mRNA_11607 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352067
Unique NamemRNA_11607
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352067 vs. uniprot
Match: A0A835ZP46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP46_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.760e-73
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 
Query:    1 MALTAVRARAATVAALRALRHPAMAVPARGVMDGFGNLNEREKGEELVHMRREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAKKPLYKSGEREGARQYVLSGKESRAA 366
            MALTAVRARAATVAALRALRHPAMAVPARGVMDGFGNLNEREKGEELVHMRREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAKKPLYKSGEREGARQYVLSGKESRAA
Sbjct:    1 MALTAVRARAATVAALRALRHPAMAVPARGVMDGFGNLNEREKGEELVHMRREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAKKPLYKSGEREGARQYVLSGKESRAA 122
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BLAST of jgi.p|Trimin1|352067 vs. uniprot
Match: A0A835YNK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.730e-18
Identity = 46/80 (57.50%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:   52 ALRHPAMAVPARGVMDGFGNLNEREKGEELVHMRREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAK 291
            ALR PA+A+  R  M+G+ + NEREKGEELVH+R++EK LL+KLR+N + +  ELKE+LGP+  +LP DV+EKL++WK K
Sbjct:   17 ALRTPAIAISTRA-MNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPH--QLPDDVLEKLIEWKFK 93
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352067 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZP46_9STRA1.760e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNK7_9STRA1.730e-1857.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:383794..384739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352067|estExt_Genemark1.C_Ctg_1070053
Hectar predicted targeting categorymitochondrion
TranscriptId352389
TrackFilteredModels1
ProteinId352067
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352067gene_11607Tribonema minus UTEX_B_3156 geneContig_107 383794..384739 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11607_1exon_11607_1Tribonema minus UTEX_B_3156 exonContig_107 383794..384086 +
exon_11607_2exon_11607_2Tribonema minus UTEX_B_3156 exonContig_107 384224..384263 +
exon_11607_3exon_11607_3Tribonema minus UTEX_B_3156 exonContig_107 384543..384739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11607CDS_11607Tribonema minus UTEX_B_3156 CDSContig_107 383794..384086 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11607UTR3_11607Tribonema minus UTEX_B_3156 three_prime_UTRContig_107 384579..384739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352067Trimin1|352067|estExt_Genemark1.C_Ctg_1070053Tribonema minus UTEX_B_3156 polypeptideContig_107 383794..384578 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11607 ID=mRNA_11607|Name=jgi.p|Trimin1|352067|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=530bp|location=Sequence derived from alignment at Contig_107:383794..384739+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCACGGCGGTCCGCGCGCGCGCCGCGACGGTGGCGGCCCTGCG
CGCCCTGCGCCACCCCGCAATGGCCGTGCCCGCGCGCGGCGTCATGGACG
GCTTTGGCAACCTCAATGAGCGCGAGAAGGGCGAGGAGCTCGTGCACATG
CGGCGCGAGGAGAAGCTGCTGCTCATGAAGCTGCGCGAGAACCTACGCAC
GTCGCGCACGGAGCTCAAGGAGATCCTCGGCCCGTACGCCGCCAAGCTCC
CCGGCGACGTCGTGGAGAAGCTGCTGGACTGGAAAGCCAAGAAGCCGCTC
TACAAGAGCGGCGAGAGGGAAGGAGCAAGGCAGTACGTGTTGTCTGGCAA
GGAAAGTCGTGCTGCGTGAGCGTACAGGCGGGCTTACAGAGTCTGGCGCG
GAGCGCGCGCCCGCTTGGCGGCTGTAAAGTAGACGTGCATGGCGCGCACG
GCCGCAGGCGGGGCGCGGCGCGCCGCAGTGCCAATGGCACGGTGTACATA
CACATGTGAGGTCGCTGGGAAGGCGCTGAA
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protein sequence of jgi.p|Trimin1|352067

>Trimin1|352067|estExt_Genemark1.C_Ctg_1070053 ID=Trimin1|352067|estExt_Genemark1.C_Ctg_1070053|Name=jgi.p|Trimin1|352067|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
MALTAVRARAATVAALRALRHPAMAVPARGVMDGFGNLNEREKGEELVHM
RREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAKKPL
YKSGEREGARQYVLSGKESRAA*
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mRNA from alignment at Contig_107:383794..384739+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11607 ID=mRNA_11607|Name=jgi.p|Trimin1|352067|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=946bp|location=Sequence derived from alignment at Contig_107:383794..384739+ (Tribonema minus UTEX_B_3156 )
ATGGCGCTCACGGCGGTCCGCGCGCGCGCCGCGACGGTGGCGGCCCTGCG
CGCCCTGCGCCACCCCGCAATGGCCGTGCCCGCGCGCGGCGTCATGGACG
GCTTTGGCAACCTCAATGAGCGCGAGAAGGGCGAGGAGCTCGTGCACATG
CGGCGCGAGGAGAAGCTGCTGCTCATGAAGCTGCGCGAGAACCTACGCAC
GTCGCGCACGGAGCTCAAGGAGATCCTCGGCCCGTACGCCGCCAAGCTCC
CCGGCGACGTCGTGGAGAAGCTGCTGGACTGGAAAGCCAAGAAGTGAAGT
GAAGCGCCGCAGTGGCGCTTGAAGGGGGGGAGAAGGGGGGGGGGGGGGGG
GGGTAACGGTGGTGGTATTGATAGGCGGGTGCGCGGGGCATAGAATACAT
GGATGGTGATTGGCATCACTGCCGTTGCAGGCCGCTCTACAAGAGCGGCG
AGAGGGAAGGAGCAAGGCAGGTGGATATGGTAGGGGCATACATACAGTTG
GAGAGGGGCAGGGGGGCGGGGGGCGGCCGCAGGCTTCAAAGGTTTTCCGG
CCGCGATGCATGCGGTCGGCGACGCACCGCCGGGTAGACTACAAGGGGGG
GGGGGGGGGGGGCAAAGAGCTCAAGGACAAAGAAAGAGGGGGCAGGAGGG
GGTGCATTTAGATGGCGGCGCAGTCTGGTAAAATGGCTCCATCTCCTTGT
AAGCGTCGGCGCGGGCGGGCGACCGACGCGCGCGTTTGCCCGCCCGCAGT
ACGTGTTGTCTGGCAAGGAAAGTCGTGCTGCGTGAGCGTACAGGCGGGCT
TACAGAGTCTGGCGCGGAGCGCGCGCCCGCTTGGCGGCTGTAAAGTAGAC
GTGCATGGCGCGCACGGCCGCAGGCGGGGCGCGGCGCGCCGCAGTGCCAA
TGGCACGGTGTACATACACATGTGAGGTCGCTGGGAAGGCGCTGAA
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Coding sequence (CDS) from alignment at Contig_107:383794..384739+

>mRNA_11607 ID=mRNA_11607|Name=jgi.p|Trimin1|352067|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_107:383794..384739+ (Tribonema minus UTEX_B_3156 )
ATGGCGCTCACGGCGGTCCGCGCGCGCGCCGCGACGGTGGCGGCCCTGCG
CGCCCTGCGCCACCCCGCAATGGCCGTGCCCGCGCGCGGCGTCATGGACG
GCTTTGGCAACCTCAATGAGCGCGAGAAGGGCGAGGAGCTCGTGCACATG
CGGCGCGAGGAGAAGCTGCTGCTCATGAAGCTGCGCGAGAACCTACGCAC
GTCGCGCACGGAGCTCAAGGAGATCCTCGGCCCGTACGCCGCCAAGCTCC
CCGGCGACGTCGTGGAGAAGCTGCTGGACTGGAAAGCCAAGAAGCCGCTC
TACAAGAGCGGCGAGAGGGAAGGAGCAAGGCAGTACGTGTTGTCTGGCAA
GGAAAGTCGTGCTGCGTGA
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