mRNA_11338 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130111
Unique NamemRNA_11338
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A836CA19_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA19_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.270e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAAAF 156
            LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAAAF
Sbjct:    1 LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAAAF 52
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A6H5KC36_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC36_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.060e-13
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 HTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAAAF 156
            HTTGVGTASYASPEQL G RY  R+DL+SL  +LLEL   F T HERA AF
Sbjct:  971 HTTGVGTASYASPEQLQGRRYGLRSDLFSLGLVLLELCCCFTTTHERADAF 1021
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: F0YPG6_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPG6_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 8.670e-11
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 HTTGVGTASYASPEQLA-GARYDCRADLYSLAFMLLELAVPFATAHERAAAF 156
            HTTGVGTASYA+PEQLA GA Y    D++SL  +L ELA P  TA ERA AF
Sbjct:   18 HTTGVGTASYAAPEQLAKGAAYGAGVDIFSLGLVLFELATPLGTAMERAKAF 69
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A1W0A2Y0_9STRA (Heme regulated eukaryotic translation initiation factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2Y0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 HTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAAAF 156
            HT GVGT SYASPEQ+AG  YDC+ D +SL  +LLEL   F+T  ERA AF
Sbjct:  544 HTQGVGTMSYASPEQVAGTHYDCKVDSFSLGIILLELFCIFSTKMERARAF 594
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A7S1YS21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YS21_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.630e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAAAF 156
            LHT GVGT SYA+PEQ++  +Y   AD+YSL  +LLEL   F +AHERA+ F
Sbjct:  111 LHTGGVGTVSYAAPEQISSEKYGPEADIYSLGLILLELFSTFDSAHERASVF 162
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A6I9XGQ6_9SAUR (eukaryotic translation initiation factor 2-alpha kinase 1 n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9XGQ6_9SAUR)

HSP 1 Score: 60.1 bits (144), Expect = 6.850e-10
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHER 144
            +HT+GVGT  YASPEQL G+ YD ++D+YSL  +L EL  PF T  ER
Sbjct:   18 IHTSGVGTCLYASPEQLQGSHYDFKSDMYSLGVILFELFQPFGTEMER 65
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A024TET7_9STRA (PEK protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TET7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 HTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERA 147
            HT GVGT SYASPEQ+AG  YD + D +SL  +LLEL VPF T  ERA
Sbjct:  559 HTQGVGTMSYASPEQVAGTDYDAKVDSFSLGIILLELFVPFHTRMERA 606
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A7S2YH87_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YH87_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.320e-10
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    7 TTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHER 144
            T GVGTASYASPEQ++  RYD +AD++SL  +LLE+   F+T HER
Sbjct:   42 TAGVGTASYASPEQVSSKRYDTQADIFSLGLILLEMVCSFSTEHER 87
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A670KFR8_PODMU (Eukaryotic translation initiation factor 2 alpha kinase 1 n=7 Tax=Lacertinae TaxID=162266 RepID=A0A670KFR8_PODMU)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHER 144
            +HT+GVGT  YASPEQL G+ YD ++D+YSL  +LLEL  PF T  ER
Sbjct:  479 IHTSGVGTCLYASPEQLQGSHYDFKSDMYSLGVILLELFHPFGTEMER 526
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BLAST of jgi.p|Trimin1|130111 vs. uniprot
Match: A0A8B7Z5J6_ACAPL (eukaryotic translation initiation factor 2-alpha kinase 1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z5J6_ACAPL)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-9
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 HTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERA 147
            HT  VGT +YASPEQL G++YDC+AD++S   +L E+  PF+T  ERA
Sbjct:  129 HTVAVGTTTYASPEQLKGSKYDCKADMFSSGIILFEMFHPFSTQMERA 176
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130111 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA19_9STRA3.270e-28100.00Protein kinase domain-containing protein (Fragment... [more]
A0A6H5KC36_9PHAE7.060e-1370.59Protein kinase domain-containing protein n=2 Tax=E... [more]
F0YPG6_AURAN8.670e-1165.38Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
A0A1W0A2Y0_9STRA1.430e-1062.75Heme regulated eukaryotic translation initiation f... [more]
A0A7S1YS21_9STRA2.630e-1057.69Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6I9XGQ6_9SAUR6.850e-1058.33eukaryotic translation initiation factor 2-alpha k... [more]
A0A024TET7_9STRA9.320e-1064.58PEK protein kinase n=1 Tax=Aphanomyces invadans Ta... [more]
A0A7S2YH87_9STRA9.320e-1060.87Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A670KFR8_PODMU1.270e-960.42Eukaryotic translation initiation factor 2 alpha k... [more]
A0A8B7Z5J6_ACAPL1.570e-956.25eukaryotic translation initiation factor 2-alpha k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:154333..154488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130111|gw1.76.20.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04137,ko04138,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map04137,map04138,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG koko:K08860,ko:K16194,ko:K16196
EC2.7.11.1
Descriptioneukaryotic translation initiation factor 2alpha kinase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0124@1|root,KOG1035@2759|Eukaryota
Evalue1.16e-13
Seed ortholog2880.D8LBS3
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId130433
TrackFilteredModels1
ProteinId130111
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130111gene_11338Tribonema minus UTEX_B_3156 geneContig_76 154333..154488 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11338_1exon_11338_1Tribonema minus UTEX_B_3156 exonContig_76 154333..154488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11338CDS_11338Tribonema minus UTEX_B_3156 CDSContig_76 154333..154488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130111Trimin1|130111|gw1.76.20.1Tribonema minus UTEX_B_3156 polypeptideContig_76 154333..154488 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11338 ID=mRNA_11338|Name=jgi.p|Trimin1|130111|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_76:154333..154488+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCACACCACCGGCGTCGGCACGGCGTCGTACGCGAGCCCGGAGCAGCT
GGCGGGCGCGCGCTACGACTGCCGCGCGGACCTGTACTCGCTGGCCTTCA
TGCTGCTGGAGCTCGCGGTGCCGTTTGCGACGGCGCACGAGCGCGCCGCC
GCCTTC
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protein sequence of jgi.p|Trimin1|130111

>Trimin1|130111|gw1.76.20.1 ID=Trimin1|130111|gw1.76.20.1|Name=jgi.p|Trimin1|130111|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
LHTTGVGTASYASPEQLAGARYDCRADLYSLAFMLLELAVPFATAHERAA
AF
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mRNA from alignment at Contig_76:154333..154488+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11338 ID=mRNA_11338|Name=jgi.p|Trimin1|130111|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_76:154333..154488+ (Tribonema minus UTEX_B_3156 )
CTGCACACCACCGGCGTCGGCACGGCGTCGTACGCGAGCCCGGAGCAGCT
GGCGGGCGCGCGCTACGACTGCCGCGCGGACCTGTACTCGCTGGCCTTCA
TGCTGCTGGAGCTCGCGGTGCCGTTTGCGACGGCGCACGAGCGCGCCGCC
GCCTTC
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Coding sequence (CDS) from alignment at Contig_76:154333..154488+

>mRNA_11338 ID=mRNA_11338|Name=jgi.p|Trimin1|130111|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=156bp|location=Sequence derived from alignment at Contig_76:154333..154488+ (Tribonema minus UTEX_B_3156 )
CTGCACACCACCGGCGTCGGCACGGCGTCGTACGCGAGCCCGGAGCAGCT
GGCGGGCGCGCGCTACGACTGCCGCGCGGACCTGTACTCGCTGGCCTTCA
TGCTGCTGGAGCTCGCGGTGCCGTTTGCGACGGCGCACGAGCGCGCCGCC
GCCTTC
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