mRNA_11504 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180818
Unique NamemRNA_11504
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180818 vs. uniprot
Match: A0A835Z265_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z265_9STRA)

HSP 1 Score: 220 bits (560), Expect = 5.930e-73
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 MCTSYVINLDRDADKWKAICKRAGRALTRFPAITGATASCRPWYMNPMMWGCLCSHRKLWKMAASSSTPFLILEDDCLFCDDFEAKVSMAMQTVPSDWDVV 303
            MCTSYVINLDRDADKWKAICKRAGRALTRFPAITGATASCRPWYMNPMMWGCLCSHRKLWKMAASSSTPFLILEDDCLFCDDFEAKVSMAMQTVPSDWDVV
Sbjct:    1 MCTSYVINLDRDADKWKAICKRAGRALTRFPAITGATASCRPWYMNPMMWGCLCSHRKLWKMAASSSTPFLILEDDCLFCDDFEAKVSMAMQTVPSDWDVV 101
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BLAST of jgi.p|Trimin1|180818 vs. uniprot
Match: A0A835Z4H8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 4.390e-62
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 MCTSYVINLDRDADKWKAICKRAGRALTRFPAITGATASCRPWYMNPMMWGCLCSHRKLWKMAASSSTPFLILEDDCLFCDDFEAKVSMAMQTVPSDWDVV 303
            MCTSYVINLDRDADKWK ICKRAGR LTRFPAITGATASCRPWYMNPMMWGCLCSHRKLWK AASSS PFLILEDDCLFCDDFEA+VS+ MQTVPSDWDVV
Sbjct:  327 MCTSYVINLDRDADKWKTICKRAGRVLTRFPAITGATASCRPWYMNPMMWGCLCSHRKLWKKAASSSKPFLILEDDCLFCDDFEAEVSVVMQTVPSDWDVV 427
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BLAST of jgi.p|Trimin1|180818 vs. uniprot
Match: A0A4Q1VFU0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium betae TaxID=244734 RepID=A0A4Q1VFU0_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 2.870e-7
Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:   10 SYVINLDRDADKWKAICKR---AGRALTRFPAITGATASCRPWY----------MNPMMWGCLCSHRKLWKMAASSSTPFLILEDDCLFCDDFEAKVSMAMQTVPSDWDVV 303
            ++V+NLDR  +K++   KR    G A  RFPA+ G+  +                 P   G   S  K+WKM A    P L+ EDDC    D  A++S  + T+  DWD++
Sbjct:   30 NFVVNLDRQPEKFERFLKRNEGCGIAFERFPAVDGSKLTDEEVMAMGLVAPGSRFAPGTVGGTASMSKIWKMVAEQDEPALVFEDDCTIRHDTLARLSTLLPTL-GDWDIL 139
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BLAST of jgi.p|Trimin1|180818 vs. uniprot
Match: A0A813GGM7_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GGM7_POLGL)

HSP 1 Score: 50.8 bits (120), Expect = 3.800e-5
Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:  151 GCLCSHRKLWKM-------AASSSTPFLILEDDCLFCDDF-EAKVSMAMQTVPSDWDVV 303
            GC  SH  +W+         A    PFL++EDDC F +DF E  ++  M TVP DW++V
Sbjct:  208 GCALSHMMIWRDIVQRCSDGADPQAPFLVIEDDCQFAEDFSEQLLTERMSTVPEDWEIV 266
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BLAST of jgi.p|Trimin1|180818 vs. uniprot
Match: UPI0004800592 (glycosyltransferase family 25 protein n=1 Tax=Chelativorans sp. J32 TaxID=935840 RepID=UPI0004800592)

HSP 1 Score: 50.1 bits (118), Expect = 5.960e-5
Identity = 42/117 (35.90%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:    1 MCTSYVINLDRDADKWKAICKRAGR----ALTRFPAITG------ATASCRP--WY---MNPMMWGCLCSHRKLWKMAASSSTPFL-ILEDDCLFCDDFEAKVSMAMQTVPSDWDVV 303
            M T+YVINLDRD ++W  + +R GR    A TR  A+        A A   P  +Y   + P    C  SHRK+W+   SS   +  I EDD  F D  +  +S +   +P+D D+V
Sbjct:    1 MLTAYVINLDRDVERWARM-ERLGRQFGIAWTRVTAVDKNDPAIIARAEKMPLSFYGAVIGPGAVACFESHRKIWREIVSSDATYAAIFEDDVHFSDGLKPFLS-STDWIPADSDLV 115
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BLAST of jgi.p|Trimin1|180818 vs. uniprot
Match: A0A3D8M458_9ALTE (Glycosyl transferase family 25 n=2 Tax=Alteromonas aestuariivivens TaxID=1938339 RepID=A0A3D8M458_9ALTE)

HSP 1 Score: 50.1 bits (118), Expect = 6.450e-5
Identity = 37/119 (31.09%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:   13 YVINLDRDADKW---KAICKRAGRALTRFPAITGATASC------------RPWYMNPMMWG---CLCSHRKLWKMAASSSTPF-LILEDDCLFCDDFEAKVSMAMQTVPS---DWDVV 303
            Y+INLD   D++   KA   +AG    RF A+ GA+ +             R  Y   +  G   C  SHRK+W++ AS S+P+ ++LEDD     +    +  A++T+ +   DWD++
Sbjct:   38 YLINLDSSVDRYEKSKARLTQAGVTFNRFSAVHGASLAPQELNGHYSENLNRQQYHKALTKGEIGCYMSHRKVWQLIASGSSPYGVVLEDDI----EIVGNLPGALKTIDALKFDWDII 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180818 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z265_9STRA5.930e-73100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4H8_9STRA4.390e-6293.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4Q1VFU0_9BRAD2.870e-732.43Uncharacterized protein n=1 Tax=Bradyrhizobium bet... [more]
A0A813GGM7_POLGL3.800e-540.68Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
UPI00048005925.960e-535.90glycosyltransferase family 25 protein n=1 Tax=Chel... [more]
A0A3D8M458_9ALTE6.450e-531.09Glycosyl transferase family 25 n=2 Tax=Alteromonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:74899..75201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180818|e_gw1.228.46.1
DescriptionGlycosyl transferase-like protein
COG categoryH
Max annot lvl5653|Kinetoplastida
EggNOG OGsKOG4179@1|root,KOG4179@2759|Eukaryota,3XV74@5653|Kinetoplastida
Evalue4.64e-09
Seed ortholog5693.XP_815025.1
Hectar predicted targeting categoryother localisation
TranscriptId181140
TrackFilteredModels1
ProteinId180818
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180818gene_11504Tribonema minus UTEX_B_3156 geneContig_228 74899..75201 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11504_1exon_11504_1Tribonema minus UTEX_B_3156 exonContig_228 74899..75201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11504CDS_11504Tribonema minus UTEX_B_3156 CDSContig_228 74899..75201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180818Trimin1|180818|e_gw1.228.46.1Tribonema minus UTEX_B_3156 polypeptideContig_228 74899..75201 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11504 ID=mRNA_11504|Name=jgi.p|Trimin1|180818|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_228:74899..75201+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTACGTCGTACGTCATAAATCTCGACCGCGACGCAGACAAGTGGAA
GGCCATCTGCAAGAGAGCTGGGCGGGCGCTGACGAGATTTCCGGCGATCA
CCGGGGCGACGGCGAGCTGCAGGCCTTGGTACATGAACCCGATGATGTGG
GGGTGCCTCTGTTCGCACCGGAAGCTATGGAAGATGGCCGCATCCTCGTC
AACGCCGTTTCTCATCCTCGAGGACGACTGCCTGTTCTGCGATGACTTCG
AGGCCAAAGTCAGCATGGCCATGCAGACGGTACCGAGCGACTGGGATGTG
GTC
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protein sequence of jgi.p|Trimin1|180818

>Trimin1|180818|e_gw1.228.46.1 ID=Trimin1|180818|e_gw1.228.46.1|Name=jgi.p|Trimin1|180818|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
MCTSYVINLDRDADKWKAICKRAGRALTRFPAITGATASCRPWYMNPMMW
GCLCSHRKLWKMAASSSTPFLILEDDCLFCDDFEAKVSMAMQTVPSDWDV
V
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mRNA from alignment at Contig_228:74899..75201+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11504 ID=mRNA_11504|Name=jgi.p|Trimin1|180818|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_228:74899..75201+ (Tribonema minus UTEX_B_3156 )
ATGTGTACGTCGTACGTCATAAATCTCGACCGCGACGCAGACAAGTGGAA
GGCCATCTGCAAGAGAGCTGGGCGGGCGCTGACGAGATTTCCGGCGATCA
CCGGGGCGACGGCGAGCTGCAGGCCTTGGTACATGAACCCGATGATGTGG
GGGTGCCTCTGTTCGCACCGGAAGCTATGGAAGATGGCCGCATCCTCGTC
AACGCCGTTTCTCATCCTCGAGGACGACTGCCTGTTCTGCGATGACTTCG
AGGCCAAAGTCAGCATGGCCATGCAGACGGTACCGAGCGACTGGGATGTG
GTC
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Coding sequence (CDS) from alignment at Contig_228:74899..75201+

>mRNA_11504 ID=mRNA_11504|Name=jgi.p|Trimin1|180818|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_228:74899..75201+ (Tribonema minus UTEX_B_3156 )
ATGTGTACGTCGTACGTCATAAATCTCGACCGCGACGCAGACAAGTGGAA
GGCCATCTGCAAGAGAGCTGGGCGGGCGCTGACGAGATTTCCGGCGATCA
CCGGGGCGACGGCGAGCTGCAGGCCTTGGTACATGAACCCGATGATGTGG
GGGTGCCTCTGTTCGCACCGGAAGCTATGGAAGATGGCCGCATCCTCGTC
AACGCCGTTTCTCATCCTCGAGGACGACTGCCTGTTCTGCGATGACTTCG
AGGCCAAAGTCAGCATGGCCATGCAGACGGTACCGAGCGACTGGGATGTG
GTC
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