mRNA_11634 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|9725
Unique NamemRNA_11634
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|9725 vs. uniprot
Match: A0A836CLZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ5_9STRA)

HSP 1 Score: 360 bits (923), Expect = 9.970e-125
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:   58 MRASRCDGIGLCHHGAAARAQVPDLLLYVVVAVGPAPVVLLETIRESACAGQFAPSTAVVPGSSSRAVPLKTSLRECFERSPVSPLSQERRACVCHLSCDSSRKWFFACIQVHYHMLPQAHTTRTCTCSFTERRCAFWLYRRYHAAEFPQNTKSSARWQLRRAVALLCCQRTTDF 582
            MRASRCDGIGLCHHGAAARAQVPDLLLYVVVAVGPAPVVLLETIRESACAGQFAPSTAVVPGSSSRAVPLKTSLRECFERSPVSPLSQERRACVCHLSCDSSRKWFFACIQVHYHMLPQAHTTRTCTCSFTERRCAFWLYRRYHAAEFPQNTKSSARWQLRRAVALLCCQRTTDF
Sbjct:    1 MRASRCDGIGLCHHGAAARAQVPDLLLYVVVAVGPAPVVLLETIRESACAGQFAPSTAVVPGSSSRAVPLKTSLRECFERSPVSPLSQERRACVCHLSCDSSRKWFFACIQVHYHMLPQAHTTRTCTCSFTERRCAFWLYRRYHAAEFPQNTKSSARWQLRRAVALLCCQRTTDF 175
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|9725 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CLZ5_9STRA9.970e-125100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_115contigContig_115:30910..31639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|9725|CE9724_50
Hectar predicted targeting categoryother localisation
TranscriptId10047
TrackFilteredModels1
ProteinId9725
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9725gene_11634Tribonema minus UTEX_B_3156 geneContig_115 30910..31639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11634_1exon_11634_1Tribonema minus UTEX_B_3156 exonContig_115 30910..31639 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11634UTR3_11634Tribonema minus UTEX_B_3156 three_prime_UTRContig_115 30910..31054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11634CDS_11634Tribonema minus UTEX_B_3156 CDSContig_115 31055..31582 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11634UTR5_11634Tribonema minus UTEX_B_3156 five_prime_UTRContig_115 31583..31639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9725Trimin1|9725|CE9724_50Tribonema minus UTEX_B_3156 polypeptideContig_115 31055..31582 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11634 ID=mRNA_11634|Name=jgi.p|Trimin1|9725|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=730bp|location=Sequence derived from alignment at Contig_115:30910..31639- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCTGCGCTGCGCGCAAGAGTCGTTTCGTTCTCCCCAGACTGTTCAT
CTGGGGAATGCGCGCGAGCCGCTGTGACGGGATTGGTCTGTGTCATCATG
GCGCTGCTGCTCGGGCGCAAGTGCCAGATCTTCTGCTGTACGTAGTGGTT
GCGGTTGGCCCTGCGCCCGTAGTGCTCCTCGAAACGATCCGCGAGAGCGC
ATGCGCCGGTCAGTTCGCGCCTTCAACAGCAGTAGTGCCAGGGTCTTCAA
GCCGTGCCGTTCCCTTGAAAACTTCCCTAAGAGAGTGCTTTGAGCGTTCC
CCAGTCAGTCCACTGTCCCAGGAACGGCGCGCGTGTGTGTGTCACCTTAG
CTGCGATAGTTCAAGGAAGTGGTTTTTTGCGTGCATCCAGGTGCACTACC
ATATGTTGCCACAGGCACATACCACAAGGACCTGCACTTGCAGCTTCACG
GAGCGCCGGTGCGCCTTCTGGCTGTACCGCCGATACCACGCGGCAGAATT
CCCCCAAAACACAAAGTCCTCTGCGCGGTGGCAGCTTCGTCGCGCTGTCG
CTCTCCTGTGCTGCCAGCGTACAACAGATTTTTGACTTGCACAGAGAGGT
ACGCGTCGCAGTTACAACAAGCAATCACTCCAAGGGGACTGATTTCCCTC
CCCTCCCCCCCCCCCCCCCCCCGCGTCTTTCCATACGTACGTATTATACC
CCGGCGCTTGGCTGCTGCCTCTGTTCTCAT
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protein sequence of jgi.p|Trimin1|9725

>Trimin1|9725|CE9724_50 ID=Trimin1|9725|CE9724_50|Name=jgi.p|Trimin1|9725|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp
MRASRCDGIGLCHHGAAARAQVPDLLLYVVVAVGPAPVVLLETIRESACA
GQFAPSTAVVPGSSSRAVPLKTSLRECFERSPVSPLSQERRACVCHLSCD
SSRKWFFACIQVHYHMLPQAHTTRTCTCSFTERRCAFWLYRRYHAAEFPQ
NTKSSARWQLRRAVALLCCQRTTDF*
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mRNA from alignment at Contig_115:30910..31639-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11634 ID=mRNA_11634|Name=jgi.p|Trimin1|9725|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=730bp|location=Sequence derived from alignment at Contig_115:30910..31639- (Tribonema minus UTEX_B_3156 )
CTGCGCTGCGCTGCGCGCAAGAGTCGTTTCGTTCTCCCCAGACTGTTCAT
CTGGGGAATGCGCGCGAGCCGCTGTGACGGGATTGGTCTGTGTCATCATG
GCGCTGCTGCTCGGGCGCAAGTGCCAGATCTTCTGCTGTACGTAGTGGTT
GCGGTTGGCCCTGCGCCCGTAGTGCTCCTCGAAACGATCCGCGAGAGCGC
ATGCGCCGGTCAGTTCGCGCCTTCAACAGCAGTAGTGCCAGGGTCTTCAA
GCCGTGCCGTTCCCTTGAAAACTTCCCTAAGAGAGTGCTTTGAGCGTTCC
CCAGTCAGTCCACTGTCCCAGGAACGGCGCGCGTGTGTGTGTCACCTTAG
CTGCGATAGTTCAAGGAAGTGGTTTTTTGCGTGCATCCAGGTGCACTACC
ATATGTTGCCACAGGCACATACCACAAGGACCTGCACTTGCAGCTTCACG
GAGCGCCGGTGCGCCTTCTGGCTGTACCGCCGATACCACGCGGCAGAATT
CCCCCAAAACACAAAGTCCTCTGCGCGGTGGCAGCTTCGTCGCGCTGTCG
CTCTCCTGTGCTGCCAGCGTACAACAGATTTTTGACTTGCACAGAGAGGT
ACGCGTCGCAGTTACAACAAGCAATCACTCCAAGGGGACTGATTTCCCTC
CCCTCCCCCCCCCCCCCCCCCCGCGTCTTTCCATACGTACGTATTATACC
CCGGCGCTTGGCTGCTGCCTCTGTTCTCAT
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Coding sequence (CDS) from alignment at Contig_115:30910..31639-

>mRNA_11634 ID=mRNA_11634|Name=jgi.p|Trimin1|9725|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_115:30910..31639- (Tribonema minus UTEX_B_3156 )
ATGCGCGCGAGCCGCTGTGACGGGATTGGTCTGTGTCATCATGGCGCTGC
TGCTCGGGCGCAAGTGCCAGATCTTCTGCTGTACGTAGTGGTTGCGGTTG
GCCCTGCGCCCGTAGTGCTCCTCGAAACGATCCGCGAGAGCGCATGCGCC
GGTCAGTTCGCGCCTTCAACAGCAGTAGTGCCAGGGTCTTCAAGCCGTGC
CGTTCCCTTGAAAACTTCCCTAAGAGAGTGCTTTGAGCGTTCCCCAGTCA
GTCCACTGTCCCAGGAACGGCGCGCGTGTGTGTGTCACCTTAGCTGCGAT
AGTTCAAGGAAGTGGTTTTTTGCGTGCATCCAGGTGCACTACCATATGTT
GCCACAGGCACATACCACAAGGACCTGCACTTGCAGCTTCACGGAGCGCC
GGTGCGCCTTCTGGCTGTACCGCCGATACCACGCGGCAGAATTCCCCCAA
AACACAAAGTCCTCTGCGCGGTGGCAGCTTCGTCGCGCTGTCGCTCTCCT
GTGCTGCCAGCGTACAACAGATTTTTGA
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