mRNA_11620 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352076
Unique Name	mRNA_11620
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352076 vs. uniprot
Match: A0A835ZFW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW7_9STRA)

HSP 1 Score: 661 bits (1706), Expect = 1.570e-238
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1

Query:    1 MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS 1128
            MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS
Sbjct:    1 MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS 376

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352076 vs. uniprot

BLAST of jgi.p|Trimin1|352076 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZFW7_9STRA	1.570e-238	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_107	contig	Contig_107:474196..477902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352076\|estExt_Genemark1.C_Ctg_1070066
Hectar predicted targeting category	other localisation
Ec32 ortholog description	C2 domain
Ec32 ortholog	Ec-12_006220.1
TranscriptId	352398
Track	FilteredModels1
ProteinId	352076

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352076	gene_11620	Tribonema minus UTEX_B_3156	gene	Contig_107 474196..477902 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352076	Trimin1\|352076\|estExt_Genemark1.C_Ctg_1070066	Tribonema minus UTEX_B_3156	polypeptide	Contig_107 474196..477902 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11620_1	exon_11620_1	Tribonema minus UTEX_B_3156	exon	Contig_107 474196..474476 +
exon_11620_2	exon_11620_2	Tribonema minus UTEX_B_3156	exon	Contig_107 474639..474702 +
exon_11620_3	exon_11620_3	Tribonema minus UTEX_B_3156	exon	Contig_107 475077..475151 +
exon_11620_4	exon_11620_4	Tribonema minus UTEX_B_3156	exon	Contig_107 475551..475855 +
exon_11620_5	exon_11620_5	Tribonema minus UTEX_B_3156	exon	Contig_107 476337..476556 +
exon_11620_6	exon_11620_6	Tribonema minus UTEX_B_3156	exon	Contig_107 477059..477118 +
exon_11620_7	exon_11620_7	Tribonema minus UTEX_B_3156	exon	Contig_107 477777..477902 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11620	CDS_11620	Tribonema minus UTEX_B_3156	CDS	Contig_107 474196..474476 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_107:474196..477902+
coding sequence from alignment at Contig_107:474196..477902+

spliced messenger RNA

>mRNA_11620 ID=mRNA_11620|Name=jgi.p|Trimin1|352076|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_107:474196..477902+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGGACCACCGATGACATCCGGGTAGCGGCTCAGATGGCCAACAA
CGGTGCTGGCGGCGCCCCTGGTGCGCCCACCATAGCCACTTCGTTCCTGA
CCCTGCCGCAAGTCACTCCATCTAGGAGGCGCGGCTCGCTGCCCACGGAG
GGATGGGGGGAGCCTTTTGAGATCCCTCTGCGCGATGAAGACAGCGGCCA
CTGCCAGATAACCCTGGAGGCCATCAGAATGGTGAAGGGCGAGAACGGCA
CTGTGACGCCACAGCATTTCGCCAAAACGAACATCTCGCTGACTCCCGAC
CTCAGGCAGATGAAGGCGGACATGTTTGGCAAGGTCAACAACAAGGGGGC
GCCTAAGAAGCTGGTCACGCTGTCGCTGACCCTGGAGTTGTTCAAGGGCC
AGGCCGCCGCGAAAAACAGGTCGCCGCGCGCGGGCCGCGGCAAGCTCTTC
GGCGCGCTGGAGGGCGCCCTGGAGCTGGATGAGGACGGACACCCCGTGGG
CTCAGGCGGCGCGCCTACGAGCCCGCCCACGCCGGCGCTGCGCCCCGAGA
GCCCCGTCTTTTCGGGGGGGGAGGTGCCTCTTTCGTCGAGGGGCGCGGTG
GCGGCGGCGGCGGCAGCGGCGGCGGCGGCGACGGCGACGGCGCACAGGGC
GGCGCCTGCGCGCAGGGCGGTGCCCGCCAAGAAGCTGCTGCTGACGACGC
TGTGCCTGGCGCTGGGGGGGCTGTGCACCATCCTCAGCTACGGCGGCGGC
AAGGCTGCTGCCCCCCCCCCCCCCGGGCCCGAGCCGATCAAGCTGAGCCC
TGGCGCAGTGATGCGGCCTGGCGACAGAGTGGCGTCCGCGTCCCACTTCC
TGGAGCTGCGCGGCGACGGTAACCTGGTAGTGGGCGTCAACGCCGTGGCG
GCGGGCGCCGGCGACGCGCAGAGCGGAGCCGCTGCGGCGCCCCTGGTGTG
GGAGTCGCGCACGGCATGCGGCAAGTGCGAGGCGCGCGTGACCAAGTCGG
GAGAAATCGTGCTGCTGCGCCACAGGTTCTTCGCCGTGGGGCGCTACAGG
CTCGGACAGCACCCCCTGCCCGACGTCCTGCGCTTCGTGCGCGACCCCCA
GCCCAAGTCCATGACCATCGCTTCGTCATAG

protein sequence of jgi.p|Trimin1|352076

>Trimin1|352076|estExt_Genemark1.C_Ctg_1070066 ID=Trimin1|352076|estExt_Genemark1.C_Ctg_1070066|Name=jgi.p|Trimin1|352076|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=377bp
MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTE
GWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPD
LRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLF
GALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAV
AAAAAAAAAATATAHRAAPARRAVPAKKLLLTTLCLALGGLCTILSYGGG
KAAAPPPPGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVA
AGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYR
LGQHPLPDVLRFVRDPQPKSMTIASS*

mRNA from alignment at Contig_107:474196..477902+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11620 ID=mRNA_11620|Name=jgi.p|Trimin1|352076|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3707bp|location=Sequence derived from alignment at Contig_107:474196..477902+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGGACCACCGATGACATCCGGGTAGCGGCTCAGATGGCCAACAA
CGGTGCTGGCGGCGCCCCTGGTGCGCCCACCATAGCCACTTCGTTCCTGA
CCCTGCCGCAAGTCACTCCATCTAGGAGGCGCGGCTCGCTGCCCACGGAG
GGATGGGGGGAGCCTTTTGAGATCCCTCTGCGCGATGAAGACAGCGGCCA
CTGCCAGATAACCCTGGAGGCCATCAGAATGGTGAAGGGCGAGAACGGCA
CTGTGACGCCACAGCATTTCGCCAAAACGAAGTGAGTGAGTGCTCGCTTC
ATGCGCAGTACTATGCACGCGTACGCCCTCGCGCTTGCCATCGCCTCGTC
GACTGACTGCGCACCACCACAACTCGCTGGCCAAGAACGCCTGACGCACT
CTGATTTGGTACGTTTGCACTCGGTGTCCTGCGTACGTGCCAGCATCTCG
CTGACTCCCGACCTCAGGCAGATGAAGGCGGACATGTTTGGCAAGGTCAA
CAACAAGGTGCGTGTGCTGCACTTCATATGCCTCTGCAACGTGCTCAGCG
TAAGTATACCAGCAGGCTCAAATGTCGTTTTTTCCGCTCCAAGGGTCTCG
CTTTTCTGATTGAGGTGTAAGCGGCCATGTGCAGTCAGTGTCTGCCTGCA
AATGCGACTGTGGCAATCGATTCCTGTGGGAATAGTTGTGCAATGCGCAC
CTGTGGCAATCGACGTGATGTGAGCAAATCCTCTCAGGCTCCACGTTATG
GTCATTTCTATGCCATTCACACAAGCCAATGCTTGTCAAATGCCGTTCTG
AAACAGAAGTCAGCACCACAACAAAGTTGGTGATGATAACACTGGTCTGA
AAACTGTGCATGTTTGCTCTCCTTGCGCCAGGGGGCGCCTAAGAAGCTGG
TCACGCTGTCGCTGACCCTGGAGTTGTTCAAGGGCCAGGCCGCCGCGAAA
AACAGGGTAAGTCAGTGGTCCATACCGCTCAACACGTCTAGCCATCCGAA
GGCGATGCCCACCAGTACACGCGTCCATGACGATATCAGTGATGCCACAG
GGCAGCACATGCGAAGGCTATGTGCTGAGAGCATCGGTGTCCTTCCGGAT
GTGGTGTTTCTGCCCATCATGCAACTCGGCATACTACATGATTGACTTGA
CCAATGAACGTCCATGCGCGCTCTGATGAACTCAGGAGACTGACTGAAGG
AGCGCTGCTCTGCGTGCGGGACATCTAGCGAAACCACACAATCGGACGCT
ATCACCTGCGCTAACAACACCTGCTCTCCCGGTGCCATGCTCAGTGCTCA
TACCCACCGCCGCCCGCGCTTCTCCGTCCAACGCCGTACCACGCTCCCTC
CGCAGTCGCCGCGCGCGGGCCGCGGCAAGCTCTTCGGCGCGCTGGAGGGC
GCCCTGGAGCTGGATGAGGACGGACACCCCGTGGGCTCAGGCGGCGCGCC
TACGAGCCCGCCCACGCCGGCGCTGCGCCCCGAGAGCCCCGTCTTTTCGG
GGGGGGAGGTGCCTCTTTCGTCGAGGGGCGCGGTGGCGGCGGCGGCGGCA
GCGGCGGCGGCGGCGACGGCGACGGCGCACAGGGCGGCGCCTGCGCGCAG
GGCGGTGCCCGCCAAGAAGCTGCTGCTGACGACGCTGTGCCTGGCGCTGG
GGGGGCTGTGGTGAGTGGGTGGGGGCGCCACGCTGCAGAGGGGGGGAGGG
CGGGGGCGTCACGCCCGCGCGGGCTGGGGTGGCCGTTGTTGGCAAGCGCG
TCTTTGTGACGCGCGCGCAGTCGTGGGAGCGTGCTGTGCCCATCAATGCC
GCAAAGCACCAGTTGCAGGCCCGCCACGCGCGCGCCGCAGCCATGTGATA
TGGCGCTCAGCGCTGAGGGCAGGGCGTGCATAGAAACAATCAACAGCTCG
TGCCGCCACAGCCTGTGGACGCACTCACTGATCCACTGAGATGGGCCAAA
AGGCGACCCCGATGAGGTCGGCAATCCAGCATTCTGCTCCGCCAGGACGG
ACGCTAGCATTCTACGAACCGATGCTGCCAGCAGCAACGCTGCTCCGCAC
CTCATCCATCGCCCATTGCCCTGCAACCGATCGCGTTGCTCAAAGCGACG
TGCCCCCCCCCCCCCCCCCCCCCTTGCCGCATGCGCCGCAGCACCATCCT
CAGCTACGGCGGCGGCAAGGCTGCTGCCCCCCCCCCCCCCGGGCCCGAGC
CGATCAAGCTGAGCCCTGGCGCAGTGATGCGGCCTGGCGACAGAGTGGCG
TCCGCGTCCCACTTCCTGGAGCTGCGCGGCGACGGTAACCTGGTAGTGGG
CGTCAACGCCGTGGCGGCGGGCGCCGGCGACGCGCAGAGCGGAGCCGCTG
CGGCGCCCCTGGTGAGTGGTAATGAGTGGCCGGTGAGAGCAGCGGCGCCG
CAGCGGCTGTCACTGCACGGCGGGCGTCGCGGCGGGGTGCGAGGCGGCGA
GCGGCGCTGCGCGGCGTGCTTGGCTGGATGTGTTACGAGATGACATGCGG
TTGCGCCATACAATACTTCGAAGTATGTGTATTCCGCCTCAGTTCAACTG
TCGTGGTTTGCTGCGCAAAAGCGTACTTCTGAAGACGAGAGGTTCTGGCG
CTGCCTCTTCCTGCACGCAGCGCAAAAGCTCACGCCTGGCTCTCCTGGTT
CAGCTCCACGGCAACGCAGGCGTGGATTCCCGCACCACAAGTTCAAGCAA
TAAGTTCAAGTACCACATCTATTACTCCACACCCGCACACCCCTGAACGC
CCCGCTTTGATGAACTGCTCCCGCTTTGATGAATTGCACTTCTCTCAAGT
CGCCTGCACTTGCTGCAGCAGTTCACACTAGGCTGCTCCCTGTCTGCTGC
CGCGCGCGCGCAGGTGTGGGAGTCGCGCACGGCATGCGGCAAGTGCGAGG
CGCGCGTGACCAAGTCGGGAGAAGTGAGTTCCATTCACAGTACGCAGCAG
TGCTCATCAGCGCCGTGCACCGCCAATTGCTGCTTGCCGCATTGTGGCGC
AAGGCGTGCTCTCCGCATACAGAGTTAGGGTTACTAGTAGGGTGAGGGTT
AGGGTCAGGTCAGCAGCCGGTGGTGCTGTACCGGATGGCCCGGCTAGACA
CAGGCCAGCTTGCTCTTGCCTGGCATTGCTGTCAGAATGCTGAGCTGCTG
CTGTTGCTGGTCGCAGATGACGCCCAGCGGCCAGCGCAAGTGACCTCATC
ATGCCATGCGTGCACGCTAGCAGGCGTGGTTGTGAACGCGCGCAATGGCA
GTGTGTCGCTGACCGGAGTGCGGGTCCGCGCGTGACAAGTTCAAGTTCAT
AGGACATGGTGGTAGTTGTGACCACGCATGTTGCTGATGTCATCTTAATT
GACGGTGACGCGTACGCACACATCTGCATGATCTCGTACCGCAACATGTC
AATGAGTACCATACAGTATAGTGCTCACTGATCAAGTATGGTCCATACTT
GATGAGATTTGCAGCCATCGCGGTACGCTGCGCTGACGTGAGAAGCGGGA
GGCGTGAATCTTGCCCCCACCCAACCGATCACCGTCGCTGACCACGAGCT
GCCGCCTCTCGTGCGCGCGCTCTCCGCGCAGATCGTGCTGCTGCGCCACA
GGTTCTTCGCCGTGGGGCGCTACAGGCTCGGACAGCACCCCCTGCCCGAC
GTCCTGCGCTTCGTGCGCGACCCCCAGCCCAAGTCCATGACCATCGCTTC
GTCATAG

Coding sequence (CDS) from alignment at Contig_107:474196..477902+

>mRNA_11620 ID=mRNA_11620|Name=jgi.p|Trimin1|352076|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1131bp|location=Sequence derived from alignment at Contig_107:474196..477902+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGGACCACCGATGACATCCGGGTAGCGGCTCAGATGGCCAACAA
CGGTGCTGGCGGCGCCCCTGGTGCGCCCACCATAGCCACTTCGTTCCTGA
CCCTGCCGCAAGTCACTCCATCTAGGAGGCGCGGCTCGCTGCCCACGGAG
GGATGGGGGGAGCCTTTTGAGATCCCTCTGCGCGATGAAGACAGCGGCCA
CTGCCAGATAACCCTGGAGGCCATCAGAATGGTGAAGGGCGAGAACGGCA
CTGTGACGCCACAGCATTTCGCCAAAACGAACATCTCGCTGACTCCCGAC
CTCAGGCAGATGAAGGCGGACATGTTTGGCAAGGTCAACAACAAGGGGGC
GCCTAAGAAGCTGGTCACGCTGTCGCTGACCCTGGAGTTGTTCAAGGGCC
AGGCCGCCGCGAAAAACAGGTCGCCGCGCGCGGGCCGCGGCAAGCTCTTC
GGCGCGCTGGAGGGCGCCCTGGAGCTGGATGAGGACGGACACCCCGTGGG
CTCAGGCGGCGCGCCTACGAGCCCGCCCACGCCGGCGCTGCGCCCCGAGA
GCCCCGTCTTTTCGGGGGGGGAGGTGCCTCTTTCGTCGAGGGGCGCGGTG
GCGGCGGCGGCGGCAGCGGCGGCGGCGGCGACGGCGACGGCGCACAGGGC
GGCGCCTGCGCGCAGGGCGGTGCCCGCCAAGAAGCTGCTGCTGACGACGC
TGTGCCTGGCGCTGGGGGGGCTGTGCACCATCCTCAGCTACGGCGGCGGC
AAGGCTGCTGCCCCCCCCCCCCCCGGGCCCGAGCCGATCAAGCTGAGCCC
TGGCGCAGTGATGCGGCCTGGCGACAGAGTGGCGTCCGCGTCCCACTTCC
TGGAGCTGCGCGGCGACGGTAACCTGGTAGTGGGCGTCAACGCCGTGGCG
GCGGGCGCCGGCGACGCGCAGAGCGGAGCCGCTGCGGCGCCCCTGGTGTG
GGAGTCGCGCACGGCATGCGGCAAGTGCGAGGCGCGCGTGACCAAGTCGG
GAGAAATCGTGCTGCTGCGCCACAGGTTCTTCGCCGTGGGGCGCTACAGG
CTCGGACAGCACCCCCTGCCCGACGTCCTGCGCTTCGTGCGCGACCCCCA
GCCCAAGTCCATGACCATCGCTTCGTCATAG