mRNA_11603 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352065
Unique NamemRNA_11603
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352065 vs. uniprot
Match: A0A835ZH70_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH70_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.310e-94
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  224 MQRCSTLCRHAQRCTVAAAAASTLPALYSLNYQTDDLDQNQSRHIFTVACKSVFFRLPGSGCAQCNENGAGLRHAFERPMCLCGSPCAAALRHSITKCVLASPVHIVCSSLCVVLVLASRRCCQRFRRGACAGTRAP 634
            MQRCSTLCRHAQRCTVAAAAASTLPALYSLNYQTDDLDQNQSRHIFTVACKSVFFRLPGSGCAQCNENGAGLRHAFERPMCLCGSPCAAALRHSITKCVLASPVHIVCSSLCVVLVLASRRCCQRFRRGACAGTRAP
Sbjct:    1 MQRCSTLCRHAQRCTVAAAAASTLPALYSLNYQTDDLDQNQSRHIFTVACKSVFFRLPGSGCAQCNENGAGLRHAFERPMCLCGSPCAAALRHSITKCVLASPVHIVCSSLCVVLVLASRRCCQRFRRGACAGTRAP 137
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BLAST of jgi.p|Trimin1|352065 vs. uniprot
Match: A0A835ZEB9_9STRA (Uracil phosphoribosyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.630e-28
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 3 
Query:    3 AVDPDVGAHGHVVPGIGGLYHRYTESMEEMKHDSPAGKHVATPSQQPRKRILGLF 167
            AVDPDVGAHGHVVPGIGGLYHRYTESMEEMKHDSPAGKHVATPSQQPRKRILGLF
Sbjct:  449 AVDPDVGAHGHVVPGIGGLYHRYTESMEEMKHDSPAGKHVATPSQQPRKRILGLF 503
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352065 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZH70_9STRA1.310e-94100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZEB9_9STRA7.630e-28100.00Uracil phosphoribosyltransferase-domain-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:365315..366824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352065|estExt_Genemark1.C_Ctg_1070050
Hectar predicted targeting categoryother localisation
TranscriptId352387
TrackFilteredModels1
ProteinId352065
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352065gene_11603Tribonema minus UTEX_B_3156 geneContig_107 365315..366824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11603_2exon_11603_2Tribonema minus UTEX_B_3156 exonContig_107 365315..365776 -
exon_11603_1exon_11603_1Tribonema minus UTEX_B_3156 exonContig_107 366651..366824 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11603UTR3_11603Tribonema minus UTEX_B_3156 three_prime_UTRContig_107 365315..365316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11603CDS_11603Tribonema minus UTEX_B_3156 CDSContig_107 365317..365727 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11603UTR5_11603Tribonema minus UTEX_B_3156 five_prime_UTRContig_107 366651..366824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352065Trimin1|352065|estExt_Genemark1.C_Ctg_1070050Tribonema minus UTEX_B_3156 polypeptideContig_107 365317..365727 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11603 ID=mRNA_11603|Name=jgi.p|Trimin1|352065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_107:365315..366824- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCCGTGGACCCGGACGTCGGCGCGCACGGCCACGTCGTCCCCGGCATC
GGCGGCCTGTACCACCGCTACACGGAGAGCATGGAGGAGATGAAGCACGA
CTCGCCCGCGGGCAAGCACGTAGCGACGCCCTCGCAGCAGCCGCGCAAGC
GCATACTGGGCCTCTTCTAGCCCGGCCTTCGACGCTGCCGCGCCGTGGCA
ACGCAGATGGCGGCGGCGCGCAAATGCAGCGCTGCTCAACGCTGTGCCGC
CATGCTCAACGCTGTACGGTGGCTGCAGCAGCAGCGAGCACATTGCCTGC
CCTATATTCGCTGAACTACCAAACGGATGATTTAGATCAAAATCAGAGCC
GCCACATTTTTACCGTAGCTTGTAAGAGCGTCTTCTTCAGGCTGCCGGGC
TCAGGATGCGCACAATGCAACGAGAACGGCGCAGGGTTGAGGCACGCGTT
CGAGCGCCCCATGTGCCTATGCGGGTCGCCCTGTGCAGCTGCGCTGCGCC
ACTCGATCACAAAATGTGTACTCGCTTCCCCTGTCCACATCGTCTGTAGC
TCGTTGTGCGTGGTGCTTGTCTTGGCAAGCCGTAGGTGCTGTCAACGCTT
TCGCCGAGGTGCATGTGCTGGTACCCGAGCCCCCTG
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protein sequence of jgi.p|Trimin1|352065

>Trimin1|352065|estExt_Genemark1.C_Ctg_1070050 ID=Trimin1|352065|estExt_Genemark1.C_Ctg_1070050|Name=jgi.p|Trimin1|352065|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MQRCSTLCRHAQRCTVAAAAASTLPALYSLNYQTDDLDQNQSRHIFTVAC
KSVFFRLPGSGCAQCNENGAGLRHAFERPMCLCGSPCAAALRHSITKCVL
ASPVHIVCSSLCVVLVLASRRCCQRFRRGACAGTRAP
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mRNA from alignment at Contig_107:365315..366824-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11603 ID=mRNA_11603|Name=jgi.p|Trimin1|352065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1510bp|location=Sequence derived from alignment at Contig_107:365315..366824- (Tribonema minus UTEX_B_3156 )
CGGCCGTGGACCCGGACGTCGGCGCGCACGGCCACGTCGTCCCCGGCATC
GGCGGCCTGTACCACCGCTACACGGAGAGCATGGAGGAGATGAAGCACGA
CTCGCCCGCGGGCAAGCACGTAGCGACGCCCTCGCAGCAGCCGCGCAAGC
GCATACTGGGCCTCTTCTAGCCCGGTGCGTTGTGGCACGTTGAGCTGCGT
GCTGTTGGGAAACCTGCGCATGCGTAGCCTCATCTAGCGCAGGTCCTGCA
TGCTCAGCCTCTGCTAGCGCGGTGCGTCGCGCGGCAAACTCTGCCGTTGG
GCACACACGCGCAAGGCAGGGGCTGCCGCACATGATGACTCCGGCAGCGG
CGGCGGGGCGATGCACTCTGAGCAGCGAGCCGGCGCCCGGGCACACTACA
CATGGCCGTCTAGGCTTGCAAACATGTCGGTGCTATCAATGCAGTAGTGC
AAGAGCGTATGAGCGCTGCTGCCGCACGGGGCGCGCCGCGCGCTGCAGCA
CGTGGCAGCGGAGCTACAGGCAATGCACCGGCTGCCACCGAGGCTGTAGG
GGAAGGCATTCATGCGCACGCTGCTGTTGCCTCATGGAAGTGAACAGTCG
GGGCTTTTGGGAGCAGATGCATCAATGCGGTGCATCGTGCCCATGCAGCA
TGAAGTCCAGCCTGGCATTTGCAGTGATTGAAGCACAAAGTCATGGTCAT
AGAGTGCGATGAATTGTGCTGCTGCCTTTGAGCCATCAATCCAATTATGA
TCCATTTCATCAAGAGTGTCAAAGCTGCGCCCTGCTCTCTGAGACCCTAG
TGTAGTCTGAACTTGCAGACTGTTCATAAATGCATGTAAACATTACAAAT
GTGCTCTAGCGGCCCAGATGCTACGTGGTACAGTGCTGTCACCGTGCCCA
GGTCCTCCAACACCTGTTGCCTACTTCGCTCGCTGTCGCAGTCGCCAGTA
ATGCGCAGCGTCACCATTAGCCAGCATGGCCAGATGTATCGCGCCGTGCA
GTGCGTAGACGCTGACATCCGCTCTGTCTGCTGTGTGCGCCGCTGCAGGC
CTTCGACGCTGCCGCGCCGTGGCAACGCAGATGGCGGCGGCGCGCAAATG
CAGCGCTGCTCAACGCTGTGCCGCCATGCTCAACGCTGTACGGTGGCTGC
AGCAGCAGCGAGCACATTGCCTGCCCTATATTCGCTGAACTACCAAACGG
ATGATTTAGATCAAAATCAGAGCCGCCACATTTTTACCGTAGCTTGTAAG
AGCGTCTTCTTCAGGCTGCCGGGCTCAGGATGCGCACAATGCAACGAGAA
CGGCGCAGGGTTGAGGCACGCGTTCGAGCGCCCCATGTGCCTATGCGGGT
CGCCCTGTGCAGCTGCGCTGCGCCACTCGATCACAAAATGTGTACTCGCT
TCCCCTGTCCACATCGTCTGTAGCTCGTTGTGCGTGGTGCTTGTCTTGGC
AAGCCGTAGGTGCTGTCAACGCTTTCGCCGAGGTGCATGTGCTGGTACCC
GAGCCCCCTG
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Coding sequence (CDS) from alignment at Contig_107:365315..366824-

>mRNA_11603 ID=mRNA_11603|Name=jgi.p|Trimin1|352065|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_107:365315..366824- (Tribonema minus UTEX_B_3156 )
ATGCAGCGCTGCTCAACGCTGTGCCGCCATGCTCAACGCTGTACGGTGGC
TGCAGCAGCAGCGAGCACATTGCCTGCCCTATATTCGCTGAACTACCAAA
CGGATGATTTAGATCAAAATCAGAGCCGCCACATTTTTACCGTAGCTTGT
AAGAGCGTCTTCTTCAGGCTGCCGGGCTCAGGATGCGCACAATGCAACGA
GAACGGCGCAGGGTTGAGGCACGCGTTCGAGCGCCCCATGTGCCTATGCG
GGTCGCCCTGTGCAGCTGCGCTGCGCCACTCGATCACAAAATGTGTACTC
GCTTCCCCTGTCCACATCGTCTGTAGCTCGTTGTGCGTGGTGCTTGTCTT
GGCAAGCCGTAGGTGCTGTCAACGCTTTCGCCGAGGTGCATGTGCTGGTA
CCCGAGCCCCC
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