mRNA_11526 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150083
Unique NamemRNA_11526
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A835Z4V7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V7_9STRA)

HSP 1 Score: 257 bits (656), Expect = 9.190e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESLRHPNIVALYCASPRMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 381
            IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESLRHPNIVALYCASPRMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI
Sbjct:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESLRHPNIVALYCASPRMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 127          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A835YY42_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY42_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.380e-82
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESLRHPNIVALYCASPRMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 381
            IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHE LRHPNIVALYCASPRMLIMELMRGSLSDFIRGSPEPTS+TKWKMVADVLRAV+YLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI
Sbjct:   37 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHERLRHPNIVALYCASPRMLIMELMRGSLSDFIRGSPEPTSSTKWKMVADVLRAVHYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 163          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A6A3LD09_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LD09_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.300e-12
Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 1
Query:    4 GAGSQGQVYEATWLGAPVA-----VKVTWDDGTAEAEAAAHESLRHPNIVALYCA----SPRMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFG 369
            G+G   +VY  TW  APV      +K+  D  T   E      LRHP+IV L+ A     P  +      G LSD++R +P+      W  + +    + YL     +HGDIK +N++VGHD   KL DFG
Sbjct:  435 GSGGFAKVYHGTWRQAPVVLRRVRIKIENDLSTFLNEVKIWHKLRHPHIVQLFGACHIGQPFFVCEYAAGGELSDYLRVNPDEV----WNKLYEAALGLQYLHDKQVMHGDIKGNNILVGHDGSAKLSDFG 561          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: E4WR01_OIKDI (Tyrosine-protein kinase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WR01_OIKDI)

HSP 1 Score: 67.8 bits (164), Expect = 1.080e-10
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLG-APVAVKV----TWDDGTAEAEAAAHESLRHPNIVALYC---ASPRMLIMELM-RGSLSDFI--RGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 381
            +G+G  G+V++  W G   VAVK     + D    + EA   ++LRHP +V+L+    A P M+I E+M  GSL  ++  R     T      M   V + + Y++    +H D++ DN++VG + ++K+GDFG  R+
Sbjct:  244 LGSGMFGEVWKGIWNGRVDVAVKKMKPGSMDPEAFKDEATVMKTLRHPRLVSLFAVCSAEPLMIITEIMTNGSLLTYLKDRAGKHATLPQLIDMGTMVAQGMAYIERMNYIHRDVRADNMLVGQNGIVKVGDFGLARL 381          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A7S3HN74_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HN74_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-10
Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESL--------RHPNIVALYCASPRM--LIMELMR-GSL-------SDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 381
            IG G+ G VY   W    VAVKV +      AE AA E           HPN+V L   S  M   +MEL+  GSL       +D    +   TS TK K++  VL  +  L H G VHGD+K  NV++ HD + K+ DFG  R+
Sbjct:  345 IGRGAFGLVYRGVWQTQKVAVKVLFLTQLQRAEKAAFEKELIILGHLGTHPNLVQLLGYSIEMPAFVMELVALGSLHHSLYFNNDETVTAALSTSATKKKILIGVLSGLVQLHHVGIVHGDLKPHNVLLTHDFVAKITDFGLSRL 489          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A497NIE2_9ARCH (Protein kinase domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497NIE2_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 2.050e-10
Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   25 VYEATWLGAPVAVKVTWDDGTAEAEAAAHESL----------RHPNIVALYCASPRML---IMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 381
            VYEATW G  VAVKV   D     +    E L           HPNIV +Y    + +   IME  + SL D I+  P P+  T  K++  +L A+ Y  H G VH DIK +N+++ +D   KL D+G  +I
Sbjct:   25 VYEATWNGRKVAVKVPRIDPKKTLKKEELEPLLREIEVWKGWNHPNIVKIYQTREKPIPHIIMEYCQKSLRDLIQKGPIPSEKTI-KIITKILDALEYAHHYGVVHRDIKPENILICNDEP-KLTDWGIAKI 154          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A250WW14_9CHLO (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW14_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 2.170e-10
Identity = 44/143 (30.77%), Postives = 69/143 (48.25%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESLR----------HPNIVALY---CASPRMLIM-ELMRGSLSDFI---RGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFGSCR 378
            +G+G+ G VY+ T+ G  VA+KV      AE +    ES++          HPN+V +Y     +P + ++ ELM G L+  +    G P  T      +  D+LR + YL     +H D+K  N+++      KL DFG  R
Sbjct:  743 LGSGAAGVVYQGTYRGRDVAIKVVIPTSAAEVQTEDIESMQFELLIMSRLSHPNVVRVYGGCIQTPNLFVVSELMSGDLTSMLYRREGQPPLTLQESLHIAIDILRGLAYLHDLDIIHRDLKPGNILMDQQGNAKLSDFGLAR 885          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A1Q3W7B7_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Candidatus Amoebophilus sp. 36-38 TaxID=1895716 RepID=A0A1Q3W7B7_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 4.200e-10
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAA-AHESL-----RHPNIVAL--YCASPRMLIMELMRG-SLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFG 369
            +G+G  G VY+AT+ G  VAVK+  +    EA AA  +E++     RH NI+A   +  S   L+ME M G SL D ++ S +     ++++  DV   ++YL   G VH D+K +N+++  +   K+ DFG
Sbjct:  525 LGSGGAGTVYQATYQGRLVAVKLLKNALYKEAVAAFQNEAMIMANHRHNNIIAFRGFLPSKSALVMEYMPGGSLWDLLKSSQDIPWQERYRIALDVSEGMSYLHDCGVVHADLKSENILLDGNRRAKITDFG 656          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A7W1RXW3_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1RXW3_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 4.730e-10
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    1 IGAGSQGQVYEATW--LGAPVAVKVTWDDGTAE--------AEAAAHESLRHPNIVALY--CASP--RMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAVHGDIKVDNVMVGHDALLKLGDFG 369
            +G G  G VY      L  PVAVK+  ++   E         EA     L HPN+V ++  C +    +LIMELMR S++D ++G+          M++D+ +A++Y +    VH D+K DN++V  +   KL D G
Sbjct:  122 LGRGRYGVVYRGLQVALNRPVAVKLLAEEYEKEPEKVQSFLTEARRAGRLNHPNLVQVHDVCEAEGRHLLIMELMRASMADHLKGNGPVPEDQALAMLSDIAKALSYAESQRLVHRDVKPDNILVNDEGSYKLADLG 258          
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Match: A0A2P4X6K7_9STRA (TKL protein kinase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6K7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.880e-10
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    1 IGAGSQGQVYEATWLGAPVAVKVTWDDGTA-------EAEAAAHESLRHPNIVALY--CASP--RMLIMELM-RGSLSDFIRGSPEP-TSTTKWKMVADVLRAVNYLDH--AGAVHGDIKVDNVMVGHDALLKLGDFGSCRI 381
            IG G+ G+VY A+W G  VAVKV      +       E E      L HPNI  L   C +P  R L++EL+ +GSL   +R      T   + + V D  R ++YL H     +H D+K  N++V HD  +K+ DFG  R+
Sbjct:   10 IGEGAFGKVYNASWKGRNVAVKVLIRQNLSADVVREFETEVKIMSFLHHPNICMLLGACLAPESRALVIELVEQGSLWAVLRTRRRQLTDEMRARFVLDTARGMSYLHHFELPILHRDMKSPNLLVEHDYSIKISDFGLSRV 151          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150083 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4V7_9STRA9.190e-87100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YY42_9STRA2.380e-8297.64Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6A3LD09_9STRA5.300e-1235.11Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
E4WR01_OIKDI1.080e-1032.61Tyrosine-protein kinase n=1 Tax=Oikopleura dioica ... [more]
A0A7S3HN74_9STRA1.110e-1037.93Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A497NIE2_9ARCH2.050e-1037.12Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A250WW14_9CHLO2.170e-1030.77Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A1Q3W7B7_9BACT4.200e-1034.85Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7W1RXW3_9BACT4.730e-1032.85Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2P4X6K7_9STRA4.880e-1035.92TKL protein kinase n=1 Tax=Phytophthora palmivora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:119470..119850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150083|gw1.228.19.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04016,map04016
KEGG koko:K20604
EC2.7.12.2
GOsGO:0000003,GO:0000165,GO:0000187,GO:0001932,GO:0001934,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004708,GO:0004712,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006521,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0009605,GO:0009607,GO:0009626,GO:0009791,GO:0009814,GO:0009838,GO:0009889,GO:0009891,GO:0009893,GO:0009908,GO:0009966,GO:0009967,GO:0009987,GO:0010227,GO:0010229,GO:0010364,GO:0010365,GO:0010562,GO:0010565,GO:0010604,GO:0010646,GO:0010647,GO:0010817,GO:0012501,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031335,GO:0031337,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0033238,GO:0033240,GO:0033554,GO:0033674,GO:0034050,GO:0035556,GO:0036211,GO:0042325,GO:0042327,GO:0042762,GO:0043085,GO:0043170,GO:0043207,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045087,GO:0045764,GO:0045859,GO:0045860,GO:0045937,GO:0046885,GO:0046886,GO:0048367,GO:0048437,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051176,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060255,GO:0061458,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090567,GO:0098542,GO:0099402,GO:0140096,GO:1900908,GO:1900910,GO:1900911,GO:1900913,GO:1901564,GO:1902531,GO:1902533
DescriptionProtein kinase domain
COG categoryT
Max annot lvl35493|Streptophyta
EggNOG OGsKOG0581@1|root,KOG0581@2759|Eukaryota,37T77@33090|Viridiplantae,3GGP6@35493|Streptophyta,3KZCD@4447|Liliopsida,3I74C@38820|Poales
Evalue1.72e-13
Seed ortholog4537.OPUNC02G26420.1
Hectar predicted targeting categoryother localisation
TranscriptId150405
TrackFilteredModels1
ProteinId150083
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150083gene_11526Tribonema minus UTEX_B_3156 geneContig_228 119470..119850 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11526_1exon_11526_1Tribonema minus UTEX_B_3156 exonContig_228 119470..119850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11526CDS_11526Tribonema minus UTEX_B_3156 CDSContig_228 119470..119850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150083Trimin1|150083|gw1.228.19.1Tribonema minus UTEX_B_3156 polypeptideContig_228 119470..119850 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11526 ID=mRNA_11526|Name=jgi.p|Trimin1|150083|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_228:119470..119850+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGGAGCCGGCTCGCAGGGGCAGGTGTATGAGGCGACATGGCTCGGTGC
CCCTGTTGCCGTAAAAGTCACATGGGATGACGGGACTGCAGAGGCAGAGG
CGGCTGCGCATGAGAGCCTGCGACATCCCAACATTGTGGCGCTATACTGT
GCCAGTCCGAGGATGCTGATCATGGAACTCATGCGCGGGTCGCTTTCCGA
CTTCATTCGAGGCAGCCCCGAGCCGACTTCGACAACGAAATGGAAAATGG
TCGCCGATGTCTTGAGAGCGGTGAACTACCTTGACCACGCTGGTGCTGTG
CACGGGGATATCAAGGTCGATAATGTTATGGTTGGCCACGATGCTCTACT
GAAGCTTGGGGACTTTGGCTCGTGTCGCATC
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protein sequence of jgi.p|Trimin1|150083

>Trimin1|150083|gw1.228.19.1 ID=Trimin1|150083|gw1.228.19.1|Name=jgi.p|Trimin1|150083|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
IGAGSQGQVYEATWLGAPVAVKVTWDDGTAEAEAAAHESLRHPNIVALYC
ASPRMLIMELMRGSLSDFIRGSPEPTSTTKWKMVADVLRAVNYLDHAGAV
HGDIKVDNVMVGHDALLKLGDFGSCRI
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mRNA from alignment at Contig_228:119470..119850+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11526 ID=mRNA_11526|Name=jgi.p|Trimin1|150083|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_228:119470..119850+ (Tribonema minus UTEX_B_3156 )
ATCGGAGCCGGCTCGCAGGGGCAGGTGTATGAGGCGACATGGCTCGGTGC CCCTGTTGCCGTAAAAGTCACATGGGATGACGGGACTGCAGAGGCAGAGG CGGCTGCGCATGAGAGCCTGCGACATCCCAACATTGTGGCGCTATACTGT GCCAGTCCGAGGATGCTGATCATGGAACTCATGCGCGGGTCGCTTTCCGA CTTCATTCGAGGCAGCCCCGAGCCGACTTCGACAACGAAATGGAAAATGG TCGCCGATGTCTTGAGAGCGGTGAACTACCTTGACCACGCTGGTGCTGTG CACGGGGATATCAAGGTCGATAATGTTATGGTTGGCCACGATGCTCTACT GAAGCTTGGGGACTTTGGCTCGTGTCGCATC
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Coding sequence (CDS) from alignment at Contig_228:119470..119850+

>mRNA_11526 ID=mRNA_11526|Name=jgi.p|Trimin1|150083|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_228:119470..119850+ (Tribonema minus UTEX_B_3156 )
ATCGGAGCCGGCTCGCAGGGGCAGGTGTATGAGGCGACATGGCTCGGTGC
CCCTGTTGCCGTAAAAGTCACATGGGATGACGGGACTGCAGAGGCAGAGG
CGGCTGCGCATGAGAGCCTGCGACATCCCAACATTGTGGCGCTATACTGT
GCCAGTCCGAGGATGCTGATCATGGAACTCATGCGCGGGTCGCTTTCCGA
CTTCATTCGAGGCAGCCCCGAGCCGACTTCGACAACGAAATGGAAAATGG
TCGCCGATGTCTTGAGAGCGGTGAACTACCTTGACCACGCTGGTGCTGTG
CACGGGGATATCAAGGTCGATAATGTTATGGTTGGCCACGATGCTCTACT
GAAGCTTGGGGACTTTGGCTCGTGTCGCATC
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