mRNA_11531 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180828
Unique NamemRNA_11531
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180828 vs. uniprot
Match: A0A835YW40_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW40_9STRA)

HSP 1 Score: 350 bits (897), Expect = 5.790e-122
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1 
Query:    1 MFVAITSTTLTQENEHMVADSLAWFNSDRQMAELLLGIIASPRTGPSLRLMDHLVGHYSKEVPVSVPGRGGVPVDLCMEYKRELQASSKKYLDAFKRHMPVEAVVLGRAVRTTLGQLRFIAWFQKLGLHEYLRDNEQAIKQHMNDKMKGTRTALAVCPKRSEAALHRGNFVMEF 522
            MFVAITSTTLTQENEHMVADSLAWFNSDRQMAELLLGIIASPRTGPSLRLMDHLVGHYSKEVPVSVPGRGGVPVDLCMEYKRELQASSKKYLDAFKRHMPVEAVVLGRAVRTTLGQLRFIAWFQKLGLHEYLRDNEQAIKQHMNDKMKGTRTALAVCPKRSEAALHRGNFVMEF
Sbjct:    1 MFVAITSTTLTQENEHMVADSLAWFNSDRQMAELLLGIIASPRTGPSLRLMDHLVGHYSKEVPVSVPGRGGVPVDLCMEYKRELQASSKKYLDAFKRHMPVEAVVLGRAVRTTLGQLRFIAWFQKLGLHEYLRDNEQAIKQHMNDKMKGTRTALAVCPKRSEAALHRGNFVMEF 174
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BLAST of jgi.p|Trimin1|180828 vs. uniprot
Match: A0A835Z129_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z129_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.380e-53
Identity = 99/194 (51.03%), Postives = 122/194 (62.89%), Query Frame = 1 
Query:    1 MFVAITSTTLTQENEHMVADSLAWFNS--DRQMAELLLGIIASPRTGPSLRLMDHLVGHYSKEVPVSVPGRGGVPVDLCMEYKRELQASSKKYLDAFKRHMPVEAVVLGRAVRTTLGQLRFIAWFQKLGLHEYLRDNEQAIKQHMNDKMKGTRTALAV------------------CPKRSEAALHRGNFVMEF 522
            M VAI ST L+ E+ HMV ++L WFN   DR  AE L  +I SPRTGPSLRLMDHL  HYS+   V+V GR GVPVDL  EY+R LQAS K+Y DAFKR +PV+A VLG+ V TTLGQLRF+AWFQKLG+H+YL  +   ++ HM   +   R+  A+                  C   ++ ALH G F M F
Sbjct:   58 MDVAIVST-LSPESAHMVTEALRWFNDPDDRTRAEALRSVIGSPRTGPSLRLMDHLAVHYSRARGVAVRGRDGVPVDLWTEYRRALQASGKRYFDAFKRFLPVKARVLGQEVETTLGQLRFLAWFQKLGMHDYLLQHSGEVRAHMQAMLTAARSEDAIAGRTTRKRGSRGDSERGDCTAATKPALHLGQFEMSF 250
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BLAST of jgi.p|Trimin1|180828 vs. uniprot
Match: A0A6C0LN17_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LN17_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 1.420e-7
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:  139 SLRLMDHLVGHYSKEVPVSVPGRGGVPVDLCMEYKRELQASSKKYLDAFKRHMPVEAVVLGRA-VRTTLGQLRFIAWFQKLGLHEYLRDNEQAIKQHMNDKMK 444
            SLRL+D+ V +Y+K++  S        + +   YKREL A SK+  D F R   ++    G+    TT+GQL F  WF +  +++Y+  N ++I++ MN+ +K
Sbjct:   66 SLRLVDYFVTNYAKKMNTSFTKENRHFL-VYFNYKRELNAYSKRLFDPFCRRERIQFEARGQTPFVTTVGQLNFFRWFIEKEIYDYVLANRESIEKDMNNTLK 167
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180828 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YW40_9STRA5.790e-122100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z129_9STRA2.380e-5351.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0LN17_9ZZZZ1.420e-733.98Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:133921..134445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180828|e_gw1.228.54.1
BRITEko00000,ko00001,ko00536,ko04516
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
KEGG koko:K06236
Descriptionstructural constituent of cuticle
COG categoryD
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Evalue5.36e-16
Seed ortholog2880.D8LPG7
Hectar predicted targeting categoryother localisation
TranscriptId181150
TrackFilteredModels1
ProteinId180828
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180828gene_11531Tribonema minus UTEX_B_3156 geneContig_228 133921..134445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11531_1exon_11531_1Tribonema minus UTEX_B_3156 exonContig_228 133921..134445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11531CDS_11531Tribonema minus UTEX_B_3156 CDSContig_228 133921..134445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180828Trimin1|180828|e_gw1.228.54.1Tribonema minus UTEX_B_3156 polypeptideContig_228 133921..134445 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11531 ID=mRNA_11531|Name=jgi.p|Trimin1|180828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_228:133921..134445- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTCGCCATCACGTCCACTACGCTCACTCAGGAAAATGAGCACAT
GGTGGCGGATTCGCTGGCCTGGTTCAACAGCGATCGACAGATGGCGGAGC
TGCTGCTGGGCATCATCGCCTCGCCGCGCACGGGGCCGAGCCTCAGGCTC
ATGGACCACCTCGTAGGACACTACAGCAAGGAGGTTCCGGTGAGCGTGCC
CGGGCGGGGAGGCGTGCCCGTCGACCTGTGCATGGAATACAAGCGCGAGT
TGCAAGCCTCCAGCAAGAAGTATCTGGACGCTTTCAAGCGACACATGCCT
GTGGAGGCAGTGGTGCTGGGAAGGGCGGTGCGCACGACGCTGGGACAGTT
GCGATTCATCGCTTGGTTTCAGAAGCTCGGGCTGCACGAGTACCTCCGAG
ACAACGAGCAGGCTATCAAACAGCACATGAATGATAAGATGAAAGGAACC
CGGACGGCGCTGGCTGTATGTCCAAAGCGAAGTGAGGCAGCTCTACACAG
GGGCAACTTTGTAATGGAATTTTGA
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protein sequence of jgi.p|Trimin1|180828

>Trimin1|180828|e_gw1.228.54.1 ID=Trimin1|180828|e_gw1.228.54.1|Name=jgi.p|Trimin1|180828|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MFVAITSTTLTQENEHMVADSLAWFNSDRQMAELLLGIIASPRTGPSLRL
MDHLVGHYSKEVPVSVPGRGGVPVDLCMEYKRELQASSKKYLDAFKRHMP
VEAVVLGRAVRTTLGQLRFIAWFQKLGLHEYLRDNEQAIKQHMNDKMKGT
RTALAVCPKRSEAALHRGNFVMEF*
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mRNA from alignment at Contig_228:133921..134445-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11531 ID=mRNA_11531|Name=jgi.p|Trimin1|180828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_228:133921..134445- (Tribonema minus UTEX_B_3156 )
ATGTTTGTCGCCATCACGTCCACTACGCTCACTCAGGAAAATGAGCACAT
GGTGGCGGATTCGCTGGCCTGGTTCAACAGCGATCGACAGATGGCGGAGC
TGCTGCTGGGCATCATCGCCTCGCCGCGCACGGGGCCGAGCCTCAGGCTC
ATGGACCACCTCGTAGGACACTACAGCAAGGAGGTTCCGGTGAGCGTGCC
CGGGCGGGGAGGCGTGCCCGTCGACCTGTGCATGGAATACAAGCGCGAGT
TGCAAGCCTCCAGCAAGAAGTATCTGGACGCTTTCAAGCGACACATGCCT
GTGGAGGCAGTGGTGCTGGGAAGGGCGGTGCGCACGACGCTGGGACAGTT
GCGATTCATCGCTTGGTTTCAGAAGCTCGGGCTGCACGAGTACCTCCGAG
ACAACGAGCAGGCTATCAAACAGCACATGAATGATAAGATGAAAGGAACC
CGGACGGCGCTGGCTGTATGTCCAAAGCGAAGTGAGGCAGCTCTACACAG
GGGCAACTTTGTAATGGAATTTTGA
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Coding sequence (CDS) from alignment at Contig_228:133921..134445-

>mRNA_11531 ID=mRNA_11531|Name=jgi.p|Trimin1|180828|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_228:133921..134445- (Tribonema minus UTEX_B_3156 )
ATGTTTGTCGCCATCACGTCCACTACGCTCACTCAGGAAAATGAGCACAT
GGTGGCGGATTCGCTGGCCTGGTTCAACAGCGATCGACAGATGGCGGAGC
TGCTGCTGGGCATCATCGCCTCGCCGCGCACGGGGCCGAGCCTCAGGCTC
ATGGACCACCTCGTAGGACACTACAGCAAGGAGGTTCCGGTGAGCGTGCC
CGGGCGGGGAGGCGTGCCCGTCGACCTGTGCATGGAATACAAGCGCGAGT
TGCAAGCCTCCAGCAAGAAGTATCTGGACGCTTTCAAGCGACACATGCCT
GTGGAGGCAGTGGTGCTGGGAAGGGCGGTGCGCACGACGCTGGGACAGTT
GCGATTCATCGCTTGGTTTCAGAAGCTCGGGCTGCACGAGTACCTCCGAG
ACAACGAGCAGGCTATCAAACAGCACATGAATGATAAGATGAAAGGAACC
CGGACGGCGCTGGCTGTATGTCCAAAGCGAAGTGAGGCAGCTCTACACAG
GGGCAACTTTGTAATGGAATTTTGA
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