mRNA_11446 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338264
Unique NamemRNA_11446
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835YKZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ3_9STRA)

HSP 1 Score: 783 bits (2022), Expect = 1.850e-285
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 1
Query:    1 MGTLSSMIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQYREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSEAPPRQPAG 1209
            MGTLSSMIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQYREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSEAPPRQPAG
Sbjct:    1 MGTLSSMIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQYREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSEAPPRQPAG 403          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835YL26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL26_9STRA)

HSP 1 Score: 388 bits (996), Expect = 5.490e-130
Identity = 222/390 (56.92%), Postives = 274/390 (70.26%), Query Frame = 1
Query:   19 MIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKD--MLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQ-YREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYK 1179
            M++ G  P  +LFH VL+A+   R +A +  RVLALMRQ   +PD  AYN+ALRSQ     A +LLK+  M++AGVAP + T                           + SFV+V  WNMLLHAI+ASGNPQSALQK AEMT+RGLAPDA+T SLLLAAHAALG++ EVDS+VSQMSASG+E+APAY+RWV+EGYAQGGLM RAED LEA L  GT+HP +A ALL  +S A +  RV++WL+RLSA GH+  PG W+AAIDAAHKAGD D ADA W  A+ A G + Y+EMRR   G GWH++ ++   SRDA S VLD++ C +G ALAAL AEA +LRN SPSAFRY +MG R      V +++ +GM +LGLQ SEVPGA YFYK
Sbjct:    1 MVKCGHRPHISLFHLVLEAVAAKR-EAREAWRVLALMRQSGTKPDVTAYNWALRSQITLQSADSLLKEFQMVDAGVAPGKVT---------------------------DPSFVNVHMWNMLLHAIIASGNPQSALQKAAEMTQRGLAPDAVTHSLLLAAHAALGDQTEVDSLVSQMSASGVEIAPAYHRWVIEGYAQGGLMLRAEDTLEAALMSGTFHPDMAIALLWKYSKAGNLSRVLFWLQRLSALGHKLHPGMWSAAIDAAHKAGDTDTADALWRDAEAAGGMRLYKEMRRTSRGGGWHMVRDKPPRSRDAGSTVLDVTICGVGVALAALRAEAHDLRNKSPSAFRYVFMGTRM--PLLVKNEVIDGMHELGLQVSEVPGAAYFYK 360          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A836C9W1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W1_9STRA)

HSP 1 Score: 358 bits (918), Expect = 1.140e-117
Identity = 189/282 (67.02%), Postives = 225/282 (79.79%), Query Frame = 1
Query:   88 RSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQ-YREMRRRRGGVGWHVLHN 930
            R Q+  V  +LALMRQ   +PD  AYN ALR+Q     A  LLK+M++AGVAPDR TYMAMLR CRMSR+MPRALE+FA+MEA N SFV+V  WNMLL AI+ASG+PQSALQK  EMT+RG+APD+IT SLLLAAHAALG+ A+VDS+VSQMSASG+E+ PAYYRWV+EGYAQGGLMQRAED LEA LT GT+ P +A ALL  +SNA +  RV++WL+RLSA+GH+P P  WNAAIDAAHKAGD D ADA W  A+ A G   Y+ MRR +GGVGWHV+ +
Sbjct:  123 RYQSRHVLHLLALMRQSGTKPDVTAYNLALRAQTRLQSADWLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVNVHMWNMLLRAIIASGDPQSALQKATEMTQRGVAPDSITYSLLLAAHAALGDEAKVDSLVSQMSASGVEIPPAYYRWVIEGYAQGGLMQRAEDTLEATLTSGTFRPDMAIALLWKYSNAGNLSRVLFWLQRLSASGHKPNPSMWNAAIDAAHKAGDTDTADALWRDAEAAGGLGVYKGMRRNKGGVGWHVVRD 404          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A836CAH1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH1_9STRA)

HSP 1 Score: 270 bits (690), Expect = 4.330e-86
Identity = 143/209 (68.42%), Postives = 166/209 (79.43%), Query Frame = 1
Query:   19 MIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEA 645
            M+  G  P  +LFH VL+AL   R  A +  RVLALM+Q   QPD  AYN ALR+Q     A +LLK+M+EAGVAPDR TY AMLR CRMSR++ RALE+F +MEA+N SFVDV TWNMLLHAI+ASGNPQSALQK A+M +R LAPDA TCSLLLAAHAALG++ EVD +VSQMSASG+E+ PAYY WV+EGYAQGGLMQRAED LEA
Sbjct:    1 MVEGGHRPHISLFHLVLEALAAKRD-AREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 208          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835YGC8_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.780e-63
Identity = 117/181 (64.64%), Postives = 142/181 (78.45%), Query Frame = 1
Query:   19 MIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGME 561
            M++ G  P  ++FH VL+AL +      +   VLA+MRQ   QPDA AY++ALR Q +   A ALLK+M+ AGVAPD  TY+AMLR+CR+SR+MPRALE+FAEMEA + SFV+V TWN+LL AIVASGNPQSAL K AEMT+RGLAPDA T SLLLAAHAALG++A+VDS VSQM ASGME
Sbjct:    1 MVKGGHRPHISIFHLVLKALASKHG-GKEAWHVLAIMRQSGTQPDATAYSWALRQQVSLQAADALLKEMVTAGVAPDSGTYIAMLRMCRISRDMPRALELFAEMEATDPSFVNVHTWNLLLLAIVASGNPQSALGKAAEMTQRGLAPDAATHSLLLAAHAALGDQAKVDSAVSQMRASGME 180          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835YH11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH11_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.230e-59
Identity = 115/199 (57.79%), Postives = 136/199 (68.34%), Query Frame = 1
Query:  616 MQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQ-YREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSEAPPRQPAG 1209
            MQRAEDALEA LTR  + P++A  LLR +  A +  R++YW++RLSA+G +  PG WNAAIDAAHKAGDAD ADA W  A  A G   Y+EMRR   G GW +  ++ A SRDAAS VLDLSSCS   ALAAL AEARELR G PSAFRY +MG R     A+  ++ EGMR LGL  S V GA YFY+   P  QP+G
Sbjct:    1 MQRAEDALEAALTRRIFQPNMAVTLLREYGKAGNLSRMLYWVQRLSASGRKLTPGIWNAAIDAAHKAGDADTADALWRDAAAAGGMGLYKEMRRINRGAGWRMASDQPARSRDAASTVLDLSSCSGAVALAALRAEARELRLGPPSAFRYVFMGTRPPSRDAIVAELNEGMRTLGLHMSAVRGAAYFYRIVVPASQPSG 199          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835Z2X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X8_9STRA)

HSP 1 Score: 203 bits (517), Expect = 9.880e-58
Identity = 145/395 (36.71%), Postives = 211/395 (53.42%), Query Frame = 1
Query:   19 MIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRS----QANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEV-APAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQ-YREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSE 1185
            +++ G  P   +FH VL+AL+  ++    +  V++L+R+    PD+ AY YALR+      +A     LL++M +AG+  D DT+ A L     SR+  RAL++FAE EA +   + V  WN LL  +V S  P+ A+ K AEM  RGL  +A T + LL A+A L + A+V+++ + M A+G+ + A   YR VV GYA GG +Q AE+A EA    G   P +  A++R    A D  R   WLRR  + G  P   AW+ A++ AH+AGDA AADA W  A+ A     Y+ M   RG     V  ++ +  R   ++ LDLS C +G A  A  A AR+LR   P A  Y Y G        +   +   MRD G + S+  G    +K+E
Sbjct:    2 IVQQGHRPDIRVFHIVLEALSAAKAMPAALN-VMSLLRRSGTPPDSRAYTYALRACGGGAQSAQKVNQLLQEMADAGLTHDEDTFGAALLTFGHSRSWQRALDLFAETEATHPHLLTVDAWNRLLAVLVYSNEPERAVAKAAEMVERGLDLNADTYAQLLGAYALLADDAKVEALTAGMRAAGVPLTAECRYR-VVRGYAMGGHLQHAENAFEAAAASGDAEPTMVKAMMRGCRRARDAQRAERWLRRALSMGLAPTASAWHLAVETAHEAGDAGAADALWRDAEAAGALSLYKAMWTFRGSNTLVVDVDQLSLLRHPLASALDLSGCDVGVASTAARAAARDLRRAPPPAVMYIYTGRSNPKQDEIAQAVTAIMRDDGARLSKEAGRGDIWKAE 394          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835YLB5_9STRA (PPC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 7.100e-55
Identity = 136/348 (39.08%), Postives = 190/348 (54.60%), Query Frame = 1
Query:  169 YALRSQANAGF------AGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPAS-GTQYREMRRRRGGV--GWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSE 1185
            +ALRS   AG       AG LL+DM EAG+  D+ ++ A L  CR SR+  RAL +FAE++A +   V V  WN LL  +V+S  P+ A+    +M  RG    A T SL+L A A+LG+  ++ ++VS+M A+ M++ P     ++ GYA  G  + AE ALEA +  G   PH+   LLRA  +  D  R  +WL+R  +    P    W+ A++ AH AGDADAADA W  AQ A   + Y  MR +  GV   + V  +  +  R+   + LD+SSCS G A AAL A AREL    P AFRY + GA  R    V +     MR+ G+   +V G    +K+E
Sbjct:  140 HALRSCEGAGGKQAMLRAGQLLQDMTEAGLISDQPSFAAALLACRFSRSWQRALGLFAELDANHPDLVTVDMWNRLLDVLVSSSQPKQAIANAVQMAERGFLFGAGTYSLVLGACASLGDHNKLAALVSEMQAADMQLTPVCRFQIISGYASSGCQRHAEKALEAAVKHGDAQPHMFMPLLRACRSMRDVSRARHWLQRSLSLSFAPTADMWHEAVEMAHAAGDADAADALWRDAQAARIPSLYNVMRMQSVGVVQKFFVSFDEPSLLREPHHSALDVSSCSRGVAHAALRAAARELSQARPPAFRYFFTGAFNRKQNKVAEAAVAIMREAGVWVLKVAGNPGLWKAE 487          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A836CIY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY5_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.560e-50
Identity = 136/377 (36.07%), Postives = 193/377 (51.19%), Query Frame = 1
Query:   67 LQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFA---GALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQ-YREMRRRRGGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSE 1185
            +QAL+  R+ +  +  +++L+R+    PD  AY YA R+   A  A     LL++M +A                        AL++FAE EA +   + V  WN LL  +  S   + A+ K AEM  RGLA DA T + LL A+A L + A+++++ + M A+G+ +  A     V GYA GG +QRAEDA EA +  G   P +  A+LR    A D  R   WLRR  + G  P   AW+ A++ AH+AGDADAADA W  A+ A     Y+ M    GG G  V  N+ +  R   ++ LDLS C  G A AA  A AR+LR   P A RY + G+ +    A+   +   MRD G Q S+  G    +K+E
Sbjct:  102 VQALSPTRAMSAALI-MMSLLRRSGTPPDRGAYTYADRALGGAQSAQKADQLLQEMADAXXXXXXXXXXXXXXXXXXXXXXXXALDLFAETEATHPHLLTVDAWNQLLAVLNYSNELERAVAKAAEMVERGLALDAETYAQLLGAYALLADDAKLEALAAGMRAAGVPLTAACRYCGVRGYALGGHLQRAEDAFEAAVASGDADPKMVKAMLRGCRRARDAQRAERWLRRALSLGLAPTASAWHLAVETAHEAGDADAADALWREAEAAGALSLYKAMSTLHGGCGRAVDVNQPSLLRRLHASALDLSRCDAGLAHAAARAAARDLRRAPPPANRYIFTGSSKPKQVAIAQAVTAIMRDAGAQVSKESGRGNIWKAE 477          
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.680e-48
Identity = 125/324 (38.58%), Postives = 171/324 (52.78%), Query Frame = 1
Query:  211 LLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEAMLTRGTYHP---HLAAALLRAHSNAADQPRVMYWLRRLSAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQYREMRR-----RRGGVG-WHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPSAFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEV 1155
            +L  M  AGVAPDR T++ +LR CR++++  RA+++F  MEA +  F DVQ WN LL  + A   P+S L+  A M  RG+ P   T + +L AHA  G+   V S++S M A G +V  A    + +GYA GG    AE+ALEA+L      P   +   A + A   A D PR++ WLRRL + G  P P  W+ A+ AAH+ GDA AADA W   + A G  Y  + +     + G    W V  +  A    A  A LDLSSC IG   AAL AE  +LR   P A R  + GA      A+   I   M + G+ A++ 
Sbjct:   24 ILASMAAAGVAPDRHTFVGVLRACRLAQDWRRAIDVFFNMEANHPEFADVQMWNRLLKVVYACAAPESTLEVAALMAERGVVPITATYNAVLGAHAMRGDSVAVQSVLSSMRAVGEQVTFATLATLAKGYAHGGHWDAAEEALEAVLNSDRPTPVRVNAVTAFVHACGRARDLPRIVRWLRRLPSLGLAPTPRMWDVAVSAAHEGGDAAAADAMW---REAGGAAYFGLYKVLVPLKEGAKSEWTVQVDHPAQQEHAPGAALDLSSCRIGAVHAALRAEVTQLRAQPPPAVRSFFSGAGTPELLAIAAAIGAVMEEAGMSANKA 344          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338264 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YKZ3_9STRA1.850e-285100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL26_9STRA5.490e-13056.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9W1_9STRA1.140e-11767.02PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CAH1_9STRA4.330e-8668.42PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835YGC8_9STRA6.780e-6364.64PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835YH11_9STRA1.230e-5957.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2X8_9STRA9.880e-5836.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLB5_9STRA7.100e-5539.08PPC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CIY5_9STRA2.560e-5036.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0G4_9STRA1.680e-4838.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_90contigContig_90:380198..381463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338264|MIX47027_25_49
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
DescriptionPentatricopeptide repeat-containing protein At3g09650
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37R8Y@33090|Viridiplantae,3G8FN@35493|Streptophyta
Evalue7.78e-07
Seed ortholog161934.XP_010667236.1
Hectar predicted targeting categorymitochondrion
TranscriptId338586
TrackFilteredModels1
ProteinId338264
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338264gene_11446Tribonema minus UTEX_B_3156 geneContig_90 380198..381463 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11446_1exon_11446_1Tribonema minus UTEX_B_3156 exonContig_90 380198..381463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11446CDS_11446Tribonema minus UTEX_B_3156 CDSContig_90 380198..381409 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11446UTR3_11446Tribonema minus UTEX_B_3156 three_prime_UTRContig_90 381410..381463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338264Trimin1|338264|MIX47027_25_49Tribonema minus UTEX_B_3156 polypeptideContig_90 380198..381409 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11446 ID=mRNA_11446|Name=jgi.p|Trimin1|338264|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1266bp|location=Sequence derived from alignment at Contig_90:380198..381463+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGACTCTGAGCAGTATGATCAGGCATGGGTTTTACCCACAGAGAGC
ACTGTTTCACTTTGTCTTGCAGGCCTTGACCAACAACCGGTCTCAAGCTG
GACAGGTGCGGCGTGTGCTGGCACTCATGAGGCAACCTCGAATTCAGCCA
GACGCGGCAGCATACAATTATGCTCTGCGTTCCCAGGCCAACGCGGGCTT
TGCTGGTGCACTGCTGAAGGACATGCTGGAAGCTGGCGTAGCTCCAGACA
GGGACACGTACATGGCGATGCTGCGCGTGTGCCGCATGTCGCGTAACATG
CCCCGTGCACTGGAGATCTTTGCAGAGATGGAGGCAGCCAACGCCAGCTT
CGTCGACGTGCAGACGTGGAACATGCTGCTGCACGCAATCGTTGCAAGCG
GCAATCCACAATCAGCACTTCAGAAGGTTGCGGAGATGACACGGCGCGGC
CTTGCGCCAGATGCGATCACGTGCTCCCTGCTGCTGGCAGCTCACGCAGC
CCTCGGTAACCGCGCCGAGGTGGACAGCATAGTCTCTCAGATGAGCGCCT
CAGGAATGGAGGTCGCGCCCGCGTACTACCGCTGGGTCGTAGAGGGCTAC
GCGCAGGGCGGGCTCATGCAGCGGGCGGAGGACGCACTGGAGGCGATGCT
GACGCGCGGGACCTATCATCCACATCTGGCCGCTGCGCTGCTGCGCGCGC
ACAGTAACGCAGCAGACCAGCCGCGGGTGATGTACTGGCTACGGCGCTTG
TCAGCGGCGGGCCACGAACCGCCCCCGGGCGCGTGGAATGCGGCCATAGA
TGCAGCGCACAAGGCGGGTGACGCGGATGCAGCGGATGCGGCGTGGTGCG
CAGCCCAGCCTGCGAGCGGAACGCAGTACAGGGAGATGCGGAGGAGGAGA
GGGGGCGTGGGGTGGCACGTGCTCCACAATCGGCGCGCACACTCGCGGGA
TGCCGCCAGCGCGGTGCTGGATCTCAGCAGCTGCAGCATCGGGTGGGCGC
TGGCGGCGCTTTGCGCGGAGGCTCGTGAGCTGCGCAACGGGTCGCCCTCG
GCGTTCAGGTATGCATACATGGGGGCGCGCCGGCGTCCGCATGCTGCGGT
TTTTGATCAAATTTTCGAGGGCATGCGTGACCTGGGGTTGCAGGCGTCTG
AGGTACCGGGAGCCACATATTTTTACAAGAGCGAGGCACCACCAAGGCAG
CCAGCAGGATGAGAGCAAATGCAGAGGTTGCAGCCGTCAATGCATGCGTC
CTTTAAGAGGCCACTG
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protein sequence of jgi.p|Trimin1|338264

>Trimin1|338264|MIX47027_25_49 ID=Trimin1|338264|MIX47027_25_49|Name=jgi.p|Trimin1|338264|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=404bp
MGTLSSMIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQP
DAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNM
PRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRG
LAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGY
AQGGLMQRAEDALEAMLTRGTYHPHLAAALLRAHSNAADQPRVMYWLRRL
SAAGHEPPPGAWNAAIDAAHKAGDADAADAAWCAAQPASGTQYREMRRRR
GGVGWHVLHNRRAHSRDAASAVLDLSSCSIGWALAALCAEARELRNGSPS
AFRYAYMGARRRPHAAVFDQIFEGMRDLGLQASEVPGATYFYKSEAPPRQ
PAG*
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mRNA from alignment at Contig_90:380198..381463+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11446 ID=mRNA_11446|Name=jgi.p|Trimin1|338264|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1266bp|location=Sequence derived from alignment at Contig_90:380198..381463+ (Tribonema minus UTEX_B_3156 )
ATGGGGACTCTGAGCAGTATGATCAGGCATGGGTTTTACCCACAGAGAGC ACTGTTTCACTTTGTCTTGCAGGCCTTGACCAACAACCGGTCTCAAGCTG GACAGGTGCGGCGTGTGCTGGCACTCATGAGGCAACCTCGAATTCAGCCA GACGCGGCAGCATACAATTATGCTCTGCGTTCCCAGGCCAACGCGGGCTT TGCTGGTGCACTGCTGAAGGACATGCTGGAAGCTGGCGTAGCTCCAGACA GGGACACGTACATGGCGATGCTGCGCGTGTGCCGCATGTCGCGTAACATG CCCCGTGCACTGGAGATCTTTGCAGAGATGGAGGCAGCCAACGCCAGCTT CGTCGACGTGCAGACGTGGAACATGCTGCTGCACGCAATCGTTGCAAGCG GCAATCCACAATCAGCACTTCAGAAGGTTGCGGAGATGACACGGCGCGGC CTTGCGCCAGATGCGATCACGTGCTCCCTGCTGCTGGCAGCTCACGCAGC CCTCGGTAACCGCGCCGAGGTGGACAGCATAGTCTCTCAGATGAGCGCCT CAGGAATGGAGGTCGCGCCCGCGTACTACCGCTGGGTCGTAGAGGGCTAC GCGCAGGGCGGGCTCATGCAGCGGGCGGAGGACGCACTGGAGGCGATGCT GACGCGCGGGACCTATCATCCACATCTGGCCGCTGCGCTGCTGCGCGCGC ACAGTAACGCAGCAGACCAGCCGCGGGTGATGTACTGGCTACGGCGCTTG TCAGCGGCGGGCCACGAACCGCCCCCGGGCGCGTGGAATGCGGCCATAGA TGCAGCGCACAAGGCGGGTGACGCGGATGCAGCGGATGCGGCGTGGTGCG CAGCCCAGCCTGCGAGCGGAACGCAGTACAGGGAGATGCGGAGGAGGAGA GGGGGCGTGGGGTGGCACGTGCTCCACAATCGGCGCGCACACTCGCGGGA TGCCGCCAGCGCGGTGCTGGATCTCAGCAGCTGCAGCATCGGGTGGGCGC TGGCGGCGCTTTGCGCGGAGGCTCGTGAGCTGCGCAACGGGTCGCCCTCG GCGTTCAGGTATGCATACATGGGGGCGCGCCGGCGTCCGCATGCTGCGGT TTTTGATCAAATTTTCGAGGGCATGCGTGACCTGGGGTTGCAGGCGTCTG AGGTACCGGGAGCCACATATTTTTACAAGAGCGAGGCACCACCAAGGCAG CCAGCAGGATGAGAGCAAATGCAGAGGTTGCAGCCGTCAATGCATGCGTC CTTTAAGAGGCCACTG
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Coding sequence (CDS) from alignment at Contig_90:380198..381463+

>mRNA_11446 ID=mRNA_11446|Name=jgi.p|Trimin1|338264|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1212bp|location=Sequence derived from alignment at Contig_90:380198..381463+ (Tribonema minus UTEX_B_3156 )
ATGGGGACTCTGAGCAGTATGATCAGGCATGGGTTTTACCCACAGAGAGC
ACTGTTTCACTTTGTCTTGCAGGCCTTGACCAACAACCGGTCTCAAGCTG
GACAGGTGCGGCGTGTGCTGGCACTCATGAGGCAACCTCGAATTCAGCCA
GACGCGGCAGCATACAATTATGCTCTGCGTTCCCAGGCCAACGCGGGCTT
TGCTGGTGCACTGCTGAAGGACATGCTGGAAGCTGGCGTAGCTCCAGACA
GGGACACGTACATGGCGATGCTGCGCGTGTGCCGCATGTCGCGTAACATG
CCCCGTGCACTGGAGATCTTTGCAGAGATGGAGGCAGCCAACGCCAGCTT
CGTCGACGTGCAGACGTGGAACATGCTGCTGCACGCAATCGTTGCAAGCG
GCAATCCACAATCAGCACTTCAGAAGGTTGCGGAGATGACACGGCGCGGC
CTTGCGCCAGATGCGATCACGTGCTCCCTGCTGCTGGCAGCTCACGCAGC
CCTCGGTAACCGCGCCGAGGTGGACAGCATAGTCTCTCAGATGAGCGCCT
CAGGAATGGAGGTCGCGCCCGCGTACTACCGCTGGGTCGTAGAGGGCTAC
GCGCAGGGCGGGCTCATGCAGCGGGCGGAGGACGCACTGGAGGCGATGCT
GACGCGCGGGACCTATCATCCACATCTGGCCGCTGCGCTGCTGCGCGCGC
ACAGTAACGCAGCAGACCAGCCGCGGGTGATGTACTGGCTACGGCGCTTG
TCAGCGGCGGGCCACGAACCGCCCCCGGGCGCGTGGAATGCGGCCATAGA
TGCAGCGCACAAGGCGGGTGACGCGGATGCAGCGGATGCGGCGTGGTGCG
CAGCCCAGCCTGCGAGCGGAACGCAGTACAGGGAGATGCGGAGGAGGAGA
GGGGGCGTGGGGTGGCACGTGCTCCACAATCGGCGCGCACACTCGCGGGA
TGCCGCCAGCGCGGTGCTGGATCTCAGCAGCTGCAGCATCGGGTGGGCGC
TGGCGGCGCTTTGCGCGGAGGCTCGTGAGCTGCGCAACGGGTCGCCCTCG
GCGTTCAGGTATGCATACATGGGGGCGCGCCGGCGTCCGCATGCTGCGGT
TTTTGATCAAATTTTCGAGGGCATGCGTGACCTGGGGTTGCAGGCGTCTG
AGGTACCGGGAGCCACATATTTTTACAAGAGCGAGGCACCACCAAGGCAG
CCAGCAGGATGA
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