mRNA_11621 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352077
Unique Name	mRNA_11621
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352077 vs. uniprot
Match: A0A835ZD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD09_9STRA)

HSP 1 Score: 432 bits (1112), Expect = 5.190e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 2

Query:   26 MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMCPGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSARRTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAARAGDTTRTTRRADGSHQRQRRQ 688
            MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMCPGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSARRTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAARAGDTTRTTRRADGSHQRQRRQ
Sbjct:    1 MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMCPGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSARRTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAARAGDTTRTTRRADGSHQRQRRQ 221

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352077 vs. uniprot

BLAST of jgi.p|Trimin1|352077 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZD09_9STRA	5.190e-153	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_107	contig	Contig_107:477959..481318 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352077\|estExt_Genemark1.C_Ctg_1070067
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-12_006260.1
TranscriptId	352399
Track	FilteredModels1
ProteinId	352077

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352077	gene_11621	Tribonema minus UTEX_B_3156	gene	Contig_107 477959..481318 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352077	Trimin1\|352077\|estExt_Genemark1.C_Ctg_1070067	Tribonema minus UTEX_B_3156	polypeptide	Contig_107 477965..481293 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11621_5	exon_11621_5	Tribonema minus UTEX_B_3156	exon	Contig_107 477959..478144 -
exon_11621_4	exon_11621_4	Tribonema minus UTEX_B_3156	exon	Contig_107 479751..479796 -
exon_11621_3	exon_11621_3	Tribonema minus UTEX_B_3156	exon	Contig_107 479934..480055 -
exon_11621_2	exon_11621_2	Tribonema minus UTEX_B_3156	exon	Contig_107 480436..480552 -
exon_11621_1	exon_11621_1	Tribonema minus UTEX_B_3156	exon	Contig_107 481093..481318 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_11621	UTR3_11621	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_107 477959..477964 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11621	CDS_11621	Tribonema minus UTEX_B_3156	CDS	Contig_107 481093..481293 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_11621	UTR5_11621	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_107 481294..481318 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_107:477959..481318-
coding sequence from alignment at Contig_107:477959..481318-

spliced messenger RNA

>mRNA_11621 ID=mRNA_11621|Name=jgi.p|Trimin1|352077|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=697bp|location=Sequence derived from alignment at Contig_107:477959..481318- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGCAGCGTGTGACAATTCCGGCGATGGAAGGACAGGAGCCCAAAAAGC
AAGAGCATGTGCAGCAGAAGCATGCACGTCGAGTGCATCTGTCACCCGGA
GCTGCGCCCAGTCCTATGGCGTTGCTGGCGTTGCTACGAGGCTTCGAAAA
CGGCACTTTCACCAGCAGACACCAGGAACGCTTATTGCGGGACACCGAGC
TAGGCCCGCGCTTTGCCAAGCTGCTGCAAAACTGCAGCACGCTCACGGAG
TCCGTCGTCAAGGCGCAGGCCGGCAGCCCCGGCGTGGCGACCAAGTACCT
GATGTGCACCATCGGCACAATGTGCCCCGGCCCCTATCAAGAGTGGCGGT
CGTGCGTCATGGAGGAGGCAGACACCGACTCATGTCGCAGGCACCGCGAG
GACCTGGACAACTGCGGCGCGGACGTCGCGCAGCTCATGATGCGCCAGTG
CCTCAAGGACGACACCAGTGCTCGACGCACGGGGCACGTCACCTGCGCCG
CAGCCAGCTGCCGCGGCGCTGGGGACGCGCGCGGCGACGGCACACACGCG
CGCGCGTACACGCGCCGCATCCTTTCGCGCGCCGGCGCTGAGTCGCGTGT
CAGCTACGGACGCCGCGCCGCGCGCGCTGGCGACACGACGCGCACGACGC
GACGCGCCGACGGCAGCCATCAGCGGCAGCGGCGGCAGTGAGCCCGC

protein sequence of jgi.p|Trimin1|352077

>Trimin1|352077|estExt_Genemark1.C_Ctg_1070067 ID=Trimin1|352077|estExt_Genemark1.C_Ctg_1070067|Name=jgi.p|Trimin1|352077|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MEGQEPKKQEHVQQKHARRVHLSPGAAPSPMALLALLRGFENGTFTSRHQ
ERLLRDTELGPRFAKLLQNCSTLTESVVKAQAGSPGVATKYLMCTIGTMC
PGPYQEWRSCVMEEADTDSCRRHREDLDNCGADVAQLMMRQCLKDDTSAR
RTGHVTCAAASCRGAGDARGDGTHARAYTRRILSRAGAESRVSYGRRAAR
AGDTTRTTRRADGSHQRQRRQ*

mRNA from alignment at Contig_107:477959..481318-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11621 ID=mRNA_11621|Name=jgi.p|Trimin1|352077|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3360bp|location=Sequence derived from alignment at Contig_107:477959..481318- (Tribonema minus UTEX_B_3156 )
GCGGCAGCGTGTGACAATTCCGGCGATGGAAGGACAGGAGCCCAAAAAGC
AAGAGCATGTGCAGCAGAAGCATGCACGTCGAGTGCATCTGTCACCCGGA
GCTGCGCCCAGTCCTATGGCGTTGCTGGCGTTGCTACGAGGCTTCGAAAA
CGGCACTTTCACCAGCAGACACCAGGAACGCTTATTGCGGGACACCGAGC
TAGGCCCGCGCTTTGCCAAGCTGCTGGTGAGCCGACTCGCAAACCTATAG
TCTATGTTGTGTTTGTGCGCTTGTAAGTTTGGAAGCATCTGAAAATCGGT
TTGCTGAAGATGCCAAAGGCACCGCAGAGTGCTCTCGAGCATAAGCCGCC
GCTGTGCTGCTGCTGTATGTGCACGCGCGATGTGACCAGGGAACCTGTCG
TACTGCGAATGCATGGAGTCCACTTCAATGCTGCACCATGTGCAGTACTT
TTCACAATTCGTACCACACATTCCTGGATGAATAAACAAGTCTGCGCTTC
ACACACCACGTACATTGTTCCTCGCCACCTCCTGCGACCCATGTGGCATG
GTGCCACGTGCTGCCCAGGGCTGCCCTGTATGTACAATCTTCGACGAGGC
CCCACACGTCCCTTTTCGCAGCCCACACGGCTGACCATGTTCAGTATACC
TACCACGGTAATGCTGTCGATTGCACTCAGCTGGCATGCCCCTCCTTACA
AGCCATAGCGAGCTTGCTGCTGACGCTCACCATCTGACGCGCGCGGCATC
CGTCTCCACTCCCCAGCAAAACTGCAGCACGCTCACGGAGTCCGTCGTCA
AGGCGCAGGCCGGCAGCCCCGGCGTGGCGACCAAGTACCTGATGTGCACC
ATCGGCACAATGTGCCCCGGCCCCTATCAAGAGGTGAGCCCCCTGCAGCA
TGGCGCTCCGTGCCTAGCGTCGTCTGCTGGTGCCGCAACCCCCGCGCCGC
TGCAGCAGCCCGCACTGTCCTGTCGAACGGGAGCGCTCCTGTGCTCGAAA
AGGGGGGTTGGATTGGCCTCGGGGACTGTCGCACGCATCTCGTTGCGATG
CGCTGCGCGCGCGCGCGCAATATCGTTCCGATGCAAGTGCGAGATTGGTG
CCTGGTGCCGCAATGCGCAGCGACGCACCTTAACGTCACGAATCCGCTGG
CACACAACCTGTCTGTCCTCGCAGCGTCTGAACATACTTCGCCTGACGAC
AGCTGACAGCCCACTTTCGCCCTGCTGCCCCTGCCACCGCCGGTGTCTCG
GCCGCGCGCGCAGTGGCGGTCGTGCGTCATGGAGGAGGCAGACACCGACT
CATGTCGCAGGCACCGCGAGGACCTGGACAACTGCGGCGCGGACGTCGCG
CAGCTCATGATGCGCCAGTGCCTCAAGGACGACACGTACTGATATATACC
TACTTACTCGGGTTGAGCACTGATGCGGACGCAGCAGCAGCGCGCGACGC
ATGGGGCACGTCACCCGTGCAGCCGCGTTGCTGCTCGATGCGGCCCGCTG
AGCGCTGATGCGGATGCAGCAGCAGTGCTCGACGCACGGGGCACGTCACC
TGCGCCGCAGCCAGCTGCGTAGGCGCTGTTGCTGCTCGATGCGGCTCGCT
GAGCGCTGATGCGGATGCAGCAGCAGTGCTCGACGCACGAGGCGCGTCGC
CCGCGCAGCCAGGCAGGCGCGCTGCTGCTCAATGCAGTTCGCTGTGCTGC
CAAGTGCCGCAGGTCGTGCACTTGAAGTACACCCAAGTAGAAACAGCAGA
CGTCAACCGCGACCGATGGTGCCATGTACTTGCCATGTGCATATGCTGGA
ATGGCACGTCAGTATATGCGGGAGTACGCTTGCCCGTCACAATCATGACC
GCCGGCTGCACCAGCTGCTGCACCGCAATGCGGGCACAAAACCCAGCATG
CGCTGCTAGACGACCTGAAGCTCTGTCATCTGCTGCAGTCTCTTCGTAAT
AGACGAGGCACAAACAAGCACCACACCCTTCTCCTTGGTGGCTTCAATCT
TTGTTCAGCATGTGTTGTGGACTGGCATATGCTGCAACGTCCACACATCA
ACATCAACATGCGATGCCCGTAGCAGCAGAGTCACACGTGGAAGGGACAC
GCCTGGCATCTTGCGGCAGGGCATGCATCTGACATTGTGCTTGGCTTGCT
TGACATGTCACATGCTCAACCTCATGAATGACCATACGCACGTGTGGGCA
AATGTGCACATCATGGCCATGCAACAGAGGTCTACCTCAACGCACCCCCA
CCCTTCATGCGCGCTGCGGCACGGGGCAGCATTGCACGGCTTGGACAGAG
CTGAATATACCACCACGTAACATGTCAACCCTGGTGTGAACCATGCGGAC
TTAAGGTAACTATGCGCCTAGTCGTACAGGTACCGAGATGCGTTGTATCG
ACAACACCTGGGCCCACATAACTGCAGCTGGTCATGTGCACATCTTTCGG
TGATGAGCTGAGGCTGCTCAGCATACCATACCTGACACTAACACAAGAAA
GACCAAACATTCCCGTTGTTGATAGTGCGTGTGGGCGTTGTTGCACTGAA
GTGGCCAATGAGGGCCATTCCCCCCATGACAAGAATATACTGAGAGCTGA
GAGAGCGTGGTCCTCATTCGCCATGTTAGTTGAGCTGTGCTTACCAGGCA
ATAATACAGTGCGCAAGGCATGTATTCGCCTGCACATCAGCACATACCCA
CATCCAACAATTTGACCACAATCTCGTCCTCATGAGGCCATTGCGAATGA
AAGCACAGTGAAGCCCCTGGCAGACCTCCAGCAGAAACTTGATTTCAGCA
GCAATTGCGCAGCACTCAAACCCGGCCAATTGTATTACAAAAACACACAG
AGCACTGACTCCAGGATGCGCAGCAAGACGAGGCGCCCGTGATTGAGAGT
GCCGTGGCACCTGGGCGTGGCTGGACCGCCCCGCATGCTCGCCCGTCGCA
CAATATTCCAGAAATTCCAGGGCGCTTGCTTCCACACTGACACACTGTCA
GGGACCGCTCTCACGACCCTGGCCCGCTTTCATTTTCTCCTTGACAGCGC
CTCACCAAAACGCATGGGGGTCGAACTCTTTTGCGCTCTGAAGGGTTTGT
CGTTGCAGTCCCCGCCCACAAGTCCGATGTTCTTTCTTACATGGCGTCGC
TTTTCGGTGTGCGGTATCTATCAGCGCGGCGCTGGGGACGCGCGCGGCGA
CGGCACACACGCGCGCGCGTACACGCGCCGCATCCTTTCGCGCGCCGGCG
CTGAGTCGCGTGTCAGCTACGGACGCCGCGCCGCGCGCGCTGGCGACACG
ACGCGCACGACGCGACGCGCCGACGGCAGCCATCAGCGGCAGCGGCGGCA
GTGAGCCCGC

Coding sequence (CDS) from alignment at Contig_107:477959..481318-

>mRNA_11621 ID=mRNA_11621|Name=jgi.p|Trimin1|352077|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_107:477959..481318- (Tribonema minus UTEX_B_3156 )
ATGGAAGGACAGGAGCCCAAAAAGCAAGAGCATGTGCAGCAGAAGCATGC
ACGTCGAGTGCATCTGTCACCCGGAGCTGCGCCCAGTCCTATGGCGTTGC
TGGCGTTGCTACGAGGCTTCGAAAACGGCACTTTCACCAGCAGACACCAG
GAACGCTTATTGCGGGACACCGAGCTAGGCCCGCGCTTTGCCAAGCTGCT
GCAAAACTGCAGCACGCTCACGGAGTCCGTCGTCAAGGCGCAGGCCGGCA
GCCCCGGCGTGGCGACCAAGTACCTGATGTGCACCATCGGCACAATGTGC
CCCGGCCCCTATCAAGAGTGGCGGTCGTGCGTCATGGAGGAGGCAGACAC
CGACTCATGTCGCAGGCACCGCGAGGACCTGGACAACTGCGGCGCGGACG
TCGCGCAGCTCATGATGCGCCAGTGCCTCAAGGACGACACCAGTGCTCGA
CGCACGGGGCACGTCACCTGCGCCGCAGCCAGCTGCCGCGGCGCTGGGGA
CGCGCGCGGCGACGGCACACACGCGCGCGCGTACACGCGCCGCATCCTTT
CGCGCGCCGGCGCTGAGTCGCGTGTCAGCTACGGACGCCGCGCCGCGCGC
GCTGGCGACACGACGCGCACGACGCGACGCGCCGACGGCAGCCATCAGCG
GCAGCGGCGGCAGTGA