mRNA_11521 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180817
Unique NamemRNA_11521
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: A0A835YWG9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG9_9STRA)

HSP 1 Score: 360 bits (925), Expect = 1.320e-125
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 1
Query:    1 MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLRCHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYILEHAGYAVVDVDDSHDTRMVTAWRTVGAPIKVTVAVQAQKKGSALWVFELLSTILQLFAAVMWTLVILELIKLI 579
            MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVD+FLRCHADAQSLPFEDACFDLVNLAY+VNEIPVDAA+ IMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYILEHAGYAVV+VDDSHDTRMVTAWRTVGAPIKV VAVQAQKKG ALW FELLSTILQLFAAVMWTLVILELIKLI
Sbjct:    1 MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDIFLRCHADAQSLPFEDACFDLVNLAYIVNEIPVDAAALIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYILEHAGYAVVNVDDSHDTRMVTAWRTVGAPIKVQVAVQAQKKGGALWAFELLSTILQLFAAVMWTLVILELIKLI 193          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: A0A835Z4S2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.240e-29
Identity = 73/207 (35.27%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVD--VFLRCHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRK-----AKSGFTAKDLKYILEHAGYAVVD--VDDSHDTRMVTAWRTVGAPIKVTVAVQAQ-----KKGSALWV--FELLSTILQLFAAVMWTLVILELIK 573
            M + P ++LDV  G G ST  +  ++  A VT +D + +S+A +++D       H +  ++PF DA FD+VNL +V++   +      + E  RV RH GVI +LD        +  +    +K+ILEHAG+A V+  VD    T M+TAWRTVG PI V +AV  +     KK + L +  FE+++ ++Q   A  W+ VI++L++
Sbjct:    1 MRTTPAEILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYAVDHIKFILEHAGFACVEWAVDQIPGTAMITAWRTVGTPIPVKLAVPHKYFARAKKANLLGMSPFEVVAFVIQFVLAYAWSQVIMDLLR 207          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: A0A8J7YZY7_9CYAN (Methyltransferase domain-containing protein n=1 Tax=Myxacorys almedinensis A TaxID=2690445 RepID=A0A8J7YZY7_9CYAN)

HSP 1 Score: 73.2 bits (178), Expect = 5.240e-12
Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 1
Query:    1 MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLRC----------HADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            ++  P D++D+G  +G ST  L R+FP A+VT VD+  + LA +      R           HA A+S     A FDLV+ + V +E+P  AA  I+ E  R+ R  G +A++D    S   AK   YIL
Sbjct:  133 LSEAPNDIVDLGCSVGMSTFALQRTFPNAKVTGVDLSPYFLAVAHYRTQRRTETEFSDPTWVHAAAESTGLPSAAFDLVSASLVFHELPRQAAIAILQEAKRLLRPGGHLAIMDMNPTSEIYAKMPPYIL 262          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: A0A1Z4QK45_9NOST (Type 11 methyltransferase n=1 Tax=Cylindrospermum sp. NIES-4074 TaxID=2005457 RepID=A0A1Z4QK45_9NOST)

HSP 1 Score: 68.9 bits (167), Expect = 1.690e-10
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   13 PYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLR------CHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYI 357
            P D+LD+  G+G ST  L  ++P+A++T +D+  + LA +              HA A+S    DA FDLV++  + +E+P   A  I AE  R+ R  G +A++D   KS    K   YI
Sbjct:  137 PQDILDLACGVGLSTFALQATYPQAKITGLDLSPYFLAVAQYRAQQHQAKINWVHATAESTGLADASFDLVSIFLLFHELPQSVAHQIFAEIRRLLRPGGHLAIMDMNPKSEIYKKMPPYI 257          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: D8FY96_9CYAN (Methyltransf_11 domain-containing protein n=1 Tax=Kamptonema sp. PCC 6506 TaxID=272129 RepID=D8FY96_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 3.180e-10
Identity = 40/122 (32.79%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   13 PYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLR------CHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            P D+LD+G  +G S+  +  ++P+A++T VD+  + LA +      +       HA  +S     A FDLV++  V +E+P  A   I  E  R+ R  G +AM+D   +S   AK   YIL
Sbjct:  137 PLDILDLGCSVGMSSFAMQNTYPQAKITGVDLSPYFLAVAQYQSQQQNRRINWVHAAGESTGLPSASFDLVSIFLVCHELPQAATMQIFREAKRLLRPNGYLAMMDMNPQSEIYAKMPPYIL 258          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: UPI00168543BE (class I SAM-dependent methyltransferase n=9 Tax=Coleofasciculus TaxID=669368 RepID=UPI00168543BE)

HSP 1 Score: 68.2 bits (165), Expect = 3.200e-10
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   13 PYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLR------CHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            P D+LD+G  +G ST  L  ++P+A++T +D+  + LA +      R       H  A+S    DA FDLV++  + +E+P  A   I  E  RV R  G +A++D   +S    K   YIL
Sbjct:  137 PQDILDLGCSVGMSTFALQDTYPQAKLTGLDLSPYFLAVAQYQSQQRQKPISWVHTAAESTGLPDASFDLVSIFLMCHELPQSATMQIFREVRRVLRPGGCLAIMDMNPQSEIYTKMPPYIL 258          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: A0A8J7BSL3_9CYAN (Class I SAM-dependent methyltransferase n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J7BSL3_9CYAN)

HSP 1 Score: 67.4 bits (163), Expect = 6.290e-10
Identity = 42/122 (34.43%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   13 PYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLR------CHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            P D+LD+G  +G ST  L  ++P+ARVT +++  + L  +      R       HA A+      A FDLV+   V +E+P  AA  I  E  R+ R  G   ++D   KS   AK   YIL
Sbjct:  146 PKDILDLGCSVGMSTFALQETYPQARVTGLELSPYFLTVARYKAQKRQLQINWVHAKAEETGLPTASFDLVSACLVFHELPQSAAIAIFQEVRRILRPGGHFTIMDMNPKSEIYAKMPPYIL 267          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: UPI0016803599 (class I SAM-dependent methyltransferase n=1 Tax=Pseudanabaena sp. FACHB-723 TaxID=2692860 RepID=UPI0016803599)

HSP 1 Score: 67.4 bits (163), Expect = 6.330e-10
Identity = 37/128 (28.91%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   13 PYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLR------------CHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            P D+LD+G  +G ST  L +++P+A++T +D+  H LA ++ +  ++             H  A++    D  FD V+   + +E+P +A+  I+ E  RV R  G   ++D    S    K   YIL
Sbjct:  141 PQDILDIGCSVGMSTFALHKTYPQAKITGLDLSPHFLAIANYNTRIKYPELTKNDQIQWVHETAENTGLPDQSFDFVSCFLIFHELPQEASRQILREIRRVLRPNGYFTLMDMNPHSDIYRKMPPYIL 268          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: A0A256BA35_9CYAN (SAM-dependent methyltransferase n=5 Tax=unclassified Pseudanabaena TaxID=2593292 RepID=A0A256BA35_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 8.860e-10
Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = 1
Query:   13 PYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFLR------------CHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            P D+LD+G  +G ST  L  S+P+A++T +D+  + LA ++ +   +             HA A+     D  FD V+   + +E+P DA   I+ E  RV R  G   ++D    S    K   YIL
Sbjct:  142 PQDILDIGCSVGMSTFALHNSYPQAKITGLDLSPYFLAIANYNTRTKHPELAKNGQVKWIHATAEQTGLPDNSFDFVSCFLIFHELPQDAIRQILRELRRVLRPNGYFTLMDMNPSSDIYVKMPPYIL 269          
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Match: B0C1W6_ACAM1 (Methyltransferase, putative n=4 Tax=Acaryochloris TaxID=155977 RepID=B0C1W6_ACAM1)

HSP 1 Score: 66.6 bits (161), Expect = 1.130e-9
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    7 SCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSV-----DVFLRCHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVIAMLDRKAKSGFTAKDLKYIL 360
            + P D+LD+G  +G ST  L  ++PEAR+T +D+  + LA ++      D     H  A+     D  FDLV++  V +E+P  A   I AE  R+ R  G +A++D    S    K   Y+L
Sbjct:  138 TAPKDILDMGCSVGLSTLALQETYPEARLTGLDLSPYFLAIANHNTPANDSLQWIHRAAEETSLPDNSFDLVSICLVCHELPRTAICNIFAEAHRLLRPQGHLAIMDMNPNSDIHRKLPPYVL 260          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180817 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWG9_9STRA1.320e-12595.85S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z4S2_9STRA5.240e-2935.27S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A8J7YZY7_9CYAN5.240e-1235.38Methyltransferase domain-containing protein n=1 Ta... [more]
A0A1Z4QK45_9NOST1.690e-1033.88Type 11 methyltransferase n=1 Tax=Cylindrospermum ... [more]
D8FY96_9CYAN3.180e-1032.79Methyltransf_11 domain-containing protein n=1 Tax=... [more]
UPI00168543BE3.200e-1033.61class I SAM-dependent methyltransferase n=9 Tax=Co... [more]
A0A8J7BSL3_9CYAN6.290e-1034.43Class I SAM-dependent methyltransferase n=3 Tax=un... [more]
UPI00168035996.330e-1028.91class I SAM-dependent methyltransferase n=1 Tax=Ps... [more]
A0A256BA35_9CYAN8.860e-1030.47SAM-dependent methyltransferase n=5 Tax=unclassifi... [more]
B0C1W6_ACAM11.130e-933.33Methyltransferase, putative n=4 Tax=Acaryochloris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:110032..110613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180817|e_gw1.228.5.1
DescriptionMethylase involved in ubiquinone menaquinone biosynthesis
COG categoryQ
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1FZV7@1117|Cyanobacteria,1HMW5@1161|Nostocales
Evalue2.86e-12
Seed ortholog28072.Nos7524_1342
Hectar predicted targeting categoryother localisation
TranscriptId181139
TrackFilteredModels1
ProteinId180817
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180817gene_11521Tribonema minus UTEX_B_3156 geneContig_228 110032..110613 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11521_1exon_11521_1Tribonema minus UTEX_B_3156 exonContig_228 110032..110613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11521CDS_11521Tribonema minus UTEX_B_3156 CDSContig_228 110032..110613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180817Trimin1|180817|e_gw1.228.5.1Tribonema minus UTEX_B_3156 polypeptideContig_228 110032..110613 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11521 ID=mRNA_11521|Name=jgi.p|Trimin1|180817|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_228:110032..110613- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCGTGTCCCTACGACGTCCTGGACGTTGGCGCAGGACTCGGTGC
CTCGACGCACATGCTGACGAGATCCTTCCCCGAGGCTCGCGTCACGGCAG
TCGATGTCGACTCGCATTCCCTGGCTGCATCTTCTGTCGACGTTTTTCTG
AGGTGCCATGCGGACGCGCAGAGCTTGCCATTTGAGGACGCCTGCTTTGA
CCTTGTAAATCTTGCATATGTTGTCAATGAGATACCGGTGGATGCTGCGT
CGTTCATCATGGCTGAGTGCGCTCGGGTCACACGCCACACGGGCGTTATC
GCCATGCTCGACAGGAAAGCGAAGAGTGGTTTCACCGCCAAGGACCTGAA
GTACATCCTCGAGCACGCCGGTTACGCGGTGGTCGATGTGGATGACTCAC
ATGACACTCGCATGGTCACTGCCTGGCGCACTGTCGGGGCACCGATCAAG
GTGACAGTAGCCGTGCAGGCGCAGAAGAAGGGGAGCGCGTTGTGGGTGTT
TGAGCTGCTGTCGACCATACTGCAACTTTTTGCAGCCGTAATGTGGACAC
TAGTCATTCTGGAGCTGATTAAGCTCATATAG
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protein sequence of jgi.p|Trimin1|180817

>Trimin1|180817|e_gw1.228.5.1 ID=Trimin1|180817|e_gw1.228.5.1|Name=jgi.p|Trimin1|180817|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp
MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVDVFL
RCHADAQSLPFEDACFDLVNLAYVVNEIPVDAASFIMAECARVTRHTGVI
AMLDRKAKSGFTAKDLKYILEHAGYAVVDVDDSHDTRMVTAWRTVGAPIK
VTVAVQAQKKGSALWVFELLSTILQLFAAVMWTLVILELIKLI*
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mRNA from alignment at Contig_228:110032..110613-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11521 ID=mRNA_11521|Name=jgi.p|Trimin1|180817|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_228:110032..110613- (Tribonema minus UTEX_B_3156 )
ATGAACTCGTGTCCCTACGACGTCCTGGACGTTGGCGCAGGACTCGGTGC CTCGACGCACATGCTGACGAGATCCTTCCCCGAGGCTCGCGTCACGGCAG TCGATGTCGACTCGCATTCCCTGGCTGCATCTTCTGTCGACGTTTTTCTG AGGTGCCATGCGGACGCGCAGAGCTTGCCATTTGAGGACGCCTGCTTTGA CCTTGTAAATCTTGCATATGTTGTCAATGAGATACCGGTGGATGCTGCGT CGTTCATCATGGCTGAGTGCGCTCGGGTCACACGCCACACGGGCGTTATC GCCATGCTCGACAGGAAAGCGAAGAGTGGTTTCACCGCCAAGGACCTGAA GTACATCCTCGAGCACGCCGGTTACGCGGTGGTCGATGTGGATGACTCAC ATGACACTCGCATGGTCACTGCCTGGCGCACTGTCGGGGCACCGATCAAG GTGACAGTAGCCGTGCAGGCGCAGAAGAAGGGGAGCGCGTTGTGGGTGTT TGAGCTGCTGTCGACCATACTGCAACTTTTTGCAGCCGTAATGTGGACAC TAGTCATTCTGGAGCTGATTAAGCTCATATAG
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Coding sequence (CDS) from alignment at Contig_228:110032..110613-

>mRNA_11521 ID=mRNA_11521|Name=jgi.p|Trimin1|180817|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_228:110032..110613- (Tribonema minus UTEX_B_3156 )
ATGAACTCGTGTCCCTACGACGTCCTGGACGTTGGCGCAGGACTCGGTGC
CTCGACGCACATGCTGACGAGATCCTTCCCCGAGGCTCGCGTCACGGCAG
TCGATGTCGACTCGCATTCCCTGGCTGCATCTTCTGTCGACGTTTTTCTG
AGGTGCCATGCGGACGCGCAGAGCTTGCCATTTGAGGACGCCTGCTTTGA
CCTTGTAAATCTTGCATATGTTGTCAATGAGATACCGGTGGATGCTGCGT
CGTTCATCATGGCTGAGTGCGCTCGGGTCACACGCCACACGGGCGTTATC
GCCATGCTCGACAGGAAAGCGAAGAGTGGTTTCACCGCCAAGGACCTGAA
GTACATCCTCGAGCACGCCGGTTACGCGGTGGTCGATGTGGATGACTCAC
ATGACACTCGCATGGTCACTGCCTGGCGCACTGTCGGGGCACCGATCAAG
GTGACAGTAGCCGTGCAGGCGCAGAAGAAGGGGAGCGCGTTGTGGGTGTT
TGAGCTGCTGTCGACCATACTGCAACTTTTTGCAGCCGTAATGTGGACAC
TAGTCATTCTGGAGCTGATTAAGCTCATATAG
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