTGACCTGGTCTTTGGCGCCAAGCAGTCGCCGC
CGGACGCCGCGCTCGAGGCGTGCAACCTCTTCTACTACCTCACGTGA

protein sequence of jgi.p|Trimin1|174518

>Trimin1|174518|e_gw1.115.75.1 ID=Trimin1|174518|e_gw1.115.75.1|Name=jgi.p|Trimin1|174518|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
ARYTDLWRRRKMSNFEYLMHLNIAAGRSYNDITQASHRYPVFPWVLQDFT
SDTLDLDDPDVFRDLTKPIGALNPERLAAFLDRFYNFEDPAIPKFMYGSH
YSSAGIVLHYLVRQEPFTSMHIALQGGHFDCPDRLFFDVAQVRRPVSQLS
MSDVKELVPEFFCLPEAFLNANALPLGHLQEGGERVDDVRLPPSGSGSAQ
AFVRTMRRALESDAVSAHLHEWVDLVFGAKQSPPDAALEACNLFYYLT*

mRNA from alignment at Contig_115:140390..145075-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11652 ID=mRNA_11652|Name=jgi.p|Trimin1|174518|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4686bp|location=Sequence derived from alignment at Contig_115:140390..145075- (Tribonema minus UTEX_B_3156 )
GCGCGCTACACGGACCTCTGGCGGCGCCGCAAGATGTCCAACTTCGAGTA
CCTCATGCACCTCAACATTGCCGCGGGGCGGTCGTACAACGACATCACCC
AGGCGAGTCATCGAGTCATTGAGTCAGTGGGATCGTGAGTCGAGTCGGTG
GCCGTTGGCGCCCTCGCGCGCTTCTTGGGCTGCTTGGCGGTGACAATCAG
CAAGAGACTTTAATGAGTGATGTTCCGTTTCACGATAGTGTGTACTGCGT
TGTGAGCTGTCGTCCCGAAACTGCTGCCTTCAGATCAGTTCAAGTCGGCA
GCGGATTTGTGAAGTACAAGCGCGGCCACGTTCAATGCTACGCGTCACCA
ACACTACACACTGCCTGCAGATCCGCATGCACAGATCTGAACCTATCTAC
TTCAAAGTGACTATATGTCGGTCATCGGAGCTGGCCCGTAACTCCCTAGG
CACCGCTGAGTCTCAGAAGCAGTTACCCCCTCCAATCTCCAACACTTGCT
GGTATGGGGGTAATTGTCTCCACAATCACAAACTGACTGGTGACGTCATG
CCACAATGCCCCCACCCCACCCCCTCTCCACCAGCCCTCAAGCACTCCCC
CCCCTCCCCACCCCCCCAACCCCCCCTACCCGCACACGCAGTACCCTGTG
TTCCCCTGGGTCCTGGAAGACTTCACCAGCGACACGCAAGACCTCGAGGA
CCGATTCTGGTCTGCAACTCGCTATGCACCGGTTTTGCAGGAGGCAGTTG
CCCCCACCAGTTTCTACCGCTCGCTTGTTTTGTGAAATTGTCTCCCACAA
ACTGACTGGCGACATCATAGCCACAATGCCCCCCCCCCCCCCCCCCCCTC
TCCACTGGACTCCATTGACACTCACCCCCCCCCCCCCCCCCTGACTCCCC
TTACCCGCACACACAGTACCCCGTGTTCCCCTGGGTCCTGCAAGACTTCA
CCAGCGACACGCTAGACCTTGACGATCCCGACGTGTTTCGCGACCTGACC
AAGCCGATTGGCGCGCTGAATCCCGAGCGCCTCGCGGCCTTCCTGGACCG
CTTCTACAACTTCGAAGATCCGGTACGTTGATATGAATGTTGGTAAACGT
GTGATGTGTCCTGTGCATGGGCATACAGTAGGCTTCACACCTGCAACCTC
TTTGTAGTGCAAGAGGCGAGCTTCTTATTGACCGTGACCCTAACTCTAAC
CCTAAAAGATCCGGTACGTTGCGCATGGAATAAAGAAGATACACGTACGC
GTGCGTGACTGCGCCACGCGTCTCATGCTGATGGCATACTATCTGCTAAT
TATATGTTTCAGAACTGACTGCTTCTATAACCTTAGAGATCCGGTACGTT
GGGAGGACGCGCACGGAAAAAGAAAACACGTACGCGTGCGTGACTTGGGC
CACGCTGATGGCATTCAAAGTGCTCATTGTGATGTTTGTAGCATACTGAC
TGCTTGCACAACTTTCAAGATCCGGTACGTTGATATGTATTTTGGTGAGC
GTGTGATGTGTCCAGTGCATGGGCATAGGCTTCACACCTGCACGCTCTTT
GTAGTGCAAGCGGCGAGCTTCTTCTTGACCCTGACCCTAACCCTAACCCT
TGCTATAGGGTTAGAGAAGATGGGAAGACGTGCACGGGCCGCCGCGCACG
CATGCGTGACTACAGCCACACGTTTCACGCCAATAGCGCACTGTCTATCG
TGAAGTGTACTTGCTTGTACAAGTGTGATGTGCCCAGTGCATGGGTGCGG
GCCCACCTGCAAGCTTCGGGAGCGCAGGGGGCTAACCCTAAACGTACTCC
CTAGGGCTAGGGTTAGGGTTAGGGTCGAGGTCGCAGCTGCGCAGCTGCGG
CAATGACACATACGGACACTCTGCAGGCAGCCGCAGGTTTGATATATATA
TTATTTTCCTTGTAATTCGTATGAGGGGTGAAAGCACCGCGTACTCACTT
TGAGAGACCTCCCCCACCTCCGCTCCCCCTACAACTGACCGCAGGCAACA
CCCACGTTCATGAACGGCAGCCACTATGTACAGCAGCGCTGTACTCCTCG
AGTTCATAGTATGCAATCCTGAGGCGCACTGACATGCCACGTCAGTGCGC
CCGAGCCATCGCCACTAGTCTCCGTGCAGGTCAAGAGATTTCTATCCTGA
CGCACACTATAATTACCCCCCCCCCCCCCCCGCCCACCCCAAAACCGACC
GTCGTCTCGTGCAGGTCAGGAGATGTTCATCCCGATACGCGCTGTAATAC
CTCCATCCCCCCTGCCCCCCCTTCTGCCCCCCCTCCCCCTCAATACAGCT
TGCAGGCGATACCCAAGTTCATGTATAGCAGCCACTACAGCAGCGCTGTA
CTCCTCGAGTTCATAGTATGCAGTCCTGATGCGCACATACATTCCGCGTC
CGTGCGCTTGAGGCATCGCCACCAATCTAGTGAAGGTCAGGAGATCTTGA
TCCTGACAAATGCTATTATACCCCCCCCCCTTTCCCCACAACCGACCACA
GGCGATACCCAAGTTCATGTACGGCAGCCACTACAGCAGCGCGGGCATCG
TGCTGCACTACCTCGTGCGCCAGGAGCCCTTCACGTCCATGCACATTGCG
CTGCAGGGGGGGCACTTTGACTGCCCCGACAGGCTGTTCTTCGACGTGGC
GCAGGTGCGCAGGCCCGTTTCACAACTGTGAAGTCATGCCCGTCGGATCA
TGTATAATTAAATCCTGGCTCACGCATCAGCTTGGTGTTGAACGTTGCGC
TGACTGCCCTGACAGGCTGTTCTTCGCTGTGGCGCAGGTGCGTGGCTGTG
AATTCACACCCGTTCATTCATGGGTGTTCATCATGCATTCACGCAGCATT
GATTTGAATGGTCCAGACTGGCTGTTCTTCGATGTGGCGCAGGTGCGTGG
CTGAGAATTCACACCCGTTTATTCATGCGTGGTCATCCAGGCGTTCTCGC
AGCATTGATGGGGACAGGCTGTTCTTCGATGTTGCGCAGGTGTGTGGCCG
CTGAAGTCATGCCCGTTCATTCATGCGTGTTCGTTCATGCATTCATGCAG
CATTGATTTTAATGTTCCAAACAGGCTGTTCATCGACGTGGCGCAGGTGC
GCGACCGTGAATTCATGCCCGTTCATGCTTGTCAGATGATTCATGCATGC
TCGATCACGAGTTGACACTGCTGTGAAATCCACACTATCTGCCCTGACAG
GCTGTGCTTCAACGTGGCGCAGGTGCGCAGCCCCGTTTCTCAACTGTGAA
TTCACGCCTGTTGATTGGTTCATGCATGCTGGTTCATGCACTTGTACATT
GTCCGAAGGCACAGTAACTGGCCGGATGGCTGGGCCCTTGACGGGGCGCA
GCAGGCACGCAGTCGTTTCATGCCTGTGAATGCATGCTTATAAAAATATG
CATTCACATTAAGTGGCCGGATGGTTGGTTTTCGACGTGATGCAAGTGCG
CACTCGTTTCTTTCAAGTTCGTGAAACCACGCCCATATTTATGCGTACTC
ATTCATGCATTCATGCGCAGCGCGTTGACTGCTGCAGCAGTGCTCATCTG
CAATGTAGCAGCCAGGGTACGGCGCGCGCTGCTGCTGCGCGATGTCGCCA
TTCCCGTCTGGCATGTGCATGGTGCATGTGCGCGTGCTGTGCTGACTGCA
TTGATCATAGCCTCGGCATTGCTCAAGCTCCCCCATGCAGTGCGAAAGCT
GTACTACCTATGCAGCTCAGCTCGCCTCAGGAGCAGCACGCACGCGATTC
TAAGCGTCCTCACGTATGCTGATGTGCATCAAACATATTCCCAAAATACG
CATGTAGAGGATTGCGACATACTCTGGAGTGATTTCAACTCTTTACTGCT
TCCTACCCCGCCGCCCCCCGCCGCCGCCGCCGCCGCTGCCGCAGAGATGC
GGCTGCCTCAGCAGCATGAGGGACGTCAAGGAGCGTCACCACCATGACTT
TGTATGCTAATACGCATCAAACATGCTCCCGAAGTACAGTATGCCTATGA
CCACTCGACATAGAAGCACTTGAGTGATTTCATCGTTGTTCCCCTTCTGA
CCGTGCCCCCCGCCGCCGCCGCCGCCGCCGCAGAGCTGGCGCGGCTGCCT
CAGCAGCATGAGCGACGTCAAGGAGCTCGTGCCCGAGTTCTTCTGCCTCC
CGGAGGCCTTCCTCAACGCCAACGCCCTGCCCCTGGGGCACCTGCAGGAG
GGCGGAGAGCGCGTAGATGACGTCAGGCTGCCGCCGTGGGCCTGCACCGG
CGCGCAGCGGCAGCGCGGCAGCGGCGGCGGCGGCGGCGGCAGCAGCGCGC
ATCGCCGCGACGTCCTGCGGAATGGCGCGCACGCGGAGCGCGGCAGCGGC
GGCGGCGGCAGCGGCAGTGTCAGCACTCAGCATGGCGTCGGCGGCGTCGG
CGGCGGCGGCAGCGGCGGCGACGGCGGCAGCGGCAGCGGCGGCGGCAGCG
GCGGCAGCAGCAGTGGCGGCAGCAGTGGCGGCAGCAGTGGCGGCGGCGGC
GGCAGCGGGGGCGGCAGCAGCGGCAGCGGCAGCGCGCAGGCGTTCGTGCG
CACGATGCGACGCGCGCTGGAGAGCGACGCCGTGAGCGCGCACCTGCACG
AGTGGGTTGACCTGGTCTTTGGCGCCAAGCAGTCGCCGCCGGACGCCGCG
CTCGAGGCGTGCAACCTCTTCTACTACCTCACGTGA

Coding sequence (CDS) from alignment at Contig_115:140390..145075-

>mRNA_11652 ID=mRNA_11652|Name=jgi.p|Trimin1|174518|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_115:140390..145075- (Tribonema minus UTEX_B_3156 )
GCGCGCTACACGGACCTCTGGCGGCGCCGCAAGATGTCCAACTTCGAGTA
CCTCATGCACCTCAACATTGCCGCGGGGCGGTCGTACAACGACATCACCC
AGGCGAGTCATCGATACCCCGTGTTCCCCTGGGTCCTGCAAGACTTCACC
AGCGACACGCTAGACCTTGACGATCCCGACGTGTTTCGCGACCTGACCAA
GCCGATTGGCGCGCTGAATCCCGAGCGCCTCGCGGCCTTCCTGGACCGCT
TCTACAACTTCGAAGATCCGGCGATACCCAAGTTCATGTACGGCAGCCAC
TACAGCAGCGCGGGCATCGTGCTGCACTACCTCGTGCGCCAGGAGCCCTT
CACGTCCATGCACATTGCGCTGCAGGGGGGGCACTTTGACTGCCCCGACA
GGCTGTTCTTCGACGTGGCGCAGGTGCGCAGGCCCGTTTCACAACTCAGC
ATGAGCGACGTCAAGGAGCTCGTGCCCGAGTTCTTCTGCCTCCCGGAGGC
CTTCCTCAACGCCAACGCCCTGCCCCTGGGGCACCTGCAGGAGGGCGGAG
AGCGCGTAGATGACGTCAGGCTGCCGCCCAGCGGCAGCGGCAGCGCGCAG
GCGTTCGTGCGCACGATGCGACGCGCGCTGGAGAGCGACGCCGTGAGCGC
GCACCTGCACGAGTGGGTTGACCTGGTCTTTGGCGCCAAGCAGTCGCCGC
CGGACGCCGCGCTCGAGGCGTGCAACCTCTTCTACTACCTCACGTGA