mRNA_11553 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173923
Unique NamemRNA_11553
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A836CMJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ5_9STRA)

HSP 1 Score: 391 bits (1004), Expect = 4.010e-135
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1 
Query:    1 PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGGGTGAXXXXXKRKAGDAMAALETDLEALERHAEKIRLAKAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEEDEEGGGEDGGGDVRLVQKAVPEAVFGSAKEALERERAAEGGAGGKGMGALERMKARKR 810
            PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGGGTGAXXXXXKRKAGDAMAALETDLEALERHAEKIRLAKAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEEDEEGGGEDGGGDVRLVQKAVPEAVFGSAKEALERERAAEGGAGGKGMGALERMKARKR
Sbjct:    1 PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGGGTGAXXXXXKRKAGDAMAALETDLEALERHAEKIRLAKAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEEDEEGGGEDGGGDVRLVQKAVPEAVFGSAKEALERERAAEGGAGGKGMGALERMKARKR 270
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 8.370e-60
Identity = 146/258 (56.59%), Postives = 168/258 (65.12%), Query Frame = 1 
Query:    4 VYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKAL-GGGTGAXXXXXKRKAGDAMAALETDLEALERHAEKIRLAKAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEEDEEG--------GGEDGGGDVRLVQKAVPEAVFGSAKEALERERAA 750
            VYEKAI+ L E+ ARE+C+ FA +EQ LGEIDRARAV  +GSQFADPRR + YW AWH+FEVAHGNEETFREMLR K SV MSFS VNYMAAEMM AD+PVTSDA+A+A   AK+  L GGGT       KRKA D   + +T++EALER A+KIR AKA G                               XXXXXXXXXXXXXXX                GG+D G D+R+ QK VP AVFGSAKEAL +E+AA
Sbjct:  105 VYEKAIKDLNEEGAREMCLSFAAVEQKLGEIDRARAVWTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQVNYMAAEMMSADLPVTSDADAMAKQRAKEAELAGGGTMLASGSTKRKA-DQGGSGQTNMEALERQADKIRAAKAQGAAGAAGSAVEANPEEIDLDMDMDDAAEEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDDNG-DIRITQKEVPSAVFGSAKEALAKEKAA 360
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S2V324_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V324_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.980e-47
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:    4 VYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALG--------------GGTGAXXXXXKRKAGDAMAALETDLE 438
            +YEKAIE LG++D+ + C  +A+LE+ LGEIDRARA+L HGSQFADPRRH +YW AWHDFEV HGNE+TFREMLRVKRSV ++FS V Y A  M+G ++ VTSDAEA+A   A+D+A G              GG GA     KRKA +  A+ ETD+E
Sbjct:   13 IYEKAIEGLGDEDSCQACEAYAQLERKLGEIDRARALLVHGSQFADPRRHPAYWKAWHDFEVGHGNEDTFREMLRVKRSVQVAFSQVTYSAETMIG-ELGVTSDAEAVAKQLARDQAQGRTPSVHFQAAKTEAGGAGAGQ---KRKAEEGGASAETDME 167
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S3XMF3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMF3_HETAK)

HSP 1 Score: 158 bits (399), Expect = 1.780e-43
Identity = 135/255 (52.94%), Postives = 161/255 (63.14%), Query Frame = 1 
Query:    1 PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGGGTGAXXXXX------KRKAGDAMAALETDLEALERHAEKIRLAKAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEEDEEGGGEDGG-----GDVRLVQKAVPEAVFGSAKEAL 732
            PV +KA+E L +  A+ +C+QFA LE+ LGE+DRARA+  HGSQFADPR+   YW  WH+FEV+ GNEETFREMLRVKRSV  +F+ VNYMAAEM   + PV SDAEA A  A +D+  G G G            +  AG   AA   +L+ LER A +I+ A   G XXXXXXXXXXXXXXXXXXXXXX     XXXXXXXX                EGG E  G     G VR+ QK++P AVFGSA + L
Sbjct:   12 PVLQKAVEKLDDAGAKAMCLQFADLEKKLGEVDRARALFTHGSQFADPRKDPGYWKQWHEFEVSFGNEETFREMLRVKRSVQTAFAQVNYMAAEMASGEAPVPSDAEAAAKQAERDRLAGRGPGVMAPGGGAMQFVEAAAGKRKAAA-ANLDDLERQAARIKAATGGGAXXXXXXXXXXXXXXXXXXXXXXPEEIDXXXXXXXX----------------EGGNEGDGVVDEDGQVRIEQKSIPSAVFGSAADQL 249
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S2AYY7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYY7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.670e-38
Identity = 80/167 (47.90%), Postives = 109/167 (65.27%), Query Frame = 1 
Query:    4 VYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALG----------GGTGAXXXXXKRKAGDAMAALETDLEALERHAEKIRLA 474
            ++E AI++L + +A+++ + +A +E+ LGE+DRARA+ +HG QF +PRR   YW  WHDFEVAHGNE+TFR+MLR+KRSV  +F+   +   +M  ++ PV SDAEALA  A +D  LG           G G      KRKA +  AA ETD+EALER A KI  A
Sbjct:   33 IHEVAIKSLPDKEAQQMSLTYATMEKKLGEVDRARAIFSHGGQFTNPRREPKYWKEWHDFEVAHGNEDTFRDMLRIKRSVQTAFAQETFH--DMGNSEAPVQSDAEALAKQAERDARLGITPAAGDPGTAGVGVNAAGVKRKAAEGGAA-ETDMEALERQASKIMAA 196
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S4A7Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7Z3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.810e-35
Identity = 79/155 (50.97%), Postives = 107/155 (69.03%), Query Frame = 1 
Query:    4 VYEKAIEALG-EDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGGGTGAXXXXXKRKAGDAMAALETDLEALERHAEKI 465
            VYE+A++AL  +DDA+++C+ FA LE+ LGE+DRARA+LAHG+QFADPR  D YW  W DFEV HGNE+TFREMLRVKRSV  + S+  Y+A  ++  D P+ SDAEA       ++ + G   A     K+++ D   A ET++ ALER A +I
Sbjct:  717 VYERAVKALNVDDDAKKMCLAFASLERGLGEVDRARAILAHGAQFADPRLDDHYWQTWRDFEVQHGNEDTFREMLRVKRSVETARSSAVYVADGLLKTDAPLMSDAEA-------ERRMAGDQPAS----KKRSADEGGAAETEMAALERQAARI 860
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S2W251_9STRA (Glycine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.370e-35
Identity = 83/165 (50.30%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:    4 VYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGG-GTG-------AXXXXXKRKAGDAMAALETDLEALERHAEKIRLA 474
            +YE+AI+ L + DA+++ +Q+A +E+ LGEIDRARA+  HGSQF +P+R   +W  WHDFEVAHGNE+TFREMLRVKRSV  +F+   +   +M  +++PV SDAEALA   A+ +  GG G+        A     KRKA +   ALETD+EALER A +I  A
Sbjct:  677 IYEQAIKLLPDVDAQKMAVQYATVEKKLGEIDRARAIFTHGSQFTNPKREPEFWKQWHDFEVAHGNEDTFREMLRVKRSVQTAFANETFY--DMASSELPVQSDAEALAKMQARGQGPGGMGSAGDAAADMAGVAGQKRKAAEG-GALETDMEALERQAARIMAA 838
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A6T8FEN2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8FEN2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.780e-33
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:    1 PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTS-------DAEALA 330
            P+YE AI +L + DA +IC+ +A LE  LGE+DRAR V  +G+Q ADPRR D YW  WH FEV  G+E+TFR+MLR+KR+V+ +FS VNY AAEM   D   TS       DAEA+A
Sbjct:   19 PIYETAISSLDDLDAAKICLSYAALETKLGELDRARTVYTYGAQMADPRRFDGYWKEWHSFEVKRGSEDTFRDMLRIKRAVSAAFSTVNYNAAEMTADDADTTSNQAKSLTDAEAIA 135
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S2S528_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S528_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.630e-32
Identity = 77/159 (48.43%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:    1 PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADVPVTSDAEALATAAAKDKALGGGTGAXXXXXKRKAGDAMAALE---TDLEALERHAEKIR 468
            P+YE+AI AL +  A +IC+++A +E +L E DRARA   +G+Q ADPRR + Y+  WHDFEV++GNEETFREMLR+KRSV  +FS VNY AAEM G+ VP   +AE   TA      +    G      +R +G          TDLE +ER AEK+R
Sbjct:   80 PLYERAIAALEDRPAAQICIEYANMETSLKEYDRARAAFTYGAQMADPRRLEDYYKKWHDFEVSYGNEETFREMLRIKRSVVAAFSTVNYNAAEM-GSAVP---NAETTLTATQALAMIEEREGVQAQAKERISGFVQGKRTSEMTDLEEVERRAEKLR 234
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BLAST of jgi.p|Trimin1|173923 vs. uniprot
Match: A0A7S2LGF2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGF2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.940e-32
Identity = 83/162 (51.23%), Postives = 103/162 (63.58%), Query Frame = 1 
Query:    1 PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEM-MGADVPVT-SDAEALATAAAKD--KALGGGTGAXXXXXKRKAGDAMAALETDLEALERHAEKIRLA 474
            P+YE AI AL + +A +IC+Q+A LE  LGE+ RARA+  +G+Q ADPRR   YW +WH FEV +GNEETFREMLRVKR VA +FS VNY AAEM  G D P T +D EA      ++  KA     G      KRKA +A      +L+ LER A K+R A
Sbjct:  776 PIYEAAIAALEDKEAAQICIQYAGLETDLGELQRARALWVYGAQMADPRRDVDYWKSWHSFEVENGNEETFREMLRVKRGVAAAFSTVNYNAAEMGAGVDEPKTLTDEEAFNMITQREGIKAANTSVGGFVSGTKRKAQEA------NLDTLERQAAKLREA 931
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173923 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMJ5_9STRA4.010e-135100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G3C7_ECTSI8.370e-6056.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V324_9STRA3.980e-4757.23Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XMF3_HETAK1.780e-4352.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AYY7_9STRA9.670e-3847.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4A7Z3_9STRA1.810e-3550.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2W251_9STRA3.370e-3550.30Glycine--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
A0A6T8FEN2_9STRA3.780e-3354.70Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2S528_9STRA2.630e-3248.43Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2LGF2_9STRA2.940e-3251.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:1..1775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173923|e_gw1.107.68.1
BRITEko00000,ko00001,ko00002,ko03019,ko03041
KEGG ModuleM00355
KEGG Pathwayko03040,map03040
KEGG koko:K12867
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
Descriptiongeneration of catalytic spliceosome for first transesterification step
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2047@1|root,KOG2047@2759|Eukaryota
Evalue1.37e-60
Seed ortholog2880.D7G3C7
Hectar predicted targeting categoryother localisation
TranscriptId174245
TrackFilteredModels1
ProteinId173923
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173923gene_11553Tribonema minus UTEX_B_3156 geneContig_107 1..1775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11553_1exon_11553_1Tribonema minus UTEX_B_3156 exonContig_107 1..257 +
exon_11553_2exon_11553_2Tribonema minus UTEX_B_3156 exonContig_107 1220..1775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11553CDS_11553Tribonema minus UTEX_B_3156 CDSContig_107 1..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173923Trimin1|173923|e_gw1.107.68.1Tribonema minus UTEX_B_3156 polypeptideContig_107 1..1775 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11553 ID=mRNA_11553|Name=jgi.p|Trimin1|173923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_107:1..1775+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCGTGTACGAGAAGGCGATCGAGGCGCTGGGCGAGGACGACGCGCGCGA
GATCTGCATGCAGTTCGCGCGCCTCGAGCAGGCGCTCGGCGAGATCGACC
GCGCGCGCGCCGTCCTCGCGCACGGCTCGCAGTTTGCGGACCCGCGTCGC
CACGACTCGTACTGGTCCGCGTGGCACGACTTTGAGGTCGCGCACGGCAA
CGAGGAGACGTTCCGCGAGATGCTGCGCGTCAAGCGCAGCGTCGCCATGT
CCTTCAGCGCCGTTAACTACATGGCGGCGGAGATGATGGGCGCGGACGTG
CCCGTCACCTCGGACGCGGAGGCGCTCGCCACGGCCGCCGCCAAGGACAA
GGCCCTCGGCGGCGGCACGGGCGCGCTCGGCGGCGGCACCAAGCGCAAGG
CCGGCGACGCCATGGCAGCGCTCGAGACGGACCTTGAGGCGCTGGAGCGT
CACGCCGAGAAGATTCGGCTCGCCAAGGCCGCGGGCGCCGCCGCCGCCGC
CGCCGCCAACCCCGAGGAGATCGACCTCGATGAGGACATGGGCGTGGTTG
CGGCGGCGGCGCCGGCGCCGGCAGCGGCGGCGGCAGCAGCGGCGGCGGCT
GCAGCGAACCCCGAGGAAATCGATCTGGATGAAGAGGATGAGGAGGGGGG
CGGGGAGGACGGGGGCGGGGACGTGCGCCTCGTGCAGAAGGCAGTGCCGG
AGGCGGTGTTTGGGAGCGCCAAGGAGGCGCTGGAGAGGGAGCGCGCGGCG
GAGGGGGGGGCGGGGGGCAAGGGCATGGGCGCGCTGGAGCGCATGAAGGC
CAGGAAACGGTGA
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protein sequence of jgi.p|Trimin1|173923

>Trimin1|173923|e_gw1.107.68.1 ID=Trimin1|173923|e_gw1.107.68.1|Name=jgi.p|Trimin1|173923|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
PVYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRR
HDSYWSAWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMMGADV
PVTSDAEALATAAAKDKALGGGTGALGGGTKRKAGDAMAALETDLEALER
HAEKIRLAKAAGAAAAAAANPEEIDLDEDMGVVAAAAPAPAAAAAAAAAA
AANPEEIDLDEEDEEGGGEDGGGDVRLVQKAVPEAVFGSAKEALERERAA
EGGAGGKGMGALERMKARKR*
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mRNA from alignment at Contig_107:1..1775+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11553 ID=mRNA_11553|Name=jgi.p|Trimin1|173923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1775bp|location=Sequence derived from alignment at Contig_107:1..1775+ (Tribonema minus UTEX_B_3156 )
CCCGTGTACGAGAAGGCGATCGAGGCGCTGGGCGAGGACGACGCGCGCGA
GATCTGCATGCAGTTCGCGCGCCTCGAGCAGGCGCTCGGCGAGATCGACC
GCGCGCGCGCCGTCCTCGCGCACGGCTCGCAGTTTGCGGACCCGCGTCGC
CACGACTCGTACTGGTCCGCGTGGCACGACTTTGAGGTCGCGCACGGCAA
CGAGGAGACGTTCCGCGAGATGCTGCGCGTCAAGCGCAGCGTCGCCATGT
CCTTCAGGTGCGTACGGGTGCTTCGTACATGCGTGAATAGTGTGTGTATG
TATATGTATTTATAAGTATTACACGATATACAAGTGCGTGTGTATTGAAG
TAGGGGTGTTTTCAGGGGTCGCGCACGGCAACGAGGAGACGTTGTGCGAG
ATGCTGTGTGTCAAGCGCAGCGTTGCCATGTCCTTCAGGCACGTATGGGT
GCTGTGCACATGCCTGAGTAGGGTGTGTATGTATATATATTCATCGGTGC
GGGTGGTTGTAGGCGTGGCTGTGACATTGGCGAGACGCTCCGCGAGATGC
TGCGCGTCAAGGGCATTGTCGCATGTCCTTCAGATGTGTTTCACTGTATG
TATGCACGTATGTTGTACACAACATGCGCCGGAAGCGTGTTAAGTGTGTT
GATTCAACGCCGACGAGGGCTGCTGGTCATCTCTCATCAGCCTCAATTTG
TACATGTCGAGGTGTGTTCAGCTCGCACGCGTGCGGGCGGTATTATGTGG
GCCGCCCTGCACTGCACCTACATTGGTGCGCTTGGCTCGGGCCAATCAGC
GGCGGCAGCGCGGACGGCAGCGCAGCGCGCAGTGCGAAGCGATGCAACAC
GTGCTGCCACATGCGTTTGCTGCACGTGCCGGACGCAGATGCTGCATCCG
GCAGCCGTTAGTGTTTGCTTACACATGATGCTGAGCCCCCCGCTCTCTTG
CATGCACTTGGCGTACGTGCGCCAGGCACTGTCAACGTCTGCGCCTGGCG
TCTGTGCCTGGCAGCTCTCTGGCACGTTTACATTCCATGTCGATTCTCGC
TGCCCGGTCTCCTGCACGCCTTTCACCTGTTCCTGACCCCCCGTACACGC
ACTTCCATCCATCAAGTACCCCCCCCCCCCCCCCTTTCCCTCAGTGCACA
CTGTATTGACCCCCCCCCCATCCCCCCATCAGAGCACACTGACCGCCCCC
CCTCCCTCCCCTCGAACAGCGCCGTTAACTACATGGCGGCGGAGATGATG
GGCGCGGACGTGCCCGTCACCTCGGACGCGGAGGCGCTCGCCACGGCCGC
CGCCAAGGACAAGGCCCTCGGCGGCGGCACGGGCGCGCTCGGCGGCGGCA
CCAAGCGCAAGGCCGGCGACGCCATGGCAGCGCTCGAGACGGACCTTGAG
GCGCTGGAGCGTCACGCCGAGAAGATTCGGCTCGCCAAGGCCGCGGGCGC
CGCCGCCGCCGCCGCCGCCAACCCCGAGGAGATCGACCTCGATGAGGACA
TGGGCGTGGTTGCGGCGGCGGCGCCGGCGCCGGCAGCGGCGGCGGCAGCA
GCGGCGGCGGCTGCAGCGAACCCCGAGGAAATCGATCTGGATGAAGAGGA
TGAGGAGGGGGGCGGGGAGGACGGGGGCGGGGACGTGCGCCTCGTGCAGA
AGGCAGTGCCGGAGGCGGTGTTTGGGAGCGCCAAGGAGGCGCTGGAGAGG
GAGCGCGCGGCGGAGGGGGGGGCGGGGGGCAAGGGCATGGGCGCGCTGGA
GCGCATGAAGGCCAGGAAACGGTGA
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Coding sequence (CDS) from alignment at Contig_107:1..1775+

>mRNA_11553 ID=mRNA_11553|Name=jgi.p|Trimin1|173923|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_107:1..1775+ (Tribonema minus UTEX_B_3156 )
CCCGTGTACGAGAAGGCGATCGAGGCGCTGGGCGAGGACGACGCGCGCGA
GATCTGCATGCAGTTCGCGCGCCTCGAGCAGGCGCTCGGCGAGATCGACC
GCGCGCGCGCCGTCCTCGCGCACGGCTCGCAGTTTGCGGACCCGCGTCGC
CACGACTCGTACTGGTCCGCGTGGCACGACTTTGAGGTCGCGCACGGCAA
CGAGGAGACGTTCCGCGAGATGCTGCGCGTCAAGCGCAGCGTCGCCATGT
CCTTCAGCGCCGTTAACTACATGGCGGCGGAGATGATGGGCGCGGACGTG
CCCGTCACCTCGGACGCGGAGGCGCTCGCCACGGCCGCCGCCAAGGACAA
GGCCCTCGGCGGCGGCACGGGCGCGCTCGGCGGCGGCACCAAGCGCAAGG
CCGGCGACGCCATGGCAGCGCTCGAGACGGACCTTGAGGCGCTGGAGCGT
CACGCCGAGAAGATTCGGCTCGCCAAGGCCGCGGGCGCCGCCGCCGCCGC
CGCCGCCAACCCCGAGGAGATCGACCTCGATGAGGACATGGGCGTGGTTG
CGGCGGCGGCGCCGGCGCCGGCAGCGGCGGCGGCAGCAGCGGCGGCGGCT
GCAGCGAACCCCGAGGAAATCGATCTGGATGAAGAGGATGAGGAGGGGGG
CGGGGAGGACGGGGGCGGGGACGTGCGCCTCGTGCAGAAGGCAGTGCCGG
AGGCGGTGTTTGGGAGCGCCAAGGAGGCGCTGGAGAGGGAGCGCGCGGCG
GAGGGGGGGGCGGGGGGCAAGGGCATGGGCGCGCTGGAGCGCATGAAGGC
CAGGAAACGGTGA
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