mRNA_11327 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131065
Unique NamemRNA_11327
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835YJU3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU3_9STRA)

HSP 1 Score: 534 bits (1376), Expect = 3.480e-192
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1
Query:    1 RKWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 777
            RKWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY
Sbjct:    1 RKWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 259          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835Z180_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z180_9STRA)

HSP 1 Score: 359 bits (921), Expect = 8.980e-123
Identity = 172/258 (66.67%), Postives = 211/258 (81.78%), Query Frame = 1
Query:    7 WALGPELGRGAFGQVHMGLDQVTGEFIAVKA-CLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 777
            W LG ++GRGAFGQVHMG +QVTGE IAV+  CL+S  + +  S+L NEI+LMQRC H NIV YLG EL  + V I+QEWV GGSITS+L++FGAF QPVT CYARQ+L G++YLHSCG VHRDLKGDNVL+SA G+VKIADFGTS+QL+DLQD+   LQGT +FMAPEVLQRQP GMAVD+WAFAC+VLQM TG+MPW+  LG +K + +LL++MQ+ R+PPLP DL+ ++R AL ACFSW+   RPTAK L+H GY
Sbjct:    6 WVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGY 263          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A836CHV3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHV3_9STRA)

HSP 1 Score: 351 bits (900), Expect = 1.730e-119
Identity = 175/264 (66.29%), Postives = 203/264 (76.89%), Query Frame = 1
Query:    4 KWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKG------DNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 777
            KW LGP + RGAFGQVHMGL+Q+TGE IAVKACL S G  +TA++L+NE+ LMQRCRH NIV YLG EL  + V I+QEWVPGGSI SIL NFG FT+ VT+CYA QIL G++YLHSCG VH DLKG      DNVLVS  G+VKIADFGTSEQ++DLQD    L GT +FMAPEVLQRQ  GMAVDVWAFAC++LQM TG+ PW S LG  K +  LL+ MQ HR PPLP D++P+MRA L  CFSW+PA RPTAK L+   Y
Sbjct:    5 KWKLGPCIVRGAFGQVHMGLNQMTGELIAVKACLTSFGNHNTANQLTNEVLLMQRCRHPNIVGYLGAELHGSWVCILQEWVPGGSICSILQNFGPFTERVTRCYAHQILQGIMYLHSCGIVHHDLKGEKQIAGDNVLVSTSGVVKIADFGTSEQVFDLQDRHTKLMGTPYFMAPEVLQRQRHGMAVDVWAFACVILQMLTGDAPWRSLLGTNKVVLALLQTMQTHRTPPLPPDISPSMRALLVECFSWDPAGRPTAKDLLQSSY 268          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835YKW2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW2_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.060e-79
Identity = 132/266 (49.62%), Postives = 174/266 (65.41%), Query Frame = 1
Query:    7 WALGPELGRGAFGQVHMGLDQVTGEFIAVKACLI---------SGGRSSTASK--LSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQA--HRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLV 765
            W LGP +GRG+FG+VHMGL+Q+TGE +A+K C +           G  + A +  L  E+ +M + +H N V+YLG E     VYI Q+W+PGGSI+++L+ FG  ++ VT+ YARQ L GL YLH+ G VHRDLKGDN+L+   G +KIADFGTS ++ D       + GT +FMAPE+L R   G+ VD+W FAC VLQM T   PW S       LP LL +MQA   RMPPLP D++P MRA L  CF W+PAERPT++ L+
Sbjct:    2 WCLGPTIGRGSFGEVHMGLNQITGELMAIKVCALPLCVAHSLRQPGAHACAKQHSLPREVFIMSQLQHRNTVRYLGAESDDDKVYIFQQWIPGGSISALLARFGPLSEHVTRLYARQALRGLAYLHANGIVHRDLKGDNLLIDGEGTIKIADFGTSARVPD-GAAAAEMLGTPYFMAPEMLLRCDHGLPVDIWGFACTVLQMLTNRRPWHSCRVTS--LPALLSVMQAALQRMPPLPPDMSPVMRAVLVNCFRWDPAERPTSRQLL 264          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835YLS7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS7_9STRA)

HSP 1 Score: 226 bits (575), Expect = 3.370e-70
Identity = 126/259 (48.65%), Postives = 159/259 (61.39%), Query Frame = 1
Query:    4 KWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAG--VYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDR--GHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAH-RMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLV 765
            KW LG  + RG+FG V+MGL++ TG  +AVK   + G       +L  E+ LM+   H NIV YLG E+      + I QEWVPGGS++S+L  FG F++ +T+ Y RQ L GL YLHS   VHRD+ G N+LV   G+VK+ADFG S QL D    R  G L+GT +FMAPEVLQR   GM VDVW+F   VLQM +G  PW S  G       L  L++   + PPLP DL+  +RA L  CF W+PAERPTA  L 
Sbjct:    6 KWKLGNRIARGSFGVVYMGLNEATGALMAVKVLSLRGS-DRDLHELHREMALMRAFSHPNIVSYLGAEIREEHDQLCIFQEWVPGGSVSSLLQRFGPFSEDMTRGYTRQALQGLAYLHSHHVVHRDINGSNILVDDHGVVKLADFGASLQLSDAAGSRADGALKGTPYFMAPEVLQRSAHGMPVDVWSFGGAVLQMVSGEPPWFSY-GVSTPYALLQALLERRGQTPPLPADLSAGLRAFLERCFRWDPAERPTAAELA 262          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835YTJ7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ7_9STRA)

HSP 1 Score: 225 bits (574), Expect = 8.090e-70
Identity = 122/257 (47.47%), Postives = 162/257 (63.04%), Query Frame = 1
Query:    4 KWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKR-LPRLLRLMQAH--RMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLV 765
            KW LGP +G G+FG VH GLDQVTG+ IAV +   +G R     ++  E+ +M+R RH NIV YLG EL  + ++I ++++ GGS+ ++L  FGA T  V + Y  QIL G+ YLHSCG VHRDLK  NVL+   G  +I+DFGTS    +L      + GT  FMAPEVLQR   GM VD+W F C ++QM TG+ PW    G + R LP LL  +     RMPPLP  L+P +   L +CF W PA+RPT++ L+
Sbjct:    1 KWRLGPRIGAGSFGVVHQGLDQVTGQLIAVSSHF-NGQR-----QVLQEVAMMKRLRHRNIVCYLGAELHGSQLFIHEQFIAGGSLEAVLRTFGAITVSVVRRYTLQILEGISYLHSCGVVHRDLKAANVLIDTCGTPRISDFGTS--CINLDQSSTSMAGTPQFMAPEVLQRLDCGMPVDIWGFGCTLIQMITGHSPWH---GLKLRTLPALLAALNRAEGRMPPLPPGLDPALHVLLVSCFQWEPAQRPTSQQLL 246          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835YLD7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD7_9STRA)

HSP 1 Score: 223 bits (568), Expect = 4.470e-68
Identity = 121/256 (47.27%), Postives = 160/256 (62.50%), Query Frame = 1
Query:    4 KWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTEL--SPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQD-DRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHL 762
            KW LG  + RG+FG V+MGL++VTGE +AVK   + G       +L  E+ LM++  H NIV YLG E+      + I QEWVPGGS++S+L  FG F++ +T+ Y RQ L GL YLH    VHRD+KG N+LV   G VK+ADFG S  + D  D   G L+GT +FMAPEVLQR+P G  VD+W+F   +LQM TG  PW S   +         L +  + PPLP +L+P++ A L  CFSW+PA RP+A  L
Sbjct:   90 KWKLGNRIARGSFGVVYMGLNEVTGELMAVKVLSLHGSERDMR-ELHREMALMRQFSHPNIVSYLGAEIREEDGQLCIFQEWVPGGSVSSLLRRFGPFSEDMTRRYTRQALRGLTYLHQHQVVHRDIKGSNILVDDRGTVKLADFGASICVSDPADAGGGALKGTPYFMAPEVLQRKPHGPLVDIWSFGGAILQMVTGEPPWYSAGVSTPYALLQTMLERKGQPPPLPANLSPSLAAMLRRCFSWDPALRPSAAQL 344          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835ZBQ2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ2_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.960e-65
Identity = 116/209 (55.50%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    4 KWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRL 630
            KW LGP +GRGAFGQVHMGLDQ+TGE IA                                                 EWVPGGSI SIL NFG FT+ +T+CYA QIL G++YLHSCG VH DLKGDNVLVS  G+VKIADFGTSEQ +DLQD +  L GT +FMAPEVLQRQ   MAVDV AFAC++LQM TG+ PW S LG  K L
Sbjct:  189 KWKLGPCIGRGAFGQVHMGLDQMTGELIA-------------------------------------------------EWVPGGSICSILQNFGPFTERITRCYAHQILQGIMYLHSCGIVHHDLKGDNVLVSTSGVVKIADFGTSEQAFDLQDRQTKLMGTPYFMAPEVLQRQRHNMAVDVLAFACVILQMLTGDAPWRSLLGTNKDL 348          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: C1MT70_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT70_MICPC)

HSP 1 Score: 207 bits (526), Expect = 1.490e-62
Identity = 110/264 (41.67%), Postives = 159/264 (60.23%), Query Frame = 1
Query:    1 RKWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDD-----RGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 777
            R+W  G  LG G+FG+V +GL+  TGE  AVK  + +  R+    +L  E+ L+ R +H NIV+Y+GTE S   +YI  E+VPGGSI S+L  FG F + V   Y RQIL GL YLH+  TVHRD+KG N+LV   G +K+ADFG ++ L +  DD     RG ++G+ ++MAPEV++++  G   DVWA  C VL+M TG  PW+   G  + L ++   M+   +P +P+ L+P     +  C   +P  RP A  L+ H +
Sbjct:   23 RRWTKGDALGAGSFGRVFLGLNSETGELFAVKE-VAAAKRAECIEQLEQEVTLLSRLQHPNIVRYIGTERSAEFLYIFLEYVPGGSIASLLERFGRFEESVMSVYTRQILIGLDYLHAQRTVHRDIKGANILVEKSGRIKLADFGMAKTLVERIDDPAARARGGVKGSAYWMAPEVIRQKGHGSEADVWAVGCTVLEMATGKPPWSHCSGQVQVLYKIASTME---LPEIPSFLSPDASEFVLLCLQRDPESRPAADRLLTHAF 282          
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Match: A0A835YJH2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 7.830e-61
Identity = 115/266 (43.23%), Postives = 158/266 (59.40%), Query Frame = 1
Query:    7 WALGPELGRGAFGQVHMGLDQVTGEFIAVKACLI-----SGGRSST-ASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRL--LRLMQA-HRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 777
            W+LG  +GRGA G VHMG+ + TG  IAVK   +     SG   S  A     E+++M+  RH N+V +LG+      ++I+QEWVPGGS+ ++LS+FG     V + YARQ+LHGL YLH+    HRDLK  N+LV AGG VKIADFGTS  +   + + G L GT  +MAPE+L +   G+ VD+WAF   VL+M T   PW   +   + +P +  LR + A    P LP DL+  +R+ L  CF W   +RPT   L+ H +
Sbjct:   54 WSLGKVIGRGATGTVHMGMIKDTGRLIAVKVIEMHHHARSGASGSEHAXXXXREVQMMRLLRHPNLVAFLGSTSRGNELFILQEWVPGGSLLALLSSFGRLNTKVVRHYARQVLHGLAYLHANTIAHRDLKCANLLVDAGGNVKIADFGTSAVVSQCRGNHGQLIGTPIYMAPELLFQGKHGLPVDIWAFGAAVLEMATALAPW--RIQGPEGMPSIDYLRCLVAKEHAPALPLDLDAALRSMLMQCFCWRSGDRPTCSALLAHDF 317          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131065 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJU3_9STRA3.480e-192100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z180_9STRA8.980e-12366.67Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CHV3_9STRA1.730e-11966.29Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YKW2_9STRA1.060e-7949.62Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YLS7_9STRA3.370e-7048.65Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YTJ7_9STRA8.090e-7047.47Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YLD7_9STRA4.470e-6847.27Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZBQ2_9STRA1.960e-6555.50Kinase-like domain-containing protein n=1 Tax=Trib... [more]
C1MT70_MICPC1.490e-6241.67Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A835YJH2_9STRA7.830e-6143.23Kinase-like domain-containing protein n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:52584..55069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131065|gw1.76.29.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04016,map04016
KEGG koko:K20717
EC2.7.11.25
DescriptionSerine/Threonine protein kinases, catalytic domain
COG categoryT
Max annot lvl3041|Chlorophyta
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota,37KQM@33090|Viridiplantae,34K8N@3041|Chlorophyta
Evalue2.44e-63
Seed ortholog38833.XP_003058436.1
Hectar predicted targeting categoryother localisation
TranscriptId131387
TrackFilteredModels1
ProteinId131065
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131065gene_11327Tribonema minus UTEX_B_3156 geneContig_76 52584..55069 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11327_1exon_11327_1Tribonema minus UTEX_B_3156 exonContig_76 52584..52673 +
exon_11327_2exon_11327_2Tribonema minus UTEX_B_3156 exonContig_76 54383..55069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11327CDS_11327Tribonema minus UTEX_B_3156 CDSContig_76 52584..52673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131065Trimin1|131065|gw1.76.29.1Tribonema minus UTEX_B_3156 polypeptideContig_76 52584..55069 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11327 ID=mRNA_11327|Name=jgi.p|Trimin1|131065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_76:52584..55069+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGAAGTGGGCACTAGGCCCAGAGCTAGGGCGAGGTGCTTTCGGCCAGGT
GCACATGGGGCTGGACCAGGTGACGGGAGAATTCATCGCGGTCAAGGCTT
GTTTGATCTCAGGCGGGCGAAGCAGCACAGCGAGCAAGCTCAGCAATGAG
ATTCGGCTCATGCAGCGCTGCCGCCACGTCAACATCGTCCAATACCTGGG
CACAGAGCTGAGCCCAGCTGGCGTCTACATCGTGCAGGAGTGGGTGCCTG
GCGGCAGCATCACTAGCATTCTTTCAAACTTCGGCGCATTCACGCAACCA
GTCACTCAGTGCTACGCACGCCAGATCCTTCATGGCTTAGTGTATTTACA
CAGCTGCGGCACCGTCCACCGTGACCTGAAGGGCGACAACGTGCTCGTCA
GCGCTGGCGGCATCGTCAAGATAGCTGACTTTGGTACAAGTGAACAGCTG
TACGACCTGCAAGACGACCGCGGCCACCTGCAGGGCACCCTACACTTCAT
GGCGCCGGAAGTGTTGCAGCGCCAGCCTCAAGGCATGGCTGTGGACGTGT
GGGCCTTCGCCTGCCTCGTCTTGCAGATGCACACTGGCAACATGCCATGG
GCTTCAGAACTGGGCGCCCGGAAGCGACTACCTCGGCTGCTGCGGCTCAT
GCAGGCGCACCGCATGCCACCGCTGCCGAACGACCTCAACCCAACAATGC
GCGCAGCCCTGACCGCGTGCTTCAGCTGGAACCCCGCTGAACGACCGACC
GCCAAGCACCTGGTGCACCACGGCTAC
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protein sequence of jgi.p|Trimin1|131065

>Trimin1|131065|gw1.76.29.1 ID=Trimin1|131065|gw1.76.29.1|Name=jgi.p|Trimin1|131065|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
RKWALGPELGRGAFGQVHMGLDQVTGEFIAVKACLISGGRSSTASKLSNE
IRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQP
VTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQL
YDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPW
ASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPT
AKHLVHHGY
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mRNA from alignment at Contig_76:52584..55069+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11327 ID=mRNA_11327|Name=jgi.p|Trimin1|131065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2486bp|location=Sequence derived from alignment at Contig_76:52584..55069+ (Tribonema minus UTEX_B_3156 )
CGGAAGTGGGCACTAGGCCCAGAGCTAGGGCGAGGTGCTTTCGGCCAGGT GCACATGGGGCTGGACCAGGTGACGGGAGAATTCATCGCGGTGAGCACCT CTTGATGCTGATTGTGCTTAGGGTTGGCAAAACCGTATTTGGTATATACG CTGTATATACGTATGTGTATGGTGTATATACACCGTATCTGAGATTCCGA GGTTCAGAAATCCGTATTTGCCGTATATGGGCTATATCGAGCATATTACA CTCACAGCACTTAATAGTGAGCATACACGTGTTCCTGTCCGTGTTTTAGC CATACAGCAGCAGTAGCAGCAGCAGCGCGCGCGTGTGCACTAGTGACACA ATTGGAGGGCGGCCTCTGGCCGCTTGCTGCTGCTGCTGCTGCCGTGCTGC TGCTGCTGCTGCTGCTCCTGCTCCTGCTGCTGCTGGACCAGGTCAGACCC GCTCGTCTCAAAAGCAACCCTGAACGCTATAAAGCAACCGAGGTAGTTAG GCTATAGTCAGGTCTGTCAGGACAAATTGAATGTTGAAGTTGAGAAGTAC TAGGCTGTTCGGCTCACTCAGGCGCACCCGCTGACTATTTATTTGTTGAA GTTGATAAAGGTTGAGCTGTGGTATTGCCTGTTCAGCGGTGATGTTGGAG TTGAAGTTAGCTTGAAGTTGAAGTTCATATGGCACCAAAGAATTGTGACA ACACATCAGCATCAGCGCCAACTTCAACAAGTGAGTAGTCAAGAGGTGCC TCTGATATAGGGCTACAACGTGATGTCACCCAACTTCAACGTCACTTCCG CGCTGACGACTTTACTACTACACAATGGTCTTGGTTGCTTTATAGCGTTC AGGGTTGCCTTTGAGACGAGCGGATCACCAGGTGCTGCTGCACTGAAGCT GCACTACTGCTGCTGCTGCTCTGCGGCGTGCCCGATGCCTTTGCTGCTGT GTCTACAGCTGCTGTTTGGTTGCAGCCGCTGCATTTGCAGCCCAGACTTT GAGAGCAGCCTCAGACTGCCTGTGGAGTAGCAAGACTAGGTAGCAGCAGC AGCGACAGCACTGTTTGCTGTGGCTGCTGTGGCTTGCTGCTGATGATTGC CGTTTGAGATGAAGTCACTGCCCACTTGCCAGATGCAGCCATGGCCTGCT GCCATTGGCACTGTGAAGCTCAGTGACACACAGTATGCAACATGTGAAGA ACAACCTATGTGCCTCTGAACGCATTGCGCTTTGAAAGCACTGAACATTT ATGTCGAAATCATGTGATTCGAAATACCTAAATCATACCGCCAAATCGAA TGCTTGCCTGAGCTGTTGATCACAAGATTGCTACGTACTGCTTGCAATAC CCATGAGGGGGGGGCATGCTCATTTGGTCGAGGGTAATCATAGATTGAGG AAGGGCGAGAAGGGCTCAACGCTTTCCCCGCTGCTGCAGCGATGGACGAG TAATTGCAATTATTGTGAAGTTTTCAATCACCTGAGACACAGTACAAGGC ACTCTCATGTCGCTCATATGCCCTTTCCACAGCCGCCGTTGCATGCCCTG CACTTCTGAAGTTGAATCAGATGTTATGCTGGGTACGCCTGTTCTGGTGA TTTGGGTTTGTCAACTACAGTTCAAATACGCGCATATATGGTACGTATGG CTAAAATACCGTATTTTAGCCGTATCTAAGAATCTGCAATATGGCTTTTG CCAACCCTAACAATTTGTGCTGCATGATGTCTTGCGACGTCAGATCTGAC TCACAGTGGCCTCGTGTTCTGCCGCTGCCGTCGCTGCCTCATGCCACAGG TCAAGGCTTGTTTGATCTCAGGCGGGCGAAGCAGCACAGCGAGCAAGCTC AGCAATGAGATTCGGCTCATGCAGCGCTGCCGCCACGTCAACATCGTCCA ATACCTGGGCACAGAGCTGAGCCCAGCTGGCGTCTACATCGTGCAGGAGT GGGTGCCTGGCGGCAGCATCACTAGCATTCTTTCAAACTTCGGCGCATTC ACGCAACCAGTCACTCAGTGCTACGCACGCCAGATCCTTCATGGCTTAGT GTATTTACACAGCTGCGGCACCGTCCACCGTGACCTGAAGGGCGACAACG TGCTCGTCAGCGCTGGCGGCATCGTCAAGATAGCTGACTTTGGTACAAGT GAACAGCTGTACGACCTGCAAGACGACCGCGGCCACCTGCAGGGCACCCT ACACTTCATGGCGCCGGAAGTGTTGCAGCGCCAGCCTCAAGGCATGGCTG TGGACGTGTGGGCCTTCGCCTGCCTCGTCTTGCAGATGCACACTGGCAAC ATGCCATGGGCTTCAGAACTGGGCGCCCGGAAGCGACTACCTCGGCTGCT GCGGCTCATGCAGGCGCACCGCATGCCACCGCTGCCGAACGACCTCAACC CAACAATGCGCGCAGCCCTGACCGCGTGCTTCAGCTGGAACCCCGCTGAA CGACCGACCGCCAAGCACCTGGTGCACCACGGCTAC
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Coding sequence (CDS) from alignment at Contig_76:52584..55069+

>mRNA_11327 ID=mRNA_11327|Name=jgi.p|Trimin1|131065|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_76:52584..55069+ (Tribonema minus UTEX_B_3156 )
CGGAAGTGGGCACTAGGCCCAGAGCTAGGGCGAGGTGCTTTCGGCCAGGT
GCACATGGGGCTGGACCAGGTGACGGGAGAATTCATCGCGGTCAAGGCTT
GTTTGATCTCAGGCGGGCGAAGCAGCACAGCGAGCAAGCTCAGCAATGAG
ATTCGGCTCATGCAGCGCTGCCGCCACGTCAACATCGTCCAATACCTGGG
CACAGAGCTGAGCCCAGCTGGCGTCTACATCGTGCAGGAGTGGGTGCCTG
GCGGCAGCATCACTAGCATTCTTTCAAACTTCGGCGCATTCACGCAACCA
GTCACTCAGTGCTACGCACGCCAGATCCTTCATGGCTTAGTGTATTTACA
CAGCTGCGGCACCGTCCACCGTGACCTGAAGGGCGACAACGTGCTCGTCA
GCGCTGGCGGCATCGTCAAGATAGCTGACTTTGGTACAAGTGAACAGCTG
TACGACCTGCAAGACGACCGCGGCCACCTGCAGGGCACCCTACACTTCAT
GGCGCCGGAAGTGTTGCAGCGCCAGCCTCAAGGCATGGCTGTGGACGTGT
GGGCCTTCGCCTGCCTCGTCTTGCAGATGCACACTGGCAACATGCCATGG
GCTTCAGAACTGGGCGCCCGGAAGCGACTACCTCGGCTGCTGCGGCTCAT
GCAGGCGCACCGCATGCCACCGCTGCCGAACGACCTCAACCCAACAATGC
GCGCAGCCCTGACCGCGTGCTTCAGCTGGAACCCCGCTGAACGACCGACC
GCCAAGCACCTGGTGCACCACGGCTAC
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