|
|
Homology
BLAST of jgi.p|Trimin1|351444 vs. uniprot
Match: A0A836C8P1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P1_9STRA) HSP 1 Score: 528 bits (1360), Expect = 8.580e-180 Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 1
Query: 64 AQAPQITIARLDVDAPPLRHRDMWRRHVAPRLYAFAAAVYALRGDDGERYAFLQSARREQLRWLLERGGCGFFGEFAQREERPANPPRLLSPGAAPAXXXXXXXXXXXXXXXXXXXATPQLPASPAXXXXXXXXXXXXXXXXXXXXSRKKRRASPVEDGAASAXXXXXXXITSPVTRSMARRMASGAAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAPLFPITSASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEADSAPVCSGADTGTDSAIRARSCDNCSIGKCNSSGGTAPAAPPAAEAGGVQEPAVTASAAPXXXXXXXXXGTAANFHTEQETASAEAEPAQRTERVSGDATTTAPAASPGEAEEATQHAAAVVAARFTAEGAPEAAXXXXXXXXXXXXXXXXXXTPAAGVDAARRAADMCACGCRLQLRQRRPSS 1575
AQAPQITIARLDVDAPPLRHRDMWRRHVAPRLYAFAAAVYALRGDDGERYAFLQSARREQLRWLLERGGCGFFGEFAQREERPANPPRLLSPGAAPAXXXXXXXXXXXXXXXXXXXATPQLPASPAXXXXXXXXXXXXXXXXXXXXSRKKRRASPVEDGAASAXXXXXXXITSPVTRSMARRMASGAAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAPLFPITSASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEADSAPVCSGADTGTDSAIRARSCDNCSIGKCNSSGGTAPAAPPAAEAGGVQEPAVTASAAPXXXXXXXXXGTAANFHTEQETASAEAEPAQRTERVSGDATTTAPAASPGEAEEATQHAAAVVAARFTAEGAPEAAXXXXXXXXXXXXXXXXXXTPAAGVDAARRAADMCACGCRLQLRQRRPSS
Sbjct: 22 AQAPQITIARLDVDAPPLRHRDMWRRHVAPRLYAFAAAVYALRGDDGERYAFLQSARREQLRWLLERGGCGFFGEFAQREERPANPPRLLSPGAAPAXXXXXXXXXXXXXXXXXXXATPQLPASPAXXXXXXXXXXXXXXXXXXXXSRKKRRASPVEDGAASAXXXXXXXITSPVTRSMARRMASGAAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAPLFPITSASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEADSAPVCSGADTGTDSAIRARSCDNCSIGKCNSSGGTAPAAPPAAEAGGVQEPAVTASAAPXXXXXXXXXGTAANFHTEQETASAEAEPAQRTERVSGDATTTAPAASPGEAEEATQHAAAVVAARFTAEGAPEAAXXXXXXXXXXXXXXXXXXTPAAGVDAARRAADMCACGCRLQLRQRRPSS 525
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|351444|estExt_Genemark1.C_Ctg_900068 |
| Max annot lvl | 2836|Bacillariophyta |
| EggNOG OGs | 2E1QQ@1|root,2S90U@2759|Eukaryota,2XCDV@2836|Bacillariophyta |
| Evalue | 0.000133 |
| Seed ortholog | 35128.Thaps8292 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-06_010950.1 |
| TranscriptId | 351766 |
| Track | FilteredModels1 |
| ProteinId | 351444 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11468 ID=mRNA_11468|Name=jgi.p|Trimin1|351444|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1846bp|location=Sequence derived from alignment at Contig_90:555609..558851+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCTGCCGCTGCCGCCGCCACCGCCGCCGCCGCCGCTGCCGCTGCC GCCTCCCCGCCCCGCGCAGGCGCCGCAGATCACGATCGCGCGCCTTGACG TCGACGCGCCGCCGCTGCGCCACCGCGACATGTGGCGGCGCCACGTCGCG CCGCGCCTGTACGCGTTCGCCGCCGCCGTGTACGCGCTGCGCGGCGACGA CGGCGAGCGCTACGCCTTCCTGCAGAGCGCGCGCCGCGAGCAGCTGCGCT GGCTGCTGGAGCGCGGCGGCTGCGGCTTCTTCGGCGAGTTCGCGCAGCGT GAGGAGCGCCCTGCCAACCCCCCGAGATTGCTGAGCCCTGGCGCCGCGCC GGCAGCAGCGGCGGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGTCAGCAC CGCCCAGCACCGCGACGCCGCAGCTGCCTGCATCCCCTGCTGCCGCTGCC ACTCGTTCACGCGCCAAGCGTGGCGGCGGTGGCCGCGGCCGCGGCCGTGC CAGCAGGAAGAAGCGCAGAGCGTCACCTGTAGAGGACGGCGCCGCCAGCG CAGCTGCTGCCGCGCCGGCGCCGATCACATCCCCTGTCACGAGGTCAATG GCGAGGCGAATGGCCAGCGGCGCCGCCGCCGCCGGCAGTGGCAGCAGCGG CGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCG GCGGCAGCGGCGGCGGCGGCAGCGGCGTCGGCGGCGGCGGCGACTCCGCC CCCCTGTTCCCCATCACCAGCGCGAGCTTAGGTGGCGGCGGCGGCGGCGG CGGCAGTGGCGGCGGCGGCGGCACCGGCAGCAGTCGCAAGAAGGTCAGGA AGGCCTCGCCGCACGGCAGTACGCCGAAGAAAAAGGGCTCTGGCACTGCA GCAAGCCCGAGCGGTCGTCGGCTGACGTACTATTTCCCGCTCGTGGCGTC GCCGCACTCCGGCAACGGCGGAGGCGCAGCGACAGCTGCTGCTGTGGCCG CTGCTGCTGCCGCTGCTGAGGCGGACAGCGCTCCTGTTTGCTCTGGCGCA GACACCGGCACCGACAGCGCCATCAGGGCACGCAGCTGCGACAACTGCAG CATCGGCAAGTGCAACAGCAGCGGCGGCACAGCACCCGCCGCGCCGCCAG CAGCAGAGGCTGGTGGTGTGCAGGAGCCTGCGGTAACGGCATCTGCAGCA CCGGCGGTCGCCGCGCCAGCTGCAGCCGCTGGCACAGCGGCAAACTTTCA CACCGAACAGGAGACGGCGTCAGCGGAAGCAGAACCTGCACAGCGCACAG AGAGGGTGTCGGGTGACGCAACGACGACAGCACCTGCGGCATCACCTGGC GAAGCGGAGGAGGCAACGCAGCATGCGGCAGCTGTGGTCGCGGCGCGATT TACGGCGGAAGGCGCGCCGGAGGCCGCTGCTGCTGCCGCTGCGGCAACGG CAGTGGCGCCAGCACCAGCACCAGCGGCGTCGACGCCTGCGGCGGGAGTG GATGCGGCACGTCGGGCCGCAGACATGTGCGCTTGCGGCTGCCGCCTGCA GCTGCGGCAGCGACGGCCGAGCAGCTGACCGTTGCAGTACTCACATCGCC TGCTGTGTTCCAGCCTCATGTGTCCAGTGTAGATCAGTGTAGATTGCCAC GGACCGCCGCAATGACGCGCACTTTCCCCATCCACCAGAGGCAGTCTGGT GTAGCGCACTCGGCATCGGTTGTCTCGTGCATACCGTTAAGGCAGTAGGT AGCACACAAAGCGGGGGTGCTGCTGGAGAGCCTGAGCATAAATGAGCACG AAGGCAGCTTTGCGTGCTTCTTTCGGCACTGTGAGCTGGCAGTGTG back to topprotein sequence of jgi.p|Trimin1|351444 >Trimin1|351444|estExt_Genemark1.C_Ctg_900068 ID=Trimin1|351444|estExt_Genemark1.C_Ctg_900068|Name=jgi.p|Trimin1|351444|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=526bp
MPLPLPPPPPPPPLPLPPPRPAQAPQITIARLDVDAPPLRHRDMWRRHVA PRLYAFAAAVYALRGDDGERYAFLQSARREQLRWLLERGGCGFFGEFAQR EERPANPPRLLSPGAAPAAAAAAAAAAAAAASAPPSTATPQLPASPAAAA TRSRAKRGGGGRGRGRASRKKRRASPVEDGAASAAAAAPAPITSPVTRSM ARRMASGAAAAGSGSSGGGGGGSGGGGGGSGGGGGSGGGGSGVGGGGDSA PLFPITSASLGGGGGGGGSGGGGGTGSSRKKVRKASPHGSTPKKKGSGTA ASPSGRRLTYYFPLVASPHSGNGGGAATAAAVAAAAAAAEADSAPVCSGA DTGTDSAIRARSCDNCSIGKCNSSGGTAPAAPPAAEAGGVQEPAVTASAA PAVAAPAAAAGTAANFHTEQETASAEAEPAQRTERVSGDATTTAPAASPG EAEEATQHAAAVVAARFTAEGAPEAAAAAAAATAVAPAPAPAASTPAAGV DAARRAADMCACGCRLQLRQRRPSS* back to topmRNA from alignment at Contig_90:555609..558851+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11468 ID=mRNA_11468|Name=jgi.p|Trimin1|351444|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3243bp|location=Sequence derived from alignment at Contig_90:555609..558851+ (Tribonema minus UTEX_B_3156 ) ATGCCGCTGCCGCTGCCGCCGCCACCGCCGCCGCCGCCGCTGCCGCTGCC
GCCTCCCCGCCCCGCGCAGGCGCCGCAGATCACGATCGCGCGCCTTGACG
TCGACGCGCCGCCGCTGCGCCACCGCGACATGTGGCGGCGCCACGTCGCG
CCGCGCCTGTACGCGTTCGCCGCCGCCGTGTACGCGCTGCGCGGCGACGA
CGGCGAGCGCTACGCCTTCCTGCAGAGCGCGCGCCGCGAGCAGCTGCGCT
GGCTGCTGGAGCGCGGCGGCTGCGGCTTCTTCGGCGAGTTCGCGCAGGTG
CACGCCTGCGCGCCGCGCCGCCGCTGCCGCCGCCGCCGCCGCTGCTGCTG
CTGCTGCGCGCCAGTCCGCTTGTGTCGTACATTACATGGCGTCGTGTACT
GCCATGTGTACTGCCGTGTGTGATGGAGCATGTGCGCCCCTAGCGCCAAT
GGCTGCGTGGGATCGCTCGAAGCATATTCTGGTGTCAGGTCCGCGCGGCA
GCGCGCCGCCGAGCGCTGCCGCGTGTGAGCTGCTGCCGCGCTTCTCCCTT
GAATTCTGCTCAAGGGTGGTCCGCCCCCGCCTCCGCTGCCTTTGTGTCGA
GCTTGTGGGGGTGTGCCGTTGTGTCATGATTGGCGCGGGGGGGGGGGGGG
GGGGGGCGTTTTGACACTACCATTCATTCAATTCCTTGTCAGAGCGCTGT
CCCTGTCACACCGGCTCAGGTTTGGGACGACGCAGTAGATGCAATCGGTG
GGTACATGCAGTCTGTAGCGGGGGATCCAGGAGGCCACGCCGCGCATTCG
TCGCGAAGTCTCTATTCGTCAAATGTCACCCGTCGCAACCACGGTCGCGC
CGCCCGTGCAGCGCGTCACGTCACCAGCGCCATCATACAGACTGTGCTCA
GGCTTGAATAGCCGGGGTGGTGGCCTGGTAGGCCGGGGCTCAATGACGCC
CCGTGGGTGGGGTAGGTAGGCTTGCGGTGAGGTCAGTGCTCAACGCCGAG
CGCTGCGTGCCACAGCGCAGACCGCGCAGGCGCTGCAGCACTACCGCGGC
CGTCGTGGATATGCAGTAAAACTTGTTTTGCGCTCTACCGCCGTCGCGGA
CATGCAATCGAACGCCCGCACATCACCTATGCAGGGGATCGATGCATCCT
TAGAAAGGTCACCGTGCCACGCAGTGCTGCGACCGCGCACTGACTGGTTG
ACCCCATCGCCCCCTCTGCTGCCCCACAGCGTGAGGAGCGCCCTGCCAAC
CCCCCGAGATTGCTGAGCCCTGGCGCCGCGCCGGCAGCAGCGGCGGCAGC
AGCAGCAGCGGCGGCGGCGGCGGCGTCAGCACCGCCCAGCACCGCGACGC
CGCAGCTGCCTGCATCCCCTGCTGCCGCTGCCACTCGTTCACGCGCCAAG
CGTGGCGGCGGTGGCCGCGGCCGCGGCCGTGCCAGCAGGAAGAAGCGCAG
AGCGTCACCTGTAGAGGACGGCGCCGCCAGCGCAGCTGCTGCCGCGCCGG
CGCCGATCACATCCCCTGTCACGAGGTCAATGGCGAGGCGAATGGCCAGC
GGCGCCGCCGCCGCCGGCAGTGGCAGCAGCGGCGGCGGCGGCGGCGGCAG
CGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCAGCGGCGGCGGCG
GCAGCGGCGTCGGCGGCGGCGGCGACTCCGCCCCCCTGTTCCCCATCACC
AGGTCAGCCTCCAGACGGCACGGCAGCGGCGCTGGCAGCAGCGGTGCTGC
CCCTATACCAAGTTCTACGCCCAAGCAGAGTGAGAATTCCTGCGGTGCTG
CTGCCTCCGCCACGCCTGTCCGAAGTCGTACGCCTAAACGGAGCGCGAGC
TTAGGTGGCGGCGGCGGCGGCGGCGGCAGTGGCGGCGGCGGCGGCACCGG
CAGCAGTCGCAAGAAGGTCAGGAAGGCCTCGCCGCACGGCAGTACGCCGA
AGAAAAAGGGCTCTGGCACTGCAGCAAGCCCGAGCGGTCGTCGGCTGACG
TACTATTTCCCGCTCGTGGCGTCGCCGCACTCCGGCAACGGCGGAGGCGC
AGCGACAGCTGCTGCTGTGGCCGCTGCTGCTGCCGCTGCTGAGGCGGACA
GCGCTCCTGTTTGCTCTGGCGCAGAGTCGGCTGCAGTAGAAGCTGGCTCT
GTTGCAAATGGCAGTGGCGGAGGCAGCATCAGCAGCGCTCTCAGCGCATC
TGAAAGCATCGCTCGCAGCAGCGGCGGCGGCAGCGATGCTATTGGTGGCG
CTGGCAGCAGCAGCGAGCTGTGCTCAGCAGCAGACATGACACTCGTGCCT
GCGTGTGCAGCTGCTGCTGCGGGCAGTATGCAAGTACCTGTTAAAGAGCT
CGCTGTGGCAATCCCACGTGGGACAAAGGAGCAGGCCGCAACCAGCGCGA
AAGCACCGGCACCGACAGCGCCATCAGGGCACGCAGCTGCGACAACTGCA
GCATCGGCAAGTGCAACAGCAGCGGCGGCACAGGTAGCAGCAGCACCAGT
GGCGGCAGACGCTGCACACGCTGCTGCAGCACCCGCCGCGCCGCCAGCAG
CAGAGGCTGGTGGTGTGCAGGAGCCTGCGGTAACGGCATCTGCAGCACCG
GCGGTCGCCGCGCCAGCTGCAGCCGCTGGCACAGCGGCAAACTTTCACAC
CGAACAGGAGACGGCGTCAGCGGAAGCAGAACCTGCACAGCGCACAGAGA
GGGTGTCGGGTGACGCAACGACGACAGCACCTGCGGCATCACCTGGCGAA
GCGGAGGAGGCAACGCAGCATGCGGCAGCTGTGGTCGCGGCGCGATTTAC
GGCGGAAGGCGCGCCGGAGGCCGCTGCTGCTGCCGCTGCGGCAACGGCAG
TGGCGCCAGCACCAGCACCAGCGGCGTCGACGCCTGCGGCGGGAGTGGAT
GCGGCACGTCGGGCCGCAGACATGTGCGCTTGCGGCTGCCGCCTGCAGCT
GCGGCAGCGACGGCCGAGCAGCTGACCGTTGCAGTACTCACATCGCCTGC
TGTGTTCCAGCCTCATGTGTCCAGTGTAGATCAGTGTAGATTGCCACGGA
CCGCCGCAATGACGCGCACTTTCCCCATCCACCAGAGGCAGTCTGGTGTA
GCGCACTCGGCATCGGTTGTCTCGTGCATACCGTTAAGGCAGTAGGTAGC
ACACAAAGCGGGGGTGCTGCTGGAGAGCCTGAGCATAAATGAGCACGAAG
GCAGCTTTGCGTGCTTCTTTCGGCACTGTGAGCTGGCAGTGTG back to topCoding sequence (CDS) from alignment at Contig_90:555609..558851+ >mRNA_11468 ID=mRNA_11468|Name=jgi.p|Trimin1|351444|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1578bp|location=Sequence derived from alignment at Contig_90:555609..558851+ (Tribonema minus UTEX_B_3156 ) ATGCCGCTGCCGCTGCCGCCGCCACCGCCGCCGCCGCCGCTGCCGCTGCC GCCTCCCCGCCCCGCGCAGGCGCCGCAGATCACGATCGCGCGCCTTGACG TCGACGCGCCGCCGCTGCGCCACCGCGACATGTGGCGGCGCCACGTCGCG CCGCGCCTGTACGCGTTCGCCGCCGCCGTGTACGCGCTGCGCGGCGACGA CGGCGAGCGCTACGCCTTCCTGCAGAGCGCGCGCCGCGAGCAGCTGCGCT GGCTGCTGGAGCGCGGCGGCTGCGGCTTCTTCGGCGAGTTCGCGCAGCGT GAGGAGCGCCCTGCCAACCCCCCGAGATTGCTGAGCCCTGGCGCCGCGCC GGCAGCAGCGGCGGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGTCAGCAC CGCCCAGCACCGCGACGCCGCAGCTGCCTGCATCCCCTGCTGCCGCTGCC ACTCGTTCACGCGCCAAGCGTGGCGGCGGTGGCCGCGGCCGCGGCCGTGC CAGCAGGAAGAAGCGCAGAGCGTCACCTGTAGAGGACGGCGCCGCCAGCG CAGCTGCTGCCGCGCCGGCGCCGATCACATCCCCTGTCACGAGGTCAATG GCGAGGCGAATGGCCAGCGGCGCCGCCGCCGCCGGCAGTGGCAGCAGCGG CGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCG GCGGCAGCGGCGGCGGCGGCAGCGGCGTCGGCGGCGGCGGCGACTCCGCC CCCCTGTTCCCCATCACCAGCGCGAGCTTAGGTGGCGGCGGCGGCGGCGG CGGCAGTGGCGGCGGCGGCGGCACCGGCAGCAGTCGCAAGAAGGTCAGGA AGGCCTCGCCGCACGGCAGTACGCCGAAGAAAAAGGGCTCTGGCACTGCA GCAAGCCCGAGCGGTCGTCGGCTGACGTACTATTTCCCGCTCGTGGCGTC GCCGCACTCCGGCAACGGCGGAGGCGCAGCGACAGCTGCTGCTGTGGCCG CTGCTGCTGCCGCTGCTGAGGCGGACAGCGCTCCTGTTTGCTCTGGCGCA GACACCGGCACCGACAGCGCCATCAGGGCACGCAGCTGCGACAACTGCAG CATCGGCAAGTGCAACAGCAGCGGCGGCACAGCACCCGCCGCGCCGCCAG CAGCAGAGGCTGGTGGTGTGCAGGAGCCTGCGGTAACGGCATCTGCAGCA CCGGCGGTCGCCGCGCCAGCTGCAGCCGCTGGCACAGCGGCAAACTTTCA CACCGAACAGGAGACGGCGTCAGCGGAAGCAGAACCTGCACAGCGCACAG AGAGGGTGTCGGGTGACGCAACGACGACAGCACCTGCGGCATCACCTGGC GAAGCGGAGGAGGCAACGCAGCATGCGGCAGCTGTGGTCGCGGCGCGATT TACGGCGGAAGGCGCGCCGGAGGCCGCTGCTGCTGCCGCTGCGGCAACGG CAGTGGCGCCAGCACCAGCACCAGCGGCGTCGACGCCTGCGGCGGGAGTG GATGCGGCACGTCGGGCCGCAGACATGTGCGCTTGCGGCTGCCGCCTGCA GCTGCGGCAGCGACGGCCGAGCAGCTGA back to top
|