mRNA_11561 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352040
Unique NamemRNA_11561
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A835ZP26_9STRA (RanBD1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP26_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 5.810e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query:    1 MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 774
            MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD
Sbjct:    1 MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGXXXXXXXXXXXXXXXXXXXXXXPVQSDGXXDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 258          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S2K2B0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2B0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.770e-14
Identity = 69/215 (32.09%), Postives = 92/215 (42.79%), Query Frame = 1
Query:  277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRP-------------------------------------------------EWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHESGKAD 774
            D+ NGEE E  +LQ RAKLFRL  KAA                S   P                                                 EW EVGIGP+RVL+ +         + + +  +R VMRRE HPGG GTKV+LN+ L          +K VRLT V A+G  P  +LFK+KT DE   L++ I   ++  +  E+G+A+
Sbjct:  256 DIANGEEEEECVLQCRAKLFRLCKKAAAAAVPQEAAEGTGLAASHVGPPTLPSAAKNDSVDDSKDEHEXXXXXXXTDAKAAKDGKEIKSDDSSSSGTEWREVGIGPLRVLRTE---------SKSKQITTRCVMRREMHPGGPGTKVILNMKLIKLANIKQSGEKFVRLTTV-AEGGEPVNYLFKLKTVDEVERLIKHIESGIDDAS--ETGEAE 458          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S1XJQ4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-12
Identity = 72/226 (31.86%), Postives = 102/226 (45.13%), Query Frame = 1
Query:  196 GTEPGSPEQSLSQEPT-VIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRL---------------------------EAKAAPGXXXXXXXXXXXXXXSDTRP---------EWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHAQHES 762
            G   G  E   ++EP  V+ +A ++      NGEE E    +VRAKL+R                            EAK   G      X          +          +WVEVGIGP+R+L  +     G+  A       R+VMRRES PGG GTKV+LNVAL  +V    Q + ++RL+ + +  S PTT+L +VK +D+   LL    E+VE   + E+
Sbjct:  211 GGADGGAEPKAAEEPAPVVSLAEVK----TENGEEAEDVAHEVRAKLYRFAPAIVGDEDKESVKLVQSSAVAKASKTEAKEEEGKAEGESXAKDNGAAEAAKDGEAAKVAAMKWVEVGIGPLRLLARRADDEGGKRRA-------RLVMRRESAPGGPGTKVILNVALNEQVAVVKQMETSMRLSCMDSVTSKPTTYLLRVKRSDQCDDLL----EKVESFTKGEN 421          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7S1Z143_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z143_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.430e-11
Identity = 64/190 (33.68%), Postives = 85/190 (44.74%), Query Frame = 1
Query:  277 DVRNGEEGERTLLQVRAKLFRLE-------------------------------AKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAK----GSPPTT-FLFKVKTNDEAAALLRCIREQV 738
            DV NGEE E  + Q RAKLF+L+                               +   P                + + +W EVGIGPVR+L     P+A           +RVV RRES PGG GTK++LNVALR +     Q+DK VRL  V  +    GS  +  +L+KVKT  EA  L + + E +
Sbjct:  244 DVANGEENETCVFQTRAKLFKLDTTKPSSEPSPQESQDSIGSSMAATSVPPSSSSSLGPKKTNSTDADSKLEESQEEKQQWKEVGIGPVRILTL---PSAST---------TRVVQRRESTPGGPGTKLILNVALRKECHVFRQADKYVRLATVEQEEGEEGSLSSVMYLWKVKTVGEADDLEKFLGEGI 421          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: D0NHN9_PHYIT (RanBD1 domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NHN9_PHYIT)

HSP 1 Score: 73.2 bits (178), Expect = 5.710e-11
Identity = 53/161 (32.92%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSP-------PTTFLFKVKTNDEAAALLRCIREQV 738
            ++ NGEEGER L++ RAKLF+L  K                       ++ EVGIGPVRVL A+   A  E      +  +RVVMRRES+P G GTK+L+N +L   +    +++K + LT + A   P       P T+L +  ++++   ++  I+  +
Sbjct:  211 ELANGEEGERILVEKRAKLFKLVEK-----------------------DYTEVGIGPVRVLNAKDAKADDE------KVMARVVMRRESYPHGPGTKLLMNASLGSCLLCEKKTEKTMLLTVLEANEDPEADKKFTPVTYLMRFGSSEDLDVVMMRIQTHM 342          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A5D6YEL9_9STRA (RanBD1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEL9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.800e-10
Identity = 56/136 (41.18%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  238 PTVIRVAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAV 645
            P    V  L D  ++ NGEEGER L++ RAKLF+L  K                       E+ EVGIGP+RVL+      A E AA+A     R+VMRRES+P G GTK+LLN  L   +    ++DKA+ LT V
Sbjct:  192 PESTFVPALTDA-EIANGEEGERILIEKRAKLFKLGDK-----------------------EFAEVGIGPLRVLRL-----ATESAASA-----RLVMRRESYPRGPGTKLLLNARLNACLACIEKTDKAMLLTVV 293          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A8K1FEP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEP6_PYTOL)

HSP 1 Score: 70.5 bits (171), Expect = 3.230e-10
Identity = 58/169 (34.32%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  253 VAGLQDPRDVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVL---AKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHA 750
            VA L D  ++ NGEE E  L++ RAKLF+                           ++ EVG+GP RVL+   P  A +  AA  +A +R+VMRRESHP G GTK+LLN  L   +    +++KA+ L       A    PTTFL +  + ++  AL   ++  +  HA
Sbjct:  157 VAALADA-ELANGEEDETILVEKRAKLFKFVDS-----------------------DYSEVGVGPFRVLK---PKDAQDDDAA--KASARMVMRRESHPHGPGTKLLLNARLSACLSCVKKAEKALMLVIAETDEADKIKPTTFLLRFASQEDLLALQDAVKALLPAHA 296          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A7R9YC94_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC94_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.610e-10
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  424 WVEVGIGPVRVLQAQVPPAAGEGAAAAARAP------SRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALL 717
            WVEVGIGP+R+L  +   ++    +  A AP      +R+VMRRES PGG GTKV+LNVAL  + E    +D  +RL+ +      P T+L +VK  D+A  LL
Sbjct:  337 WVEVGIGPLRLLTRKTSRSSEGDNSGEAPAPDERQDRARLVMRRESAPGGPGTKVILNVALSTQTEITMLTDTNLRLSCLDGVTKKPATYLVRVKRADQAEELL 440          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A6A3RDJ7_9STRA (RanBD1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RDJ7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.370e-10
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLA-------KGSPPTTFLFKVKTNDEAAALL 717
            ++ NGEEGE+ L++ RAKLF+L  K                       ++ EVGIGP+RVL A      G+      ++ +RVVMRRESHP G G+K+L+N +L   +    +++K + LT + A       K   P T+L +  + D+  A++
Sbjct:  218 ELANGEEGEQILVEKRAKLFKLVEK-----------------------DYAEVGIGPLRVLNATDAKTDGD------KSTARVVMRRESHPHGPGSKLLMNASLGSCLLCEKKTEKTMLLTVLEANEDAEAEKKVVPVTYLMRFGSPDDLDAVM 342          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A2P4XGM7_9STRA (Zinc ion binding protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XGM7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.740e-9
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  277 DVRNGEEGERTLLQVRAKLFRLEAKAAPGXXXXXXXXXXXXXXSDTRPEWVEVGIGPVRVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKVEAASQSDKAVRLTAVLA-------KGSPPTTFLFKVKTNDEAAALLRCIREQV 738
            ++ NGEEGE+ L++ RAKLF+L  K                       ++ EVGIGP+RVL A+      E      ++ +R+VMRRES+P G GTK+L+N +L   +    +++K + LT + A       K   P T+L +  + ++   ++  I+  +
Sbjct:  206 ELANGEEGEQILVEKRAKLFKLVEK-----------------------DYAEVGIGPLRVLDAKDAKIEDE------KSTARIVMRRESYPHGPGTKLLMNASLSSCLLCEKKTEKTMLLTVLEANEDSEAEKKFVPATYLMRFGSPEDLDVVMMRIQTHI 337          
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Match: A0A835YG99_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG99_9STRA)

HSP 1 Score: 960 bits (2482), Expect = 0.000e+0
Identity = 762/762 (100.00%), Postives = 762/762 (100.00%), Query Frame = 1
Query:    1 MTHRDANLYGILGIEPNATAEDIRRAYLAKARACHPNITSALNDARRNHVCRRGSVAXXXXXXXXXXXXXXAPHRAXXXXXXXXXXXXXXXAPHAAEAFKRVAHAHETLSHPLRRARYDEAHAGGGMSSGAHYTYPRGSGYGGYAAGGEDLRGFAGRASAARGSAAECAHDWAHAGGGMSSGAHYPYPRGSYSGYTGRGPAGVRWQGLRCQSGGYGGSYAAGGEDLRSSRAGPPLPEARALRGARASRSSASAFNALDVFVHPRFIASCXXXXXXXXXXXXXXXXXMFGVLPLLLLGGGLVGGLLSTDDGATKRAPQGDKVPAWFNPASQRWETPSPWDPRYRAQLARNPEQMVAPVAAAATATGAXXXXXXXVTGAFAXXXXXXXXXXXXAGSSGTCLPTPPLLPALALPLPQGCRSQLQWHLPXXXXXXXXXXPQGAPAVTSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLCRHCDGVFDDDSKMIDSFISRGALGTALVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASKAAALRVFIGCSALSWVQGSSAQAADGSAAQPAHLRGLCLQWSVAAAKSSVNINSGARNAPARGTPNSSAPRANHTGMQQMAARTAHRRRCVRAAADASRNLKAAARLCKAGARSFRNRIPPVRSVS 2286
            MTHRDANLYGILGIEPNATAEDIRRAYLAKARACHPNITSALNDARRNHVCRRGSVAXXXXXXXXXXXXXXAPHRAXXXXXXXXXXXXXXXAPHAAEAFKRVAHAHETLSHPLRRARYDEAHAGGGMSSGAHYTYPRGSGYGGYAAGGEDLRGFAGRASAARGSAAECAHDWAHAGGGMSSGAHYPYPRGSYSGYTGRGPAGVRWQGLRCQSGGYGGSYAAGGEDLRSSRAGPPLPEARALRGARASRSSASAFNALDVFVHPRFIASCXXXXXXXXXXXXXXXXXMFGVLPLLLLGGGLVGGLLSTDDGATKRAPQGDKVPAWFNPASQRWETPSPWDPRYRAQLARNPEQMVAPVAAAATATGAXXXXXXXVTGAFAXXXXXXXXXXXXAGSSGTCLPTPPLLPALALPLPQGCRSQLQWHLPXXXXXXXXXXPQGAPAVTSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLCRHCDGVFDDDSKMIDSFISRGALGTALVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASKAAALRVFIGCSALSWVQGSSAQAADGSAAQPAHLRGLCLQWSVAAAKSSVNINSGARNAPARGTPNSSAPRANHTGMQQMAARTAHRRRCVRAAADASRNLKAAARLCKAGARSFRNRIPPVRSVS
Sbjct:    1 MTHRDANLYGILGIEPNATAEDIRRAYLAKARACHPNITSALNDARRNHVCRRGSVAXXXXXXXXXXXXXXAPHRAXXXXXXXXXXXXXXXAPHAAEAFKRVAHAHETLSHPLRRARYDEAHAGGGMSSGAHYTYPRGSGYGGYAAGGEDLRGFAGRASAARGSAAECAHDWAHAGGGMSSGAHYPYPRGSYSGYTGRGPAGVRWQGLRCQSGGYGGSYAAGGEDLRSSRAGPPLPEARALRGARASRSSASAFNALDVFVHPRFIASCXXXXXXXXXXXXXXXXXMFGVLPLLLLGGGLVGGLLSTDDGATKRAPQGDKVPAWFNPASQRWETPSPWDPRYRAQLARNPEQMVAPVAAAATATGAXXXXXXXVTGAFAXXXXXXXXXXXXAGSSGTCLPTPPLLPALALPLPQGCRSQLQWHLPXXXXXXXXXXPQGAPAVTSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLCRHCDGVFDDDSKMIDSFISRGALGTALVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASKAAALRVFIGCSALSWVQGSSAQAADGSAAQPAHLRGLCLQWSVAAAKSSVNINSGARNAPARGTPNSSAPRANHTGMQQMAARTAHRRRCVRAAADASRNLKAAARLCKAGARSFRNRIPPVRSVS 762          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352040 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZP26_9STRA5.810e-140100.00RanBD1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2K2B0_9STRA2.770e-1432.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1XJQ4_9STRA1.590e-1231.86Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1Z143_9STRA4.430e-1133.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D0NHN9_PHYIT5.710e-1132.92RanBD1 domain-containing protein n=12 Tax=Phytopht... [more]
A0A5D6YEL9_9STRA2.800e-1041.18RanBD1 domain-containing protein n=1 Tax=Pythium b... [more]
A0A8K1FEP6_PYTOL3.230e-1034.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9YC94_9STRA6.610e-1043.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6A3RDJ7_9STRA8.370e-1033.12RanBD1 domain-containing protein n=2 Tax=Phytophth... [more]
A0A2P4XGM7_9STRA6.740e-930.43Zinc ion binding protein n=2 Tax=Phytophthora palm... [more]

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BLAST of jgi.p|Trimin1|352040 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YG99_9STRA0.000e+0100.00J domain-containing protein n=1 Tax=Tribonema minu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:80699..84635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352040|estExt_Genemark1.C_Ctg_1070009
BRITEko00000,ko00001
KEGG Pathwayko05166,map05166
KEGG koko:K15304
DescriptionRan-binding domain
COG categoryU
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5171@1|root,KOG0864@2759|Eukaryota,3QBQ7@4776|Peronosporales
Evalue5.96e-12
Seed ortholog4787.PITG_11980T0
Hectar predicted targeting categoryother localisation
TranscriptId352362
TrackFilteredModels1
ProteinId352040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352040gene_11561Tribonema minus UTEX_B_3156 geneContig_107 80699..84635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352040Trimin1|352040|estExt_Genemark1.C_Ctg_1070009Tribonema minus UTEX_B_3156 polypeptideContig_107 80699..84477 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11561_1exon_11561_1Tribonema minus UTEX_B_3156 exonContig_107 80699..80714 +
exon_11561_2exon_11561_2Tribonema minus UTEX_B_3156 exonContig_107 81259..81419 +
exon_11561_3exon_11561_3Tribonema minus UTEX_B_3156 exonContig_107 81851..81926 +
exon_11561_4exon_11561_4Tribonema minus UTEX_B_3156 exonContig_107 82650..82864 +
exon_11561_5exon_11561_5Tribonema minus UTEX_B_3156 exonContig_107 83366..83581 +
exon_11561_6exon_11561_6Tribonema minus UTEX_B_3156 exonContig_107 84385..84635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11561CDS_11561Tribonema minus UTEX_B_3156 CDSContig_107 80699..80714 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11561UTR3_11561Tribonema minus UTEX_B_3156 three_prime_UTRContig_107 84478..84635 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11561 ID=mRNA_11561|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=935bp|location=Sequence derived from alignment at Contig_107:80699..84635+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCAGATCGGAGCAAACCCCTTTCAGGCGGCGCTGAGCACATTCGG
AGGGGGCGGGTTCGGCAGCCCCAGTGGCGCTGTTGGCGGCATCTTTGGGG
GCGGCGGCGGCGGGCTGGGCATGGGCATGGGGGGGTTCGGCGCAGGCGCA
GCGCAGGGTACAGGGAGTCCAGTTCAGAGCGATGGTGAGGGAGACGGAAC
GGAGCCGGGCTCACCGGAGCAGTCCCTGTCACAGGAGCCCACTGTCATAA
GAGTGGCGGGCCTGCAGGACCCCAGGGACGTGCGCAATGGCGAGGAGGGC
GAGCGCACGCTGCTGCAGGTGCGCGCAAAGCTGTTCCGGCTTGAGGCCAA
GGCCGCGCCAGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGCGGCG
GCAGCAGCGACACGCGGCCGGAGTGGGTTGAAGTTGGCATCGGGCCGGTT
CGCGTGCTGCAGGCTCAGGTGCCGCCGGCAGCGGGCGAAGGCGCGGCAGC
GGCGGCGCGCGCCCCGTCGCGTGTCGTCATGCGACGCGAGTCGCACCCCG
GCGGCGCGGGCACCAAGGTGCTGCTCAATGTCGCGCTGCGCGGCAAGGTG
GAGGCCGCGAGCCAGTCGGACAAGGCGGTGCGCCTCACGGCGGTGCTCGC
CAAGGGGTCGCCGCCGACGACGTTTCTGTTCAAGGTCAAGACGAACGACG
AGGCCGCAGCGCTGCTCAGGTGCATCCGCGAGCAGGTGGAGCAGCACGCG
CAGCACGAGAGCGGCAAAGCGGACTGAAGCCGCGGCGCAGCGCCGCGGGC
GACCCGGACACCCTGAGGCACCCCCGCAGGCGCCGCGCATCGTCATTGCT
GTCAATGACTGTTTATGCTGCAGCGCGCATGTGACAGCAGGGACGGGGGG
CGCAGATGGGACATGCGCCCCCGACAACTCTGCCT
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protein sequence of jgi.p|Trimin1|352040

>Trimin1|352040|estExt_Genemark1.C_Ctg_1070009 ID=Trimin1|352040|estExt_Genemark1.C_Ctg_1070009|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MWQIGANPFQAALSTFGGGGFGSPSGAVGGIFGGGGGGLGMGMGGFGAGA
AQGTGSPVQSDGEGDGTEPGSPEQSLSQEPTVIRVAGLQDPRDVRNGEEG
ERTLLQVRAKLFRLEAKAAPGGGGGGGGGGGGGGSSDTRPEWVEVGIGPV
RVLQAQVPPAAGEGAAAAARAPSRVVMRRESHPGGAGTKVLLNVALRGKV
EAASQSDKAVRLTAVLAKGSPPTTFLFKVKTNDEAAALLRCIREQVEQHA
QHESGKAD*
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mRNA from alignment at Contig_107:80699..84635+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11561 ID=mRNA_11561|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3937bp|location=Sequence derived from alignment at Contig_107:80699..84635+ (Tribonema minus UTEX_B_3156 )
ATGTGGCAGATCGGAGGTAAGAACGATGCCTCATTGCTTCTGCGGCACCC TCTGCTCTGCTGCTGCTATCGCTGCTGTTCTACCGCTGATGCGCTCTGCC CTACCATGTCGCCACAGCATGTGTAGCTTGCTTCAATTGCTTGTGCATTC GACTGACGGCGTCCTCTTGAGCCCGCGTCAGCGCGCCAGCTTCGCTGGTG CTCAACGTACACAATTGCCAACCGAAACGTTGGCGTGTCACTCAGTGATG TGAATGCTTTCGCCAAACATTGCTCTCAGCAGTGACGAAGCAACAACACC CCAGCAGCCAGCTGCCAATGGCAGTACATCGACCCCGCAATCAACATCAC AAACTGCGTTGCAATCAACGCCGACATCAGCGGCAGCGGCGCCGGCCACA AGCAATGGCGCCGCCAAATCTGCCGCGCTGTCTCCAGCGGCTACGACAAT GCCACCACCACCAGCGCCAGCAGCAGGAAGCAGCCAGAATGCATTCAGCG CGTTCTCCGCTGGGGGGGCAGGGGGGACACCCGCATTTGGCGGTTTCTCC TCCGCAACAGCAAACCCCTTTCAGGCGGCGCTGAGCACATTCGGAGGGGG CGGGTTCGGCAGCCCCAGTGGCGCTGTTGGCGGCATCTTTGGGGGCGGCG GCGGCGGGCTGGGCATGGGCATGGGGGGGTTCGGCGCAGGCGCAGCGCAG GGTACAGGGAGTCCAGTTCAGGTACATACTTACCCCTTGTGCGCGAATAG GCGGCTCGCTTGTTTGAGGGCACGGTCTGCAAGTGTGTGACGCTTGTTTG AAGCTGTGTTGGTGGCGTGCCTGTCGTCACACGTTCGTCGTATGAGGGGC GCTGCGCCTGTGCCAGCGGACATGACTCATGAGTGATTGACCAGTGGTTT GTTGTGCCAGACAAGTTCACCTTGGCGATTATCACAGCATCACGAACCAA ATCTGCCTCTCTTGTATATCAGAGCTGACCGTATGGTTTAAAGCATGCAG ATGCAGTTCCTGCGGCTGCTGAGGTTGCTGTGTTTGTGCACGTCTGCCAG GACTGCTGGAGGCAAGAGCACTTTTGAAAGTGTGATCGCAGCGTACTTTA CACATAAGCGCTGTTCTGACAAGCTGATTGTGTCCCTCATTGTCACCCTC AGAGCGATGGTGAGGGAGACGGAACGGAGCCGGGCTCACCGGAGCAGTCC CTGTCACAGGAGCCCACTGTCATAAGAGGTGCGCACTGCAACTGGATGAG TGCAGGCTTCACACACATGCACACACACGTGTCGAACCTTCTCATGCTGC TTGCCACCTTTGCCTGCCGGAGCGCATGGCGCTGTCATGCACGATGAAAT GGGAGCTTTCATCCTGGTGGTGAAGCGGGCACTTGCGGTATAGAGCGCAT ACCTCTGATGTTTACATGAGTCTCACCTATGTCCACGAGTCACACAGAAG TATGGCAGTTGGTATTCAAAGACTCGCTTCATCAATCTTCGTGTCCACAC GTGTCGCCTTTCGGCGCGGACGATGCTATCTACAGCAGTCGCGCAGCTCA CCACATGCTGCGCGCTAGTCCTGCAGGACTGCTGAGGCGCTGCCGCTTTT GTTTCAGCCTCTCAGAGTGATCGTCGCACTACCGCAGCATCCAGCACCGC CATTGCCGTACCCTGTCTGTGCGGGGGTGTCCTGAATGTTTGCGTAGCGC AGTACGGCCTGCAAGAGGCACGCAAGGCGTCACATGGGTGCGCCTGGCCC AGGGCTAGCGCCTAAACTCAGACGGCCTTGGCGCACCTGACTTTTAGTTT CGAGCCCTGGCAAAACTAGTTTAGCCACGGCGCGACTGGCGCAACTCTTA TTAAGGCTTCTAGGCCTTCTACAGTCACTATTGAGGCCCTCCCCTATCGA GCGCGCATGATCGTGAAGTGCCATCGCCGGCGCGGCTCTCGCTGTCTGCA GTGGCGGGCCTGCAGGACCCCAGGGACGTGCGCAATGGCGAGGAGGGCGA GCGCACGCTGCTGCAGGTGCGCGCAAAGCTGTTCCGGCTTGAGGCCAAGG CCGCGCCAGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGCGGCGGC AGCAGCGACACGCGGCCGGAGTGGGTTGAAGTTGGCATCGGGCCGGTTCG CGTGCTGCAGGCTCAGGTACTACCGCGCAGCATTTCTTCATTTCTTGCTC GACTTGCGCACAGAATGCAGTGCTACTTGCGCACAGAATGCAGTGCTTTG TTGTTGGTTCAGAGTGCGGCAGACAGCAGCATCGCATAGTGTCGTGTTCT TTTTGCGCTGTAATTGGCATGTCCACTTCCCCAGACGTGCCAGGTGCCTC TCGTTTGAAGCCTCTGCAAAAGTACCAAGTCACAGTTGCAGGCGAGCGAA CTGCATGCCAGTGATTTTCATTTGCCCCGTCAAGATTACGCGCACCTGTC GCGCCGCCTTCGCATCGAGCCGCTTGATTGACATCCCCTCATCATAGTTG ATGTTTAGCCACAATCGAAGTTCAGTCTCAGTTGAAATTGAGAGCGAACA GCACGTCGCACGTCACCCACAAACGAACAACAGAAGACAACGGCTCGCCC AGCCGTGCTGCCCTGCGCGGCGGCGCCGCCGCTGACTTCAGCACCTCGCT CTGAACTGCGCCCTCAGGTGCCGCCGGCAGCGGGCGAAGGCGCGGCAGCG GCGGCGCGCGCCCCGTCGCGTGTCGTCATGCGACGCGAGTCGCACCCCGG CGGCGCGGGCACCAAGGTGCTGCTCAATGTCGCGCTGCGCGGCAAGGTGG AGGCCGCGAGCCAGTCGGACAAGGCGGTGCGCCTCACGGCGGTGCTCGCC AAGGGGTCGCCGCCGACGACGTTTCTGTTCAAGGTGAGCGCTGTCGGAGC GCGCCGCCACTGGGCATTACGTAGTGCATGCACTGCAGCGTGGCGGTTGC AAGCTATGCGACGTTCCTCTTCAAGGTCAGCACGGTCGGACCGCGCCGCC GCCGGCTCTTACGTATAAGCGAGTGCCCTGCGGCATGGCGCCGCGAGCTG GTTTGTTGGAGCGGGTTGCCTGGTGCCGCCAGCTACTGCAACGCTGAGAT CTCAGGTGTAGGTGCCTGGTAAGTGCGCCTGATGCGGACCTACGACCCTT TTTGGCAGTTGCAGGTCGGCAGCTGCAGTCTCCATTCTAGCAGCTTCTGC CAGAGCCCTCGCATGGCGCAGTCTGCTGCATTGTGGTGCGGCGCAGTACG TGGCTGCTGGAGCGTTGCTGGCATGCCCTTGAATTTGATTTTCATGAAGA CATGTCTATAATTTGCTGTCCTTCAAGTCATTTACTTGCACAGCTAGATG GGCTAAACCACTCAGGCAATCGGATTGGACGCTGGAGCATCATCTGATTT CGTTGTCATGTACAGTAAGTAGTGCATGGCGTGACCCCTGCATGAATACT CTGCAAAGTGTCGCACAAGGCATTTTAAGACCATTTCATTGCCCAGATGA ATGCTCCGCCAGGTAGTTCGGGTGCTGCATTGCCAATCAACTAAAGCACA AGATATGGTTATCATACGCCCTGCTCTTTTCCTGTCATGATAGCGTGCGT GCAGCCTTCTGGCATGCTGCTGCTGCACCTTGCTTGGTGCGCGGAGCCCG TCATAATCAAAATGCTGATGTTGTCATGCGCGACAGGTCAAGACGAACGA CGAGGCCGCAGCGCTGCTCAGGTGCATCCGCGAGCAGGTGGAGCAGCACG CGCAGCACGAGAGCGGCAAAGCGGACTGAAGCCGCGGCGCAGCGCCGCGG GCGACCCGGACACCCTGAGGCACCCCCGCAGGCGCCGCGCATCGTCATTG CTGTCAATGACTGTTTATGCTGCAGCGCGCATGTGACAGCAGGGACGGGG GGCGCAGATGGGACATGCGCCCCCGACAACTCTGCCT
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Coding sequence (CDS) from alignment at Contig_107:80699..84635+

>mRNA_11561 ID=mRNA_11561|Name=jgi.p|Trimin1|352040|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_107:80699..84635+ (Tribonema minus UTEX_B_3156 )
ATGTGGCAGATCGGAGCAAACCCCTTTCAGGCGGCGCTGAGCACATTCGG
AGGGGGCGGGTTCGGCAGCCCCAGTGGCGCTGTTGGCGGCATCTTTGGGG
GCGGCGGCGGCGGGCTGGGCATGGGCATGGGGGGGTTCGGCGCAGGCGCA
GCGCAGGGTACAGGGAGTCCAGTTCAGAGCGATGGTGAGGGAGACGGAAC
GGAGCCGGGCTCACCGGAGCAGTCCCTGTCACAGGAGCCCACTGTCATAA
GAGTGGCGGGCCTGCAGGACCCCAGGGACGTGCGCAATGGCGAGGAGGGC
GAGCGCACGCTGCTGCAGGTGCGCGCAAAGCTGTTCCGGCTTGAGGCCAA
GGCCGCGCCAGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGCGGCG
GCAGCAGCGACACGCGGCCGGAGTGGGTTGAAGTTGGCATCGGGCCGGTT
CGCGTGCTGCAGGCTCAGGTGCCGCCGGCAGCGGGCGAAGGCGCGGCAGC
GGCGGCGCGCGCCCCGTCGCGTGTCGTCATGCGACGCGAGTCGCACCCCG
GCGGCGCGGGCACCAAGGTGCTGCTCAATGTCGCGCTGCGCGGCAAGGTG
GAGGCCGCGAGCCAGTCGGACAAGGCGGTGCGCCTCACGGCGGTGCTCGC
CAAGGGGTCGCCGCCGACGACGTTTCTGTTCAAGGTCAAGACGAACGACG
AGGCCGCAGCGCTGCTCAGGTGCATCCGCGAGCAGGTGGAGCAGCACGCG
CAGCACGAGAGCGGCAAAGCGGACTGA
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