mRNA_1134 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136477
Unique NamemRNA_1134
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136477 vs. uniprot
Match: A0A835ZHC8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.970e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 CEADGCSLKPCFGFKCRSARFCLQHKLIGMIDTYHQLCK 117
            CEADGCSLKPCFGFKCRSARFCLQHKLIGMIDTYHQLCK
Sbjct:    1 CEADGCSLKPCFGFKCRSARFCLQHKLIGMIDTYHQLCK 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136477 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZHC8_9STRA4.970e-20100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1539657..1540193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136477|gw1.1.59.1
Hectar predicted targeting categoryother localisation
TranscriptId136799
TrackFilteredModels1
ProteinId136477
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136477gene_1134Tribonema minus UTEX_B_3156 geneContig_1 1539657..1540193 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1134_1exon_1134_1Tribonema minus UTEX_B_3156 exonContig_1 1539657..1540193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1134CDS_1134Tribonema minus UTEX_B_3156 CDSContig_1 1539657..1540193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136477Trimin1|136477|gw1.1.59.1Tribonema minus UTEX_B_3156 polypeptideContig_1 1539657..1540193 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1134 ID=mRNA_1134|Name=jgi.p|Trimin1|136477|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_1:1539657..1540193+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGAGGCAGACGGCTGTTCGCTCAAACCGTGCTTCGGCTTCAAATGCAG
GTCTGCTCGCTTCTGTTTGCAGCACAAGCTGATCGGCATGATCGACACTT
ATCACCAGCTATGCAAGCACGACAGCTGTTCCAGCAGGCCGTCCTTTGGC
TTCAAGGACGGGTCAGCTTGCTACTGTCGGAAGCACCGGCTACCCGGCAT
GCTCAACCTGTATGCCAAGAAGTGCGAAGCAGACGGCTGCTCGCTGGGGG
CGACATTTGGCTTCAAAGGCAGGTCGACTCGCTTCTGCAAGAAGCACCAC
CTGCCCGGCATGATCCTCGCGCACGCAAAGTTGTGCGAGGAGGACGGCTG
CTTGATCACGGCGACCTTCGGCTCCACGGGCGGGCGAAGTCGCTTCTGTA
AGCGGCATCGGCTGGCAGGCATGATTGACGTGCGCACCAAGAGGTGCGAG
GCGCACGGCTGCTTGCAGAGGCCGTCCTACCGCTTCGAAGGCAAACCGCG
TCAATTTTGTCTGGCGCACAAGCTACCCGGCATGATT
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protein sequence of jgi.p|Trimin1|136477

>Trimin1|136477|gw1.1.59.1 ID=Trimin1|136477|gw1.1.59.1|Name=jgi.p|Trimin1|136477|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp
CEADGCSLKPCFGFKCRSARFCLQHKLIGMIDTYHQLCKHDSCSSRPSFG
FKDGSACYCRKHRLPGMLNLYAKKCEADGCSLGATFGFKGRSTRFCKKHH
LPGMILAHAKLCEEDGCLITATFGSTGGRSRFCKRHRLAGMIDVRTKRCE
AHGCLQRPSYRFEGKPRQFCLAHKLPGMI
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mRNA from alignment at Contig_1:1539657..1540193+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1134 ID=mRNA_1134|Name=jgi.p|Trimin1|136477|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_1:1539657..1540193+ (Tribonema minus UTEX_B_3156 )
TGCGAGGCAGACGGCTGTTCGCTCAAACCGTGCTTCGGCTTCAAATGCAG
GTCTGCTCGCTTCTGTTTGCAGCACAAGCTGATCGGCATGATCGACACTT
ATCACCAGCTATGCAAGCACGACAGCTGTTCCAGCAGGCCGTCCTTTGGC
TTCAAGGACGGGTCAGCTTGCTACTGTCGGAAGCACCGGCTACCCGGCAT
GCTCAACCTGTATGCCAAGAAGTGCGAAGCAGACGGCTGCTCGCTGGGGG
CGACATTTGGCTTCAAAGGCAGGTCGACTCGCTTCTGCAAGAAGCACCAC
CTGCCCGGCATGATCCTCGCGCACGCAAAGTTGTGCGAGGAGGACGGCTG
CTTGATCACGGCGACCTTCGGCTCCACGGGCGGGCGAAGTCGCTTCTGTA
AGCGGCATCGGCTGGCAGGCATGATTGACGTGCGCACCAAGAGGTGCGAG
GCGCACGGCTGCTTGCAGAGGCCGTCCTACCGCTTCGAAGGCAAACCGCG
TCAATTTTGTCTGGCGCACAAGCTACCCGGCATGATT
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Coding sequence (CDS) from alignment at Contig_1:1539657..1540193+

>mRNA_1134 ID=mRNA_1134|Name=jgi.p|Trimin1|136477|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_1:1539657..1540193+ (Tribonema minus UTEX_B_3156 )
TGCGAGGCAGACGGCTGTTCGCTCAAACCGTGCTTCGGCTTCAAATGCAG
GTCTGCTCGCTTCTGTTTGCAGCACAAGCTGATCGGCATGATCGACACTT
ATCACCAGCTATGCAAGCACGACAGCTGTTCCAGCAGGCCGTCCTTTGGC
TTCAAGGACGGGTCAGCTTGCTACTGTCGGAAGCACCGGCTACCCGGCAT
GCTCAACCTGTATGCCAAGAAGTGCGAAGCAGACGGCTGCTCGCTGGGGG
CGACATTTGGCTTCAAAGGCAGGTCGACTCGCTTCTGCAAGAAGCACCAC
CTGCCCGGCATGATCCTCGCGCACGCAAAGTTGTGCGAGGAGGACGGCTG
CTTGATCACGGCGACCTTCGGCTCCACGGGCGGGCGAAGTCGCTTCTGTA
AGCGGCATCGGCTGGCAGGCATGATTGACGTGCGCACCAAGAGGTGCGAG
GCGCACGGCTGCTTGCAGAGGCCGTCCTACCGCTTCGAAGGCAAACCGCG
TCAATTTTGTCTGGCGCACAAGCTACCCGGCATGATT
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