mRNA_11569 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173844
Unique NamemRNA_11569
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A836CQN8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA)

HSP 1 Score: 244 bits (622), Expect = 9.040e-82
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 MHHVVLQADETPGRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 363
            MHHVVLQADETPGRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL
Sbjct:    1 MHHVVLQADETPGRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 121
[Close]
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A835Z4F5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.050e-50
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:   49 LRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQ 330
            LRRGKWS EEEAYT RIIHYFNTGVLQLPEGTTLR +LA+KL+CDPMRITKKFTGS+CLGKRVYHSCERTPA+  EI  SKEDL+ LE RFL+Q
Sbjct:    1 LRRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLAQ 94
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BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: D7FME2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.340e-42
Identity = 69/104 (66.35%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   52 RRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 363
            R+GKW+ EEEA TARIIHYF+ GVLQLP+GTTLR +LA+KL CDPMRITKKFTG+ CLGKRVYHSCERT AT    +++ E+LA LE RF ++LER +++R  +
Sbjct:    9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGI 112
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BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A6V1Q146_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK)

HSP 1 Score: 141 bits (355), Expect = 1.180e-38
Identity = 68/114 (59.65%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   19 QADETPGRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRAS 360
            Q+ + PG + LR+GKW+ EEE +T++IIHYFNTG+LQLPEGTTLR +LAEKL CDPMRITKKFTGS CLGKRVYH  +   AT A++ ++ ++L++LE+RF  +LER + +  S
Sbjct:   88 QSAQNPGNS-LRKGKWTVEEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRFKLRLEREKQKTRS 200
[Close]
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A7S1UUW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.170e-38
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:   25 DETP--GRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLE 336
            DE P   ++ LR+GKW+ EEE YT+RIIH+F+TGVL LPEGTTLR +LAEKL CDPMRITKKF G++CLGKRVYH C+R+P T A+I+ +K +LA LEQRF  ++E
Sbjct:  189 DEKPLKDKSKLRKGKWTVEEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRFRLRVE 294
[Close]
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A6H5L1T7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.630e-38
Identity = 69/104 (66.35%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:   52 RRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 363
            R+GKW+ EEEA TARIIHYF+ GVLQLP+GTTLR +LA+KL CDPMRITKKFTG+ CLGKRVYHSCERT AT    +++ E+LA LE RF ++LER +++R  +
Sbjct:    9 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGI 112
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BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A7S1ZRG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.560e-34
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   40 RAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRF 321
            R++LR+GKW+ EEE YT++IIHYF+ G+L LPEGTTLR FLA+KL CDPMRITKK+ G+ACLGKR YH CER   T A+I+ +  +L  LE RF
Sbjct:  362 RSNLRKGKWTLEEEEYTSKIIHYFSRGLLTLPEGTTLRSFLADKLNCDPMRITKKYAGAACLGKRAYHLCERPQVTIADIERANAELRQLEHRF 455
[Close]
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A7S1XJQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.050e-33
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:   31 TPGRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRR 354
            T  R HLR+GKW+ EEEAYT R+IH FN G+LQ+  GTTLR +L+EKL CDPMRITKK+ GS+C+GKR++  CERTP      ++S ++LA+LE  F ++LE  R  R
Sbjct:   20 TAVRCHLRKGKWTAEEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRAKLESSRSSR 127
[Close]
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A7S1BZD1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.590e-33
Identity = 60/99 (60.61%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   40 RAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLE 336
            R  LR+GKW+ EEE +T+RIIHYF+TG+L LPEGTTLR +L+E L CDPMRITKKF G++CLGKRVY  C+R+ AT  + + +K++LA+LEQRF ++++
Sbjct:  212 RKKLRKGKWTAEEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRAKVQ 310
[Close]
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Match: A0A1Z5J646_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J646_FISSO)

HSP 1 Score: 127 bits (318), Expect = 9.770e-32
Identity = 61/99 (61.62%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   40 RAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLE 336
            R+ LR+GKW+PEEE YT+RIIHYF+TG+L LPEG TLR +LAEKL CDPMRITKK+ G+ACLG+R Y   E  P T  EIQ ++  L +LE RF  ++E
Sbjct:   93 RSMLRKGKWTPEEEEYTSRIIHYFSTGLLILPEGHTLRSYLAEKLNCDPMRITKKYAGAACLGRRAYQYREHAPPTIGEIQLARTQLDDLEHRFRMRVE 191
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173844 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CQN8_9STRA9.040e-82100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4F5_9STRA4.050e-5082.98Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FME2_ECTSI1.340e-4266.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1Q146_HETAK1.180e-3859.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UUW2_9STRA3.170e-3865.09Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6H5L1T7_9PHAE7.630e-3866.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1ZRG3_9STRA8.560e-3463.83Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1XJQ1_9STRA4.050e-3356.48Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1BZD1_9STRA6.590e-3360.61Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5J646_FISSO9.770e-3261.62Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:134857..135219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173844|e_gw1.107.74.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DZRM@1|root,2S78E@2759|Eukaryota
Evalue2.2e-43
Seed ortholog2880.D7FME2
Hectar predicted targeting categoryother localisation
TranscriptId174166
TrackFilteredModels1
ProteinId173844
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173844gene_11569Tribonema minus UTEX_B_3156 geneContig_107 134857..135219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11569_1exon_11569_1Tribonema minus UTEX_B_3156 exonContig_107 134857..135219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11569CDS_11569Tribonema minus UTEX_B_3156 CDSContig_107 134857..135219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173844Trimin1|173844|e_gw1.107.74.1Tribonema minus UTEX_B_3156 polypeptideContig_107 134857..135219 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11569 ID=mRNA_11569|Name=jgi.p|Trimin1|173844|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_107:134857..135219+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACGTGGTGCTGCAAGCGGATGAGACTCCGGGCAGAGCTCACCT
CCGCCGGGGCAAGTGGTCCCCTGAGGAGGAGGCTTACACCGCACGCATCA
TCCACTATTTTAACACCGGCGTGCTGCAGCTGCCGGAAGGCACCACCCTC
AGGGTCTTTCTGGCGGAGAAGCTGCGTTGTGACCCCATGCGCATCACCAA
GAAGTTCACCGGCTCGGCGTGTCTTGGCAAGAGGGTGTATCACTCCTGCG
AGCGCACGCCAGCAACTAAGGCGGAAATACAGGAATCCAAGGAGGACCTG
GCCAATCTCGAGCAGCGGTTCCTGTCGCAGCTGGAACGTAGGCGCGATAG
GCGGGCCAGCCTT
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protein sequence of jgi.p|Trimin1|173844

>Trimin1|173844|e_gw1.107.74.1 ID=Trimin1|173844|e_gw1.107.74.1|Name=jgi.p|Trimin1|173844|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MHHVVLQADETPGRAHLRRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTL
RVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDL
ANLEQRFLSQLERRRDRRASL
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mRNA from alignment at Contig_107:134857..135219+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11569 ID=mRNA_11569|Name=jgi.p|Trimin1|173844|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_107:134857..135219+ (Tribonema minus UTEX_B_3156 )
ATGCACCACGTGGTGCTGCAAGCGGATGAGACTCCGGGCAGAGCTCACCT
CCGCCGGGGCAAGTGGTCCCCTGAGGAGGAGGCTTACACCGCACGCATCA
TCCACTATTTTAACACCGGCGTGCTGCAGCTGCCGGAAGGCACCACCCTC
AGGGTCTTTCTGGCGGAGAAGCTGCGTTGTGACCCCATGCGCATCACCAA
GAAGTTCACCGGCTCGGCGTGTCTTGGCAAGAGGGTGTATCACTCCTGCG
AGCGCACGCCAGCAACTAAGGCGGAAATACAGGAATCCAAGGAGGACCTG
GCCAATCTCGAGCAGCGGTTCCTGTCGCAGCTGGAACGTAGGCGCGATAG
GCGGGCCAGCCTT
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Coding sequence (CDS) from alignment at Contig_107:134857..135219+

>mRNA_11569 ID=mRNA_11569|Name=jgi.p|Trimin1|173844|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_107:134857..135219+ (Tribonema minus UTEX_B_3156 )
ATGCACCACGTGGTGCTGCAAGCGGATGAGACTCCGGGCAGAGCTCACCT
CCGCCGGGGCAAGTGGTCCCCTGAGGAGGAGGCTTACACCGCACGCATCA
TCCACTATTTTAACACCGGCGTGCTGCAGCTGCCGGAAGGCACCACCCTC
AGGGTCTTTCTGGCGGAGAAGCTGCGTTGTGACCCCATGCGCATCACCAA
GAAGTTCACCGGCTCGGCGTGTCTTGGCAAGAGGGTGTATCACTCCTGCG
AGCGCACGCCAGCAACTAAGGCGGAAATACAGGAATCCAAGGAGGACCTG
GCCAATCTCGAGCAGCGGTTCCTGTCGCAGCTGGAACGTAGGCGCGATAG
GCGGGCCAGCCTT
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