mRNA_11535 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151923
Unique NamemRNA_11535
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151923 vs. uniprot
Match: A0A835Z4G1_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.870e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 EGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSMM 153
            EGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSMM
Sbjct:   29 EGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSMM 79
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151923 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z4G1_9STRA4.870e-24100.00Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:139196..139537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151923|gw1.228.35.1
Descriptionspectrin binding
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Evalue0.000469
Seed ortholog7425.NV24923-PA
Hectar predicted targeting categoryother localisation
TranscriptId152245
TrackFilteredModels1
ProteinId151923
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151923gene_11535Tribonema minus UTEX_B_3156 geneContig_228 139196..139537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11535_1exon_11535_1Tribonema minus UTEX_B_3156 exonContig_228 139196..139537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11535CDS_11535Tribonema minus UTEX_B_3156 CDSContig_228 139196..139537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151923Trimin1|151923|gw1.228.35.1Tribonema minus UTEX_B_3156 polypeptideContig_228 139196..139537 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11535 ID=mRNA_11535|Name=jgi.p|Trimin1|151923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_228:139196..139537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAGGCCTTACCGCGCTACACATTGCGGCGCGGTCTCGGTCGGTGCCCTG
CGCAACGCTATTGCTTGCCGTTGGTGCGTCCGTGGACGACACAGACGCTG
CAGGCGAGACGCCTCTCTTCAATGCCGTGAAAAACGGGGATCGCTCCATG
ATGTCTCTGCTTCTCGACAATGGAGCGGATGTTGACGCCAGAAACGCAGC
AGGAAGCAGCATTATGCATCTCGCAGCGCACCACCACTGCGCACTGCTCC
TCTCCGCACTCATTTCAAGATCACCCGACATGAGAACGGTCGACTCTGCA
GGCAACACGGCCCTGCACATCGCTGCTGCATCTGCCAACCTC
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protein sequence of jgi.p|Trimin1|151923

>Trimin1|151923|gw1.228.35.1 ID=Trimin1|151923|gw1.228.35.1|Name=jgi.p|Trimin1|151923|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
EGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSM
MSLLLDNGADVDARNAAGSSIMHLAAHHHCALLLSALISRSPDMRTVDSA
GNTALHIAAASANL
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mRNA from alignment at Contig_228:139196..139537-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11535 ID=mRNA_11535|Name=jgi.p|Trimin1|151923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_228:139196..139537- (Tribonema minus UTEX_B_3156 )
GAAGGCCTTACCGCGCTACACATTGCGGCGCGGTCTCGGTCGGTGCCCTG
CGCAACGCTATTGCTTGCCGTTGGTGCGTCCGTGGACGACACAGACGCTG
CAGGCGAGACGCCTCTCTTCAATGCCGTGAAAAACGGGGATCGCTCCATG
ATGTCTCTGCTTCTCGACAATGGAGCGGATGTTGACGCCAGAAACGCAGC
AGGAAGCAGCATTATGCATCTCGCAGCGCACCACCACTGCGCACTGCTCC
TCTCCGCACTCATTTCAAGATCACCCGACATGAGAACGGTCGACTCTGCA
GGCAACACGGCCCTGCACATCGCTGCTGCATCTGCCAACCTC
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Coding sequence (CDS) from alignment at Contig_228:139196..139537-

>mRNA_11535 ID=mRNA_11535|Name=jgi.p|Trimin1|151923|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_228:139196..139537- (Tribonema minus UTEX_B_3156 )
GAAGGCCTTACCGCGCTACACATTGCGGCGCGGTCTCGGTCGGTGCCCTG
CGCAACGCTATTGCTTGCCGTTGGTGCGTCCGTGGACGACACAGACGCTG
CAGGCGAGACGCCTCTCTTCAATGCCGTGAAAAACGGGGATCGCTCCATG
ATGTCTCTGCTTCTCGACAATGGAGCGGATGTTGACGCCAGAAACGCAGC
AGGAAGCAGCATTATGCATCTCGCAGCGCACCACCACTGCGCACTGCTCC
TCTCCGCACTCATTTCAAGATCACCCGACATGAGAACGGTCGACTCTGCA
GGCAACACGGCCCTGCACATCGCTGCTGCATCTGCCAACCTC
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