mRNA_11633 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|9722
Unique NamemRNA_11633
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A836CN42_9STRA (Glutaredoxin subgroup I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN42_9STRA)

HSP 1 Score: 234 bits (597), Expect = 9.460e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
Query:   73 MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSNLSKM 420
            MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSNLSKM
Sbjct:    1 MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSNLSKM 116          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A9NP69_PICSI (Glutaredoxin domain-containing protein n=2 Tax=Picea sitchensis TaxID=3332 RepID=A9NP69_PICSI)

HSP 1 Score: 103 bits (256), Expect = 2.890e-24
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   16 VARGLFSSRRVYCVPTVRSMSSSSGEAVK-AVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELD--GHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVR 399
            V R + +SR    V  +R+ + SSG  +K +++ +I+   V+VY K  CP+C + K L EDL ++P    +ELD  G      Q AL  LTGQ TVPNVFIGG H+GGC DTM   Q+G+L  LL  AGV+
Sbjct:   51 VLRQVANSRSYGAVGPIRATAGSSGSQIKESIETEINENPVVVYSKTWCPYCQQAKGLFEDLGVKPY--VVELDELGAAERHVQNALEGLTGQSTVPNVFIGGKHIGGCSDTMELHQNGELIPLLSAAGVK 179          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A2P6U4E8_CHLSO (Glutaredoxin family isoform 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U4E8_CHLSO)

HSP 1 Score: 102 bits (254), Expect = 3.500e-24
Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   58 PTVRSM---SSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRS 402
            P  R+M   +SS  +    VQ K     V+VY K  CP+C  VK L E L +  +   +ELD    G+  Q AL  +TG+RTVP VF+GG HVGGCDDT+AA  SGKLK LL+ AGV++
Sbjct:   44 PGARAMGAAASSEADFTAMVQQKNADNPVMVYSKTYCPYCSEVKSLFERLGVNAK--VVELDELADGSKVQEALATVTGRRTVPQVFVGGNHVGGCDDTVAAYNSGKLKTLLEAAGVQA 160          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A1D2A3R0_AUXPR (Glutaredoxin domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3R0_AUXPR)

HSP 1 Score: 100 bits (250), Expect = 1.310e-23
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   61 TVRSMSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGV 396
            T R+MS   G+ V  +++K     V+VY K  CP+C  VK L + L ++ +   IELD    G   Q+AL ++ G++TVP VF+GG H+GGCDDTMAA  SGKLKE+L +AG+
Sbjct:   50 TTRAMS---GDLVATLKEKNKKNPVVVYSKTYCPYCAEVKSLFQKLKVDAK--VIELDSLADGNDVQQALFEVVGKKTVPQVFVGGQHIGGCDDTMAANDSGKLKEMLKEAGL 157          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A0D6R8L1_ARACU (Glutaredoxin domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R8L1_ARACU)

HSP 1 Score: 98.6 bits (244), Expect = 4.350e-23
Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   52 CVPTVRSMSSSSGEAVKAVQDK----IDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAG 393
            C+  V S SS S E++    +K    + S  V+V+ K  CP+C +VK LL  L  + +   +ELD    GA  Q AL + TGQRTVPNVFIGGTH+GGCDDT+A   SGKL  LL +AG
Sbjct:   11 CMGLVAS-SSKSPESITTAMEKAKAVVSSNPVVVFSKTYCPYCTQVKQLLSRLGAKTK--VVELDTESDGADIQSALKEWTGQRTVPNVFIGGTHIGGCDDTVAKHNSGKLVPLLSEAG 126          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A4S8JR44_MUSBA (Glutaredoxin domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8JR44_MUSBA)

HSP 1 Score: 97.8 bits (242), Expect = 4.680e-23
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   94 AVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSS 405
            A++  ++ + S  V+V+ K  CPFC RVK LL+ L    +   IELD    G+  Q AL + TGQRTVPNVFIGG H+GGCDDT+A  Q GKL+ LL +AG  +S
Sbjct:    2 ALEKAKETVSSNPVVVFSKTFCPFCVRVKKLLDQLGARYKA--IELDVESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDDTLAKHQQGKLEPLLIEAGALAS 104          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A6A2XY04_HIBSY (Glutaredoxin-C5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XY04_HIBSY)

HSP 1 Score: 98.2 bits (243), Expect = 2.140e-22
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   61 TVRSMSSSSGEAVK-AVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELD--GHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRS 402
            ++R M+SSSG  ++ +V+  +    V+VY K  CP+   VK L + L ++P    IELD  G  G+  Q  L QLTGQRTVPNVFIGG HVGGC DT    Q+G+L+ LL  A  +S
Sbjct:   58 SIRGMASSSGSDLEESVKKTVADNPVVVYSKSWCPYSSEVKSLFKKLGVQPS--VIELDELGAQGSQLQDVLGQLTGQRTVPNVFIGGKHVGGCTDTFELYQNGELESLLSDANAKS 172          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A2P6VIQ9_9CHLO (OPI10-like protein isoform A n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIQ9_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 4.770e-22
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   76 SSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSS 405
            SS+ G+ V  +  K     V+VY K  CP+C  VK L   L +  +   +ELD    G S Q+AL  + G+RTVP VFIGG HVGGCDDT+AA+ SGKLKELL  AGV+++
Sbjct:    4 SSAGGDLVAQINAKNSENSVMVYSKTYCPYCSEVKSLFNKLGVSAK--VVELDELADGDSLQQALASVCGRRTVPQVFIGGKHVGGCDDTVAAMNSGKLKELLAAAGVQAT 112          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 n=15 Tax=cellular organisms TaxID=131567 RepID=GRXC6_ORYSJ)

HSP 1 Score: 95.1 bits (235), Expect = 6.200e-22
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   94 AVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSN 408
            A+   ++ + S  V+VY K  CPFC RVK L E L    +   IELDG   G+  Q AL + TGQRTVPNVFI G H+GGCDDT+A    GKL  LL +AG  +S+
Sbjct:    2 ALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKA--IELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASS 105          
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A197KDE7_9FUNG (Glutaredoxin n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KDE7_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 6.750e-22
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   73 MSSSSGEAVKA-VQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKA 390
            M+S    +V+  ++  I S  V+++ K  CP+C RVKDL +DLA+  +   +ELD H  G   Q  L  LTGQ +VPNVF+ GTHVGG DDT AA  SG+LKELLDK+
Sbjct:    1 MASQLAASVRTLIKTSIASNPVMIFSKSYCPYCLRVKDLFDDLAVPYKA--LELDEHENGFEIQADLKTLTGQTSVPNVFVKGTHVGGSDDTHAARDSGRLKELLDKS 106          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN42_9STRA9.460e-77100.00Glutaredoxin subgroup I n=1 Tax=Tribonema minus Ta... [more]
A9NP69_PICSI2.890e-2445.04Glutaredoxin domain-containing protein n=2 Tax=Pic... [more]
A0A2P6U4E8_CHLSO3.500e-2447.90Glutaredoxin family isoform 1 n=1 Tax=Chlorella so... [more]
A0A1D2A3R0_AUXPR1.310e-2346.90Glutaredoxin domain-containing protein n=2 Tax=Aux... [more]
A0A0D6R8L1_ARACU4.350e-2348.74Glutaredoxin domain-containing protein n=2 Tax=Ara... [more]
A0A4S8JR44_MUSBA4.680e-2350.48Glutaredoxin domain-containing protein n=2 Tax=Mus... [more]
A0A6A2XY04_HIBSY2.140e-2247.01Glutaredoxin-C5 n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A2P6VIQ9_9CHLO4.770e-2249.55OPI10-like protein isoform A n=2 Tax=Micractinium ... [more]
GRXC6_ORYSJ6.200e-2250.00Glutaredoxin-C6 n=15 Tax=cellular organisms TaxID=... [more]
A0A197KDE7_9FUNG6.750e-2250.00Glutaredoxin n=1 Tax=Linnemannia elongata AG-77 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_115contigContig_115:28421..30033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|9722|CE9721_89
BRITEko00000,ko03110
KEGG koko:K03676
DescriptionGlutaredoxin
COG categoryO
Max annot lvl33090|Viridiplantae
EggNOG OGsCOG0695@1|root,KOG1752@2759|Eukaryota,37V77@33090|Viridiplantae
Evalue7.58e-26
Seed ortholog3075.A0A087SDH3
Hectar predicted targeting categoryother localisation
TranscriptId10044
TrackFilteredModels1
ProteinId9722
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9722gene_11633Tribonema minus UTEX_B_3156 geneContig_115 28421..30033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9722Trimin1|9722|CE9721_89Tribonema minus UTEX_B_3156 polypeptideContig_115 28493..29871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11633_1exon_11633_1Tribonema minus UTEX_B_3156 exonContig_115 28421..28531 +
exon_11633_2exon_11633_2Tribonema minus UTEX_B_3156 exonContig_115 28927..29143 +
exon_11633_3exon_11633_3Tribonema minus UTEX_B_3156 exonContig_115 29777..30033 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11633UTR5_11633Tribonema minus UTEX_B_3156 five_prime_UTRContig_115 28421..28492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11633CDS_11633Tribonema minus UTEX_B_3156 CDSContig_115 28493..28531 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11633UTR3_11633Tribonema minus UTEX_B_3156 three_prime_UTRContig_115 29872..30033 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11633 ID=mRNA_11633|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_115:28421..30033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGTAGCGACTAGGGTGGCCAGAGGCCTGTTTAGCTCTCGCAGAGTGTA
TTGCGTTCCTACGGTCAGAAGTATGAGCTCCAGCAGCGGCGAAGCCGTAA
AAGCTGTTCAGGACAAGATAGACTCGACCAAGGTGCTCGTGTACGAAAAA
TGGGGCTGCCCTTTCTGCGGGCGAGTCAAAGACCTGCTTGAGGACCTAGC
GTTGGAGCCGGAACCAGAATTTATTGAGCTGGATGGCCACGTAGGAGCTA
GCACTCAGAGAGCGCTCATGCAGCTAACAGGGCAGCGGACGGTGCCCAAC
GTGTTCATTGGCGGCACGCATGTTGGCGGCTGCGATGACACAATGGCCGC
GGTGCAGAGTGGCAAGCTGAAGGAGCTGCTGGACAAGGCAGGGGTCCGCA
GCAGCAATCTGTCCAAAATGTAAATAGCACAGTTCTTAATGCCAGAATTA
CGCGCGCGATGGTGTGTGCCAATTCAGTCACTTGCTGTCAATGGTTGCTT
GCTCTCTCCGGCCGCGGCGTGCGTTTAGGCACTCGCTGGTCCTTCATGAG
ACTGAGGTTACCGCAGCTTTGACATTTGTTCAAGC
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protein sequence of jgi.p|Trimin1|9722

>Trimin1|9722|CE9721_89 ID=Trimin1|9722|CE9721_89|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEF
IELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLK
ELLDKAGVRSSNLSKM*
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mRNA from alignment at Contig_115:28421..30033+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11633 ID=mRNA_11633|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1613bp|location=Sequence derived from alignment at Contig_115:28421..30033+ (Tribonema minus UTEX_B_3156 )
GCGGTAGCGACTAGGGTGGCCAGAGGCCTGTTTAGCTCTCGCAGAGTGTA TTGCGTTCCTACGGTCAGAAGTATGAGCTCCAGCAGCGGCGAAGCCGTAA AAGCTGTTCAGGTGCGTCACAGCAAAACCAAGCCCGTTTTTGTGGCCAAG TTCCTTTGTTTGAGAAGGCGGATGTGAGGCAACACACCCGGTACAGTACC TTCAACGGCTCGGTCTGCCGTGTCTGGCCTCACTACGACCAAAATGACCA CCACTCGTGCTAAATCTGACTTTGCTCGTGCTGACACCGCTGCAGTAGTC TTCAACATTCTTGATCGCGCTTGAGAAGAACCCAGATGATTGATGTCAGG CTTGCTGTGAGTCTACATGATGTTGTCTTGACAACTTCAAGAATTTCAAA TTACGCATTGTCACTTCGTGATGTACTCGATCGATGCTGCTTGCGGCTCC TGGGTTACTGAAATGAATCTATCCTTGCTGCACCTCTCTGACATCATCTG CTGCAGGACAAGATAGACTCGACCAAGGTGCTCGTGTACGAAAAATGGGG CTGCCCTTTCTGCGGGCGAGTCAAAGACCTGCTTGAGGACCTAGCGTTGG AGCCGGAACCAGAATTTATTGAGCTGGATGGCCACGTAGGAGCTAGCACT CAGAGAGCGCTCATGCAGCTAACAGGGCAGCGGACGGTGCCCAACGTGTT CATTGGCGGCACGCATGTTGGCGGTGAGAAGCCATTGCGTTTCTGTGTGT TTGGGCTTTCAATGAGCTCGGACTCTCGTTTGTGCACAACTTCCCATCAT GCACACACAAATGGGACTGATCGTTGCCATGTACTGACTACAGTCGACGG AAGCTCTGCTTCTCACAAGCGCAACTGCGATCGTTAAATTTGGCGGCGCT GGGCAACACAGCACCACTTTCCTCACTCCCCTCCTGGTGCTACTCGACGT AGCGTTGAAGAGTTGCATAGCGTCATGTAACAGCGAACTTCAAGGATTTT GCTACGCACTCTGTTAGCCGTGGGTGCACCGCGCTTCTCACAAGCAGTCC GACCACATATACAACATTTGCGGGGTCTTAAACTACGGCAGCACAGAGTG CCAGCACAACTGCCATTGCTTTTGCTAGAGAAGGCGGTAGAGTGGCTTGC CCAGTAGGACGCAAACACCAAGACAGATTGTATATGTGCGCGTTGCTCTT CAGCTGGCAGCTTTGCTGCTGCCGCCCCCGAAACACCACACAATGCCCAT CTGCTTTGTCCCCCCCCCCCCCCCCCTCGCCACCCTTGTGCCGCAATTTT ACTTAAACAGCAATAACGCCTGCCCTTGCCACCCCTTTGGTGCCTCATTT GGGCAGGCTGCGATGACACAATGGCCGCGGTGCAGAGTGGCAAGCTGAAG GAGCTGCTGGACAAGGCAGGGGTCCGCAGCAGCAATCTGTCCAAAATGTA AATAGCACAGTTCTTAATGCCAGAATTACGCGCGCGATGGTGTGTGCCAA TTCAGTCACTTGCTGTCAATGGTTGCTTGCTCTCTCCGGCCGCGGCGTGC GTTTAGGCACTCGCTGGTCCTTCATGAGACTGAGGTTACCGCAGCTTTGA CATTTGTTCAAGC
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Coding sequence (CDS) from alignment at Contig_115:28421..30033+

>mRNA_11633 ID=mRNA_11633|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_115:28421..30033+ (Tribonema minus UTEX_B_3156 )
ATGAGCTCCAGCAGCGGCGAAGCCGTAAAAGCTGTTCAGGACAAGATAGA
CTCGACCAAGGTGCTCGTGTACGAAAAATGGGGCTGCCCTTTCTGCGGGC
GAGTCAAAGACCTGCTTGAGGACCTAGCGTTGGAGCCGGAACCAGAATTT
ATTGAGCTGGATGGCCACGTAGGAGCTAGCACTCAGAGAGCGCTCATGCA
GCTAACAGGGCAGCGGACGGTGCCCAACGTGTTCATTGGCGGCACGCATG
TTGGCGGCTGCGATGACACAATGGCCGCGGTGCAGAGTGGCAAGCTGAAG
GAGCTGCTGGACAAGGCAGGGGTCCGCAGCAGCAATCTGTCCAAAATGTA
A
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