mRNA_11395 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170900
Unique NamemRNA_11395
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170900 vs. uniprot
Match: A0A836C9K5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.490e-7
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -3 
Query:  662 ESAEMYQSAPAQLLSAALVQYASALVLPLRAVE 760
            ESAEMYQSAPAQLLSAAL QYASALVLPLRAVE
Sbjct:   75 ESAEMYQSAPAQLLSAALAQYASALVLPLRAVE 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170900 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9K5_9STRA2.490e-796.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:668369..669529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170900|e_gw1.76.17.1
Hectar predicted targeting categoryother localisation
TranscriptId171222
TrackFilteredModels1
ProteinId170900
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170900gene_11395Tribonema minus UTEX_B_3156 geneContig_76 668369..669529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170900Trimin1|170900|e_gw1.76.17.1Tribonema minus UTEX_B_3156 polypeptideContig_76 668369..669529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11395_2exon_11395_2Tribonema minus UTEX_B_3156 exonContig_76 668369..668629 -
exon_11395_1exon_11395_1Tribonema minus UTEX_B_3156 exonContig_76 669029..669529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11395CDS_11395Tribonema minus UTEX_B_3156 CDSContig_76 669029..669529 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11395 ID=mRNA_11395|Name=jgi.p|Trimin1|170900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=762bp|location=Sequence derived from alignment at Contig_76:668369..669529- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCACCGCTTGACGATTTGCCTGCTGTCAACCGCACTGCACCACC
AGCGCCAGAGTCACCGGTGCCCACAGCCAAACTAACAGCGCCCCCGCCTC
CTCCTGTGGCGCTGCCACTGCCGACAAGTACACCACCTGTGCTGCCAGAC
CTCGATGCGCCAGAGCTCAGCACCAGCTTGCCAGACATTGTGCCAGCAGC
AGATGCAACACTGACATCGCCGCTTGCCGCACTGTTGGATGAACCACTGC
TGAGGTTGACGTTGCCACCGTCGCCGCCGCTGCTGAATCCTGCAGTCAGC
TGCAGTGCGCCACCTGCACCGCTTGTGCCGCTGCCGACAGTCAGGCTCAA
GGCACCGCCCCTGCCGCCTGTGGCACCTCCTGTAGTGATGTCAACAGCAC
CGCTGTCGCCTGCACCAGAAGTACCGGACCGCAGAGCAAGGTTGCCGCTC
ACACCGCTTGAGCCACTGTCCCCGGAGGCCAAGCTGACAGAACCTGTTGT
TCTGCCATCGCCAGCTGTCACGCGGACACTGCCACCATCGCCGGCTATAC
CTGTGCCTGCTGCTATGCTGACGGCACCACCACTGGCGGACAGTCCTGCC
TCGATCATGACTGCACCTCCTTCACCAACAGTGCCGGACCCTACTGTCAG
GCTCAGCTCACCTCCACTGCCCGCAGTGGCAACACCAGTGCTGATGCGTA
CTGCACCAGTGCTGCCGACAGCAGCTGTGCCGGAGCTGACTGATACATCT
CCGCTGACTCCT
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protein sequence of jgi.p|Trimin1|170900

>Trimin1|170900|e_gw1.76.17.1 ID=Trimin1|170900|e_gw1.76.17.1|Name=jgi.p|Trimin1|170900|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp
MSPPLDDLPAVNRTAPPAPESPVPTAKLTAPPPPPVALPLPTSTPPVLPD
LDAPELSTSLPDIVPAADATLTSPLAALLDEPLLRLTLPPSPPLLNPAVS
CSAPPAPLVPLPTVRLKAPPLPPVAPPVVMSTAPLSPAPEVPDRRARLPL
TPLEPLSPEAKLTEPVVLPSPAVTRTLPPSPAIPVPAAMLTAPPLADSPA
SIMTAPPSPTVPDPTVRLSSPPLPAVATPVLMRTAPVLPTAAVPELTDTS
PLTP
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mRNA from alignment at Contig_76:668369..669529-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11395 ID=mRNA_11395|Name=jgi.p|Trimin1|170900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1161bp|location=Sequence derived from alignment at Contig_76:668369..669529- (Tribonema minus UTEX_B_3156 )
ATGTCACCACCGCTTGACGATTTGCCTGCTGTCAACCGCACTGCACCACC
AGCGCCAGAGTCACCGGTGCCCACAGCCAAACTAACAGCGCCCCCGCCTC
CTCCTGTGGCGCTGCCACTGCCGACAAGTACACCACCTGTGCTGCCAGAC
CTCGATGCGCCAGAGCTCAGCACCAGCTTGCCAGACATTGTGCCAGCAGC
AGATGCAACACTGACATCGCCGCTTGCCGCACTGTTGGATGAACCACTGC
TGAGGTTGACGTTGCCACCGTCGCCGCCGCTGCTGAATCCTGCAGTCAGC
TGCAGTGCGCCACCTGCACCGCTTGTGCCGCTGCCGACAGTCAGGCTCAA
GGCACCGCCCCTGCCGCCTGTGGCACCTCCTGTAGTGATGTCAACAGCAC
CGCTGTCGCCTGCACCAGAAGTACCGGACCGCAGAGCAAGGTTGCCGCTC
ACACCGCTTGAGCCACTGTCCCCGGAGGCCAAGCTGACAGAACCTGTTGT
TGTTGCTGATCCGTGAGCACTGCTGATTGACACAGCTCCACTTGAGATGC
CAGAGCCTGTCACCAGCCTTACTGCACCTCCAGCACCGCTCATGCCGCTT
CCTGCAGCAATGGTGACAGCACCACCGAGTGTGGACTGGCCTGCTTGTAC
AACAACACCTCCACCAGCACCTGACGTTCCTGAGCCAACAACAAGGCTCA
ACTGCCCGCCGGCCCCTTCACTAGCTGTGCCGCTGCCAATCAAGACAGAG
CCACTCGGCCCCGATGATGATGTCCCAGAGCTGAACACAAGGTTGCCACT
GGCGCCAGCTGCACTGCTGGACCCTGAAACAAGGCTGACTGCTCCGCTGT
TACCGGAGAATGCTGCACCACTTGCAAAGGACAAAGCGCCACCAGTGGAG
CTGCCATCGCCAGCTGTCACGCGGACACTGCCACCATCGCCGGCTATACC
TGTGCCTGCTGCTATGCTGACGGCACCACCACTGGCGGACAGTCCTGCCT
CGATCATGACTGCACCTCCTTCACCAACAGTGCCGGACCCTACTGTCAGG
CTCAGCTCACCTCCACTGCCCGCAGTGGCAACACCAGTGCTGATGCGTAC
TGCACCAGTGCTGCCGACAGCAGCTGTGCCGGAGCTGACTGATACATCTC
CGCTGACTCCT
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Coding sequence (CDS) from alignment at Contig_76:668369..669529-

>mRNA_11395 ID=mRNA_11395|Name=jgi.p|Trimin1|170900|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=762bp|location=Sequence derived from alignment at Contig_76:668369..669529- (Tribonema minus UTEX_B_3156 )
ATGTCACCACCGCTTGACGATTTGCCTGCTGTCAACCGCACTGCACCACC
AGCGCCAGAGTCACCGGTGCCCACAGCCAAACTAACAGCGCCCCCGCCTC
CTCCTGTGGCGCTGCCACTGCCGACAAGTACACCACCTGTGCTGCCAGAC
CTCGATGCGCCAGAGCTCAGCACCAGCTTGCCAGACATTGTGCCAGCAGC
AGATGCAACACTGACATCGCCGCTTGCCGCACTGTTGGATGAACCACTGC
TGAGGTTGACGTTGCCACCGTCGCCGCCGCTGCTGAATCCTGCAGTCAGC
TGCAGTGCGCCACCTGCACCGCTTGTGCCGCTGCCGACAGTCAGGCTCAA
GGCACCGCCCCTGCCGCCTGTGGCACCTCCTGTAGTGATGTCAACAGCAC
CGCTGTCGCCTGCACCAGAAGTACCGGACCGCAGAGCAAGGTTGCCGCTC
ACACCGCTTGAGCCACTGTCCCCGGAGGCCAAGCTGACAGAACCTGTTGT
TCTGCCATCGCCAGCTGTCACGCGGACACTGCCACCATCGCCGGCTATAC
CTGTGCCTGCTGCTATGCTGACGGCACCACCACTGGCGGACAGTCCTGCC
TCGATCATGACTGCACCTCCTTCACCAACAGTGCCGGACCCTACTGTCAG
GCTCAGCTCACCTCCACTGCCCGCAGTGGCAACACCAGTGCTGATGCGTA
CTGCACCAGTGCTGCCGACAGCAGCTGTGCCGGAGCTGACTGATACATCT
CCGCTGACTCCT
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