mRNA_11542 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180806
Unique NamemRNA_11542
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.360e-80
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF RLVRE+AQDFK+DLRFQG+A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 240 bits (613), Expect = 8.270e-80
Identity = 127/136 (93.38%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF RLVRE+AQDFK+DLR+QG+A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 240 bits (612), Expect = 9.610e-80
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPF RLVRE+AQDFKSDLRFQG+A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.080e-79
Identity = 127/136 (93.38%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPF RLVRE+AQDFK+DLRFQG+A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: Q76MQ3_DROPS (Histone H3 n=7 Tax=Eukaryota TaxID=2759 RepID=Q76MQ3_DROPS)

HSP 1 Score: 239 bits (610), Expect = 1.940e-79
Identity = 126/136 (92.65%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF RLVRE+AQDFK+DLRFQ +A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 241 bits (616), Expect = 2.710e-79
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPF RLVRE+AQDFKSDLRFQG+A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 238 bits (607), Expect = 5.560e-79
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF RLVRE+AQDFKSDLRFQ +A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 5.560e-79
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTG +APRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF RLVRE+AQDFKSDLRFQG+A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 238 bits (606), Expect = 7.900e-79
Identity = 125/136 (91.91%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF RL+RE+AQDFK+DLRFQ +A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 237 bits (604), Expect = 1.590e-78
Identity = 125/136 (91.91%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARK APATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPF RLVRE+AQDFK+DLRFQ +A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180806 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA2.360e-8094.12Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK8.270e-8093.38Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO9.610e-8093.38Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.080e-7993.38Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
Q76MQ3_DROPS1.940e-7992.65Histone H3 n=7 Tax=Eukaryota TaxID=2759 RepID=Q76M... [more]
K0S7I6_THAOC2.710e-7994.12Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A6J0UZS0_9SAUR5.560e-7992.65Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
D7G4I9_ECTSI5.560e-7993.38Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE7.900e-7991.91Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
E1ZFV1_CHLVA1.590e-7891.91Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:152133..152543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180806|e_gw1.228.14.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
KEGG koko:K11253
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Descriptionprotein heterodimerization activity
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Evalue1.35e-81
Seed ortholog2880.D7FWI7
Hectar predicted targeting categoryother localisation
TranscriptId181128
TrackFilteredModels1
ProteinId180806
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180806gene_11542Tribonema minus UTEX_B_3156 geneContig_228 152133..152543 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11542_1exon_11542_1Tribonema minus UTEX_B_3156 exonContig_228 152133..152543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11542CDS_11542Tribonema minus UTEX_B_3156 CDSContig_228 152133..152543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180806Trimin1|180806|e_gw1.228.14.1Tribonema minus UTEX_B_3156 polypeptideContig_228 152133..152543 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11542 ID=mRNA_11542|Name=jgi.p|Trimin1|180806|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_228:152133..152543+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCACGAAGCAAACGGCACGTAAGTCCACAGGTGGCAAGGCACC
CCGCAAGCAGCTGGCGACCAAAGCTGCACGAAAAGGCGCACCCGCCACCG
GCGGTGTGAAGAAGCCTCACCGATACCGTCCTGGAACAGTCGCCCTACGC
GAGATAAGGAGATACCAGAAGAGCACAGAGCTGCTCATCCGCAAGCTACC
TTTCTCGCGGCTAGTACGGGAGGTCGCACAGGATTTCAAGTCAGACCTTA
GATTTCAGGGCAACGCGATTTTCGCTCTGCAGGAGGCGGCGGAAGCGTAC
CTCGTCGGTCTGTTCGAGGATACTAACCTGTGCGCCATCCATGCCAAGCG
CGTAACCATAATGCCCAAGGATGTCCAGCTCGCCCGTAGAATCAGAGGCG
AGAGATCGTGA
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protein sequence of jgi.p|Trimin1|180806

>Trimin1|180806|e_gw1.228.14.1 ID=Trimin1|180806|e_gw1.228.14.1|Name=jgi.p|Trimin1|180806|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKGAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFSRLVREVAQDFKSDLRFQGNAIFALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERS*
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mRNA from alignment at Contig_228:152133..152543+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11542 ID=mRNA_11542|Name=jgi.p|Trimin1|180806|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_228:152133..152543+ (Tribonema minus UTEX_B_3156 )
ATGGCTCGCACGAAGCAAACGGCACGTAAGTCCACAGGTGGCAAGGCACC
CCGCAAGCAGCTGGCGACCAAAGCTGCACGAAAAGGCGCACCCGCCACCG
GCGGTGTGAAGAAGCCTCACCGATACCGTCCTGGAACAGTCGCCCTACGC
GAGATAAGGAGATACCAGAAGAGCACAGAGCTGCTCATCCGCAAGCTACC
TTTCTCGCGGCTAGTACGGGAGGTCGCACAGGATTTCAAGTCAGACCTTA
GATTTCAGGGCAACGCGATTTTCGCTCTGCAGGAGGCGGCGGAAGCGTAC
CTCGTCGGTCTGTTCGAGGATACTAACCTGTGCGCCATCCATGCCAAGCG
CGTAACCATAATGCCCAAGGATGTCCAGCTCGCCCGTAGAATCAGAGGCG
AGAGATCGTGA
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Coding sequence (CDS) from alignment at Contig_228:152133..152543+

>mRNA_11542 ID=mRNA_11542|Name=jgi.p|Trimin1|180806|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_228:152133..152543+ (Tribonema minus UTEX_B_3156 )
ATGGCTCGCACGAAGCAAACGGCACGTAAGTCCACAGGTGGCAAGGCACC
CCGCAAGCAGCTGGCGACCAAAGCTGCACGAAAAGGCGCACCCGCCACCG
GCGGTGTGAAGAAGCCTCACCGATACCGTCCTGGAACAGTCGCCCTACGC
GAGATAAGGAGATACCAGAAGAGCACAGAGCTGCTCATCCGCAAGCTACC
TTTCTCGCGGCTAGTACGGGAGGTCGCACAGGATTTCAAGTCAGACCTTA
GATTTCAGGGCAACGCGATTTTCGCTCTGCAGGAGGCGGCGGAAGCGTAC
CTCGTCGGTCTGTTCGAGGATACTAACCTGTGCGCCATCCATGCCAAGCG
CGTAACCATAATGCCCAAGGATGTCCAGCTCGCCCGTAGAATCAGAGGCG
AGAGATCGTGA
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