mRNA_11397 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170851
Unique NamemRNA_11397
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170851 vs. uniprot
Match: A0A836C8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8V5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.550e-32
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1 
Query:    1 MEPPDPNDPEPAKTETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPPAPPSADSTRTSPLADDVLAPLMMLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPVPLTTCTLPPPVLPAPPAXXXXXXXXXXXXXAXTAMAXXDMDSXXXXXXXXXXXXXXXXXXXXXXXXEPPMAAPLXXXXXXXXXXXXXXXXXXXXXLAXAAPLAPDTMLTAPLRPLAPVPVAR 942
            MEPPDPNDPEPAKTETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPPAPPSADSTRTSPLADDVLAPLMMLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPVPLTTCTLPPPVLPAPPAXXXXXXXXXXXXXAXTAMAXXDMDSXXXXXXXXXXXXXXXXXXXXXXXXEPPMAAPLXXXXXXXXXXXXXXXXXXXXXLAXAAPLAPDTMLTAPLRPLAPVPVAR
Sbjct:    1 MEPPDPNDPEPAKTETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPPAPPSADSTRTSPLADDVLAPLMMLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPVPLTTCTLPPPVLPAPPAXXXXXXXXXXXXXAXTAMAXXDMDSXXXXXXXXXXXXXXXXXXXXXXXXEPPMAAPLXXXXXXXXXXXXXXXXXXXXXLAXAAPLAPDTMLTAPLRPLAPVPVAR 314
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170851 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8V5_9STRA1.550e-32100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:676589..677881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170851|e_gw1.76.3.1
Hectar predicted targeting categoryother localisation
TranscriptId171173
TrackFilteredModels1
ProteinId170851
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170851gene_11397Tribonema minus UTEX_B_3156 geneContig_76 676589..677881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170851Trimin1|170851|e_gw1.76.3.1Tribonema minus UTEX_B_3156 polypeptideContig_76 676589..677881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11397_2exon_11397_2Tribonema minus UTEX_B_3156 exonContig_76 676589..677284 -
exon_11397_1exon_11397_1Tribonema minus UTEX_B_3156 exonContig_76 677633..677881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11397CDS_11397Tribonema minus UTEX_B_3156 CDSContig_76 677633..677881 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11397 ID=mRNA_11397|Name=jgi.p|Trimin1|170851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=945bp|location=Sequence derived from alignment at Contig_76:676589..677881- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCACCAGACCCGAATGACCCTGAACCCGCCAAAACTGAAACATC
TCCGCCTGATGCAGATGCCCCAGAGCTCAGCAACACGCTTCCTCCAGTGC
CAGATGTACCTGTGCCGACAGTGAGGCTCAAGAGGCCACCACCGCCATTT
GCAGCACTGCCGCTGCTGATCAGAACGGATCCGCTGGTGCCAGATGATGA
CATGCCAGTGCTGAAAGAGACAGCACCACTCATGCCCGCTGGCCCGCCTG
CTCCGCCATCTGCAGACAGCACACGCACTTCCCCACTAGCAGACGACGTG
CTTGCTCCGCTGATGATGCTGACTGCACCTCCAGTGGAGGCAGTGCTAGA
CCCTGCACTGACTGCTACCGAGCCGCCATTGCCGCTTGTGCCACTGCCGA
CAGACAGCAGCAGACTGCCACCACTGCCGGAAGCGGATGACCCAGTGCCA
ATGAGCACAGATCCAGTGCTGGCAGCACTGCTGCTGCCAGAGCCAAGTGT
CACTGTGCCACTCATGCCAGCAGCTGTGGGTGCAGAAGCAACAGAAACTG
CGCCGCTTGCCCCAGAGAGCCCTGTGCCACTGACCACCTGCACATTGCCG
CCACCAGTGCTACCAGCACCACCAGCAAGGAGCACTGCGCCGCCTGTGCC
GCTTGATCCTGTACCTGCCACAACCGCTATGGCACCACCTGACATGGATT
CCCCTGACTGCACCAGCACGTCTCCACCTGTGCCAGAGCTGCCTGGGCCA
ACCACCAGGCTCAGCTTCCCGCCAGAACCTCCCATGGCTGCGCCGCTGCC
GATTGACACAGCGCCGCTAGTGCCAGACTGGGATGTGCCAGTGCTGAGCA
CAAGCTCGCCGCTTGCCCCGGCAGCTCCACTTGCACCAGATACGATGCTA
ACAGCACCGCTGCGGCCACTCGCTCCGGTGCCAGTCGCCAGGTGA
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protein sequence of jgi.p|Trimin1|170851

>Trimin1|170851|e_gw1.76.3.1 ID=Trimin1|170851|e_gw1.76.3.1|Name=jgi.p|Trimin1|170851|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=315bp
MEPPDPNDPEPAKTETSPPDADAPELSNTLPPVPDVPVPTVRLKRPPPPF
AALPLLIRTDPLVPDDDMPVLKETAPLMPAGPPAPPSADSTRTSPLADDV
LAPLMMLTAPPVEAVLDPALTATEPPLPLVPLPTDSSRLPPLPEADDPVP
MSTDPVLAALLLPEPSVTVPLMPAAVGAEATETAPLAPESPVPLTTCTLP
PPVLPAPPARSTAPPVPLDPVPATTAMAPPDMDSPDCTSTSPPVPELPGP
TTRLSFPPEPPMAAPLPIDTAPLVPDWDVPVLSTSSPLAPAAPLAPDTML
TAPLRPLAPVPVAR*
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mRNA from alignment at Contig_76:676589..677881-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11397 ID=mRNA_11397|Name=jgi.p|Trimin1|170851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1293bp|location=Sequence derived from alignment at Contig_76:676589..677881- (Tribonema minus UTEX_B_3156 )
ATGGAACCACCAGACCCGAATGACCCTGAACCCGCCAAAACTGAAACATC
TCCGCCTGATGCAGATGCCCCAGAGCTCAGCAACACGCTTCCTCCAGTGC
CAGATGTACCTGTGCCGACAGTGAGGCTCAAGAGGCCACCACCGCCATTT
GCAGCACTGCCGCTGCTGATCAGAACGGATCCGCTGGTGCCAGATGATGA
CATGCCAGTGCTGAAAGAGACAGCACCACTCATGCCCGCTGGCCCGCCTG
TGCCAGTGCCGATGCTGATGTCGCCACTGCTGCCAGATGCGCCAGCACCG
CTGGTGACCTCAATCCCTCCACCCACAGATCCTGACCCTGATACCAGTGA
TACAGCACCACCAGTGCCGCCTGCGCTGCTTCCTGCCCCTGCAGACATGG
TCAATGCACCACCAGTCTCTGACTGCCCGGCACTGAGGACTACCTGGCCA
CCTGTGCCGGTGGTACCACTGCCTACCGTCAGGCTCAGGTCTCCTCCAAC
TCCATCGGTGGACGACCCGCTACCTACCAGCAGAGAGCCAGTGTTGCCGG
TCGCTGATGCGCCTGAGCTGAAGACGAGGGAACCGCTACCGGCGGAGGCT
CCGCCATCTGCAGACAGCACACGCACTTCCCCACTAGCAGACGACGTGCT
TGCTCCGCTGATGATGCTGACTGCACCTCCAGTGGAGGCAGTGCTAGACC
CTGCACTGACTGCTACCGAGCCGCCATTGCCGCTTGTGCCACTGCCGACA
GACAGCAGCAGACTGCCACCACTGCCGGAAGCGGATGACCCAGTGCCAAT
GAGCACAGATCCAGTGCTGGCAGCACTGCTGCTGCCAGAGCCAAGTGTCA
CTGTGCCACTCATGCCAGCAGCTGTGGGTGCAGAAGCAACAGAAACTGCG
CCGCTTGCCCCAGAGAGCCCTGTGCCACTGACCACCTGCACATTGCCGCC
ACCAGTGCTACCAGCACCACCAGCAAGGAGCACTGCGCCGCCTGTGCCGC
TTGATCCTGTACCTGCCACAACCGCTATGGCACCACCTGACATGGATTCC
CCTGACTGCACCAGCACGTCTCCACCTGTGCCAGAGCTGCCTGGGCCAAC
CACCAGGCTCAGCTTCCCGCCAGAACCTCCCATGGCTGCGCCGCTGCCGA
TTGACACAGCGCCGCTAGTGCCAGACTGGGATGTGCCAGTGCTGAGCACA
AGCTCGCCGCTTGCCCCGGCAGCTCCACTTGCACCAGATACGATGCTAAC
AGCACCGCTGCGGCCACTCGCTCCGGTGCCAGTCGCCAGGTGA
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Coding sequence (CDS) from alignment at Contig_76:676589..677881-

>mRNA_11397 ID=mRNA_11397|Name=jgi.p|Trimin1|170851|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=945bp|location=Sequence derived from alignment at Contig_76:676589..677881- (Tribonema minus UTEX_B_3156 )
ATGGAACCACCAGACCCGAATGACCCTGAACCCGCCAAAACTGAAACATC
TCCGCCTGATGCAGATGCCCCAGAGCTCAGCAACACGCTTCCTCCAGTGC
CAGATGTACCTGTGCCGACAGTGAGGCTCAAGAGGCCACCACCGCCATTT
GCAGCACTGCCGCTGCTGATCAGAACGGATCCGCTGGTGCCAGATGATGA
CATGCCAGTGCTGAAAGAGACAGCACCACTCATGCCCGCTGGCCCGCCTG
CTCCGCCATCTGCAGACAGCACACGCACTTCCCCACTAGCAGACGACGTG
CTTGCTCCGCTGATGATGCTGACTGCACCTCCAGTGGAGGCAGTGCTAGA
CCCTGCACTGACTGCTACCGAGCCGCCATTGCCGCTTGTGCCACTGCCGA
CAGACAGCAGCAGACTGCCACCACTGCCGGAAGCGGATGACCCAGTGCCA
ATGAGCACAGATCCAGTGCTGGCAGCACTGCTGCTGCCAGAGCCAAGTGT
CACTGTGCCACTCATGCCAGCAGCTGTGGGTGCAGAAGCAACAGAAACTG
CGCCGCTTGCCCCAGAGAGCCCTGTGCCACTGACCACCTGCACATTGCCG
CCACCAGTGCTACCAGCACCACCAGCAAGGAGCACTGCGCCGCCTGTGCC
GCTTGATCCTGTACCTGCCACAACCGCTATGGCACCACCTGACATGGATT
CCCCTGACTGCACCAGCACGTCTCCACCTGTGCCAGAGCTGCCTGGGCCA
ACCACCAGGCTCAGCTTCCCGCCAGAACCTCCCATGGCTGCGCCGCTGCC
GATTGACACAGCGCCGCTAGTGCCAGACTGGGATGTGCCAGTGCTGAGCA
CAAGCTCGCCGCTTGCCCCGGCAGCTCCACTTGCACCAGATACGATGCTA
ACAGCACCGCTGCGGCCACTCGCTCCGGTGCCAGTCGCCAGGTGA
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