mRNA_11295 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174597
Unique NamemRNA_11295
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: A0A836CLY5_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY5_9STRA)

HSP 1 Score: 569 bits (1466), Expect = 7.390e-206
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1 
Query:    1 NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCAKRDVQAPGGQAGSWIKKVSKKKRNK 780
            NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCAKRDVQAPGGQAGSWIKKVSKKKRNK
Sbjct:    1 NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCAKRDVQAPGGQAGSWIKKVSKKKRNK 260
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: A0A7S2AMA5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMA5_9STRA)

HSP 1 Score: 286 bits (731), Expect = 3.630e-93
Identity = 128/238 (53.78%), Postives = 152/238 (63.87%), Query Frame = 1 
Query:    7 CSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYG---PDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCAKR 711
            C G G C++C+ TC CYEG+G        GG  S DCS+  CP  + + D       AH   ECS NG C+R +G C C   F GDACQRR CPNDCSGHG+CLSMA+L    AA PLT A   YG   P   ++WDA+    C+CDS W VGLG G+TQ  E+FGP C L  C SGDDPET V+E  C  KT PGG  VG AGN+CHVDC+NRG+CDYS G C+CF G+YG NC  +
Sbjct:   72 CHGRGVCDFCKQTCVCYEGYGKDTDTITAGGTISVDCSERVCPYAKAFGDVPYSTDSAHQLAECSNNGICERTSGSCQCFPGFEGDACQRRSCPNDCSGHGQCLSMAELVNAAAAHPLTAADTTYGFSAPVSAQSWDAESLQACVCDSRWTVGLGPGQTQTGEWFGPDCSLQHCSSGDDPETKVDETACFNKTAPGGRGVGEAGNRCHVDCSNRGICDYSTGECACFQGWYGSNCGAK 309
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: A0A8K1CPX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPX8_PYTOL)

HSP 1 Score: 271 bits (693), Expect = 1.900e-88
Identity = 124/233 (53.22%), Postives = 148/233 (63.52%), Query Frame = 1 
Query:    7 CSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            C+GHG CN    TC C+EG+G  ATD       + DCSQ  CP G  W        VAHA  ECS  G CDR +G C C   + G ACQR  C N CSGHGRC+SM ++    +A PL+ AA   G +D   WD    FGCLCDSSW VGLGSG+ Q +E+FGP C L+RCP+GDDP T V+E +C GKT      VG  GN+CHVDCANRG+CDY+ G C CF+G+YG NCA
Sbjct:    5 CNGHGRCNTATKTCTCFEGYG-AATDVAV--YKAPDCSQRVCPAGPSWGGIPTDETVAHALAECSDMGVCDRSSGQCKCYRGYEGSACQRSTCLNGCSGHGRCVSMREMATITSAFPLSPAATYEGAEDTTTWDQNRIFGCLCDSSWAVGLGSGQRQQSEWFGPDCSLLRCPTGDDPLTAVDETDCNGKTATDSTSVGQPGNRCHVDCANRGICDYTSGTCMCFSGFYGSNCA 234
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: A0A2P4X7I9_9STRA (EGF-like domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7I9_9STRA)

HSP 1 Score: 268 bits (685), Expect = 8.380e-87
Identity = 126/237 (53.16%), Postives = 147/237 (62.03%), Query Frame = 1 
Query:    1 NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCS--QMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            N+C+ HG C+    TC CYEGFG   TD       S DCS    TCP G  W         +H   ECSG G CDR +G C+C   + G ACQR  CPN CSGHG+CLSM ++  E +A PL+      G      WD     GCLCDSSWPVGLG+GE+Q+A+YFGP C  + CPSGDDP T V+E +CEG    GG   GAA N CHVDCANRG+CDYSRG CSCF G+YG NCA
Sbjct:   32 NNCNAHGRCDALTKTCTCYEGFG-APTDVTN--YRSPDCSLRTRTCPAGPSWGGIPTSATTSHPKAECSGAGICDRSSGTCICYYGYEGSACQRSSCPNSCSGHGQCLSMREMAMESSAFPLSPPTKYEGDVTATTWDQDRIQGCLCDSSWPVGLGAGESQLAQYFGPDCSRMHCPSGDDPMTAVDETDCEGIIAAGGGGTGAADNLCHVDCANRGICDYSRGECSCFPGFYGSNCA 265
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: W2Q018_PHYPN (EGF-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q018_PHYPN)

HSP 1 Score: 266 bits (679), Expect = 7.750e-86
Identity = 122/235 (51.91%), Postives = 146/235 (62.13%), Query Frame = 1 
Query:    1 NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            N+C+ HG C+    TC CYEGFG   TD       S DCS   CP G  W        ++H  +ECSG G CDR TG C+C   F G ACQR  CPN CSGHG+CLSM +L    +A PL+      G      WD     GCLCDSSWPVGLG+GE+Q+++YFGP C  + CPSGDDP T V+E +CEG    GG   GA  N CHVDCANRG+C+Y+ G CSCF+G+YG NCA
Sbjct:   38 NNCNAHGRCDALTKTCTCYEGFG-APTDITN--YRSPDCSLRICPAGPSWGGIPTSATISHPKEECSGAGVCDRTTGTCICYYGFEGSACQRSSCPNSCSGHGQCLSMRELAAAPSAFPLSPPTKYEGDVTATTWDQDRIQGCLCDSSWPVGLGAGESQLSQYFGPDCSRMHCPSGDDPMTAVDETDCEGVVADGGGGTGAPDNLCHVDCANRGICNYNSGECSCFSGFYGSNCA 269
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: G5A2N6_PHYSP (EGF-like domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5A2N6_PHYSP)

HSP 1 Score: 265 bits (678), Expect = 1.130e-85
Identity = 124/233 (53.22%), Postives = 145/233 (62.23%), Query Frame = 1 
Query:    7 CSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            C+ HG C+    TC C EG+G  +TD       S DCS  TCP G  W         +HA  ECS  G CDR TG CMC   + G ACQR  CPN CSGHG+CLSM +L  E +A PL+ A    G      WD     GCLCDS WPVGLG+GE+Q++++FGP C  + CPSGDDP T  +E +CEG    GG   GAAGN CHVDCANRG+CDYS GVCSCF G+YG NCA
Sbjct:   41 CNAHGRCDALTKTCECNEGYG-ASTDITN--YRSPDCSLRTCPAGPSWGGIPTSATTSHAKAECSDAGVCDRSTGTCMCYYGYEGSACQRSTCPNGCSGHGQCLSMRELATETSAFPLSPATTYGGDVTATTWDQDRIQGCLCDSYWPVGLGAGESQLSQWFGPDCSRMHCPSGDDPMTAEDETDCEGVVAAGGVGPGAAGNLCHVDCANRGICDYSSGVCSCFPGFYGSNCA 270
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.280e-85
Identity = 125/243 (51.44%), Postives = 149/243 (61.32%), Query Frame = 1 
Query:    1 NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGG--AEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCAKRDVQA 723
            N C+GHGTCN    TC CYEG+G     TL     +ADCS   CP G+ W D       AH +QECSG G CDR +G C C   FTG AC+R  CP+DCS HGRC++M  L     A PL+      G DD   WD ++ FGC+CDS W VGLG+G+TQ  E+FGP C L  CPSGDDP T V+E +C   T         G AGN CHVDC+NRG CDY+ G+C CFTGYYG NC ++ V A
Sbjct:   29 NWCNGHGTCNTGTRTCTCYEGWGADTDLTLY---RAADCSARVCPAGKAWGDVPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSGEDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 268
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: A0A833WEK2_PHYIN (EGF-like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WEK2_PHYIN)

HSP 1 Score: 264 bits (675), Expect = 3.130e-85
Identity = 121/235 (51.49%), Postives = 144/235 (61.28%), Query Frame = 1 
Query:    1 NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            N+C+ HG C+    TC CYEGFG   TD       S DCS  TCP G  W         +H  +ECSG G CDR TG C C   + G ACQR  CPN CSGHG+C+SM +L  E +A PL+      G      WD     GCLCDS+WPVGLG+GE+Q+++YFGP C  + CPSGDDP T V+E  C G    GGA  G   N CHVDCANRG+CDY+ G CSCF+G+YG NCA
Sbjct:   38 NNCNAHGRCDALTKTCTCYEGFG-APTDITN--YRSPDCSMRTCPAGPSWGGIPNSATTSHPKEECSGAGVCDRNTGTCFCYYGYEGSACQRSSCPNSCSGHGQCMSMRELAVEPSAFPLSPPTKYEGDVRATTWDQDRIQGCLCDSTWPVGLGAGESQLSQYFGPDCSKMHCPSGDDPMTAVDETKCVGIVATGGAGTGGPDNLCHVDCANRGICDYNTGECSCFSGFYGSNCA 269
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: A0A5D6XZL0_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 3.430e-82
Identity = 116/233 (49.79%), Postives = 143/233 (61.37%), Query Frame = 1 
Query:    7 CSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            C+GHG C     TC C+EG+G  +  T      S DCS+  CP G  W         AH   ECS  G CDR +G C C A + G ACQR  CPN CSGHG+C+SM  + E   A PL+ A    G +    WD    FGC+CDSSW VGL +G+ Q +++FG  C L+RCPSGDDP TTV+E +C GK  PGG   G  GNKCH+DC+NRG CDY+ G C+CF+G+YG NCA
Sbjct:   30 CNGHGRCVTASKTCICFEGYGATSDITSY---KSPDCSKRVCPSGPSWAGIPTAANSAHPRTECSDAGYCDRSSGQCRCFAGYDGAACQRYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEATTTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGKLAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNCA 259
[Close]
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Match: K3WVA2_GLOUD (EGF-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVA2_GLOUD)

HSP 1 Score: 256 bits (655), Expect = 4.340e-82
Identity = 117/233 (50.21%), Postives = 142/233 (60.94%), Query Frame = 1 
Query:    7 CSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPWFDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCSGHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWPVGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVGAAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCA 705
            C+GHG CN    TCAC+EG+G ++   +     + DCS   CP G  WF         H   ECS  G CDR +G C C   + G ACQR  CPN CSGHG+CLSM  L    +A PL+ A    G +    WD    FGCLCDSSW VGL +G+ Q++E+FG  C L+RCPSGDDP T V+E +C GK   G    GA GNKCHVDCANRG CD++ G C+CF G+YG NCA
Sbjct:   47 CNGHGRCNTGTKTCACFEGYGAVSDIAVY---KAPDCSLRICPAGPSWFGIPSAADTGHPKAECSDAGFCDRSSGQCRCLLGYEGAACQRYVCPNGCSGHGQCLSMKALAPTTSAFPLSAATTYSGAEATSTWDQNRIFGCLCDSSWSVGLAAGQRQLSEWFGADCSLMRCPSGDDPMTAVDETDCSGKVAAGDVGTGATGNKCHVDCANRGKCDFTTGTCTCFDGFYGSNCA 276
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174597 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLY5_9STRA7.390e-206100.00EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2AMA5_9STRA3.630e-9353.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8K1CPX8_PYTOL1.900e-8853.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4X7I9_9STRA8.380e-8753.16EGF-like domain-containing protein n=1 Tax=Phytoph... [more]
W2Q018_PHYPN7.750e-8651.91EGF-like domain-containing protein n=10 Tax=Phytop... [more]
G5A2N6_PHYSP1.130e-8553.22EGF-like domain-containing protein n=4 Tax=Phytoph... [more]
D7FYV5_ECTSI1.280e-8551.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A833WEK2_PHYIN3.130e-8551.49EGF-like domain n=1 Tax=Phytophthora infestans Tax... [more]
A0A5D6XZL0_9STRA3.430e-8249.79EGF-like domain-containing protein n=1 Tax=Pythium... [more]
K3WVA2_GLOUD4.340e-8250.21EGF-like domain-containing protein n=1 Tax=Globisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:318782..322290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174597|e_gw1.116.85.1
DescriptionEGF-like domain
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGs2A4YC@1|root,2RY8D@2759|Eukaryota,3QER8@4776|Peronosporales
Evalue1.57e-87
Seed ortholog4792.ETI42285
Hectar predicted targeting categoryother localisation
TranscriptId174919
TrackFilteredModels1
ProteinId174597
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174597gene_11295Tribonema minus UTEX_B_3156 geneContig_116 318782..322290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174597Trimin1|174597|e_gw1.116.85.1Tribonema minus UTEX_B_3156 polypeptideContig_116 318782..322290 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11295_1exon_11295_1Tribonema minus UTEX_B_3156 exonContig_116 318782..318823 +
exon_11295_2exon_11295_2Tribonema minus UTEX_B_3156 exonContig_116 319420..319549 +
exon_11295_3exon_11295_3Tribonema minus UTEX_B_3156 exonContig_116 319586..319652 +
exon_11295_4exon_11295_4Tribonema minus UTEX_B_3156 exonContig_116 320385..320622 +
exon_11295_5exon_11295_5Tribonema minus UTEX_B_3156 exonContig_116 321066..321271 +
exon_11295_6exon_11295_6Tribonema minus UTEX_B_3156 exonContig_116 322191..322290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11295CDS_11295Tribonema minus UTEX_B_3156 CDSContig_116 318782..318823 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11295 ID=mRNA_11295|Name=jgi.p|Trimin1|174597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=783bp|location=Sequence derived from alignment at Contig_116:318782..322290+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACCACTGCTCGGGGCATGGCACCTGCAATTACTGCCGCAATACCTGCGC
GTGCTACGAGGGCTTCGGCAACCTCGCCACAGACACCCTCGAGGGCGGAG
CCGCCAGCGCCGACTGCTCGCAGATGACGTGCCCCCGTGGCCGCCCGTGG
TTCGACGCCACGCTCATACGCGCCGTTGCGCACGCCGACCAGGAGTGTTC
CGGGAATGGCGCCTGCGACAGGGGGACGGGGGTGTGCATGTGCAATGCGC
CCTTCACCGGCGACGCGTGTCAGCGCCGCCGCTGCCCCAATGACTGCAGC
GGTCACGGCCGCTGCCTCAGCATGGCCGACCTGACGGAGGAGGGTGCTGC
TGAGCCGCTGACACGTGCGGCAAACGCGTACGGCCCCGATGATGTCGAGG
CCTGGGATGCGCAGCTCACATTCGGCTGCCTGTGCGACAGCTCGTGGCCT
GTGGGACTGGGGTCGGGCGAGACGCAGGTGGCCGAGTACTTTGGCCCCCA
CTGCGGCCTCATCCGCTGCCCCAGCGGCGACGACCCGGAAACCACCGTCA
ACGAGGAGAACTGCGAGGGGAAGACCCCCCCCGGCGGGGCAGAGGTGGGG
GCGGCGGGCAACAAGTGCCACGTGGACTGCGCCAACAGGGGTGTGTGCGA
CTACTCGCGGGGCGTGTGCTCGTGCTTCACGGGTTACTACGGCGACAACT
GCGCAAAGCGCGACGTGCAGGCGCCCGGCGGGCAGGCCGGCAGCTGGATC
AAGAAGGTCTCCAAGAAGAAGAGGAACAAGTGA
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protein sequence of jgi.p|Trimin1|174597

>Trimin1|174597|e_gw1.116.85.1 ID=Trimin1|174597|e_gw1.116.85.1|Name=jgi.p|Trimin1|174597|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=261bp
NHCSGHGTCNYCRNTCACYEGFGNLATDTLEGGAASADCSQMTCPRGRPW
FDATLIRAVAHADQECSGNGACDRGTGVCMCNAPFTGDACQRRRCPNDCS
GHGRCLSMADLTEEGAAEPLTRAANAYGPDDVEAWDAQLTFGCLCDSSWP
VGLGSGETQVAEYFGPHCGLIRCPSGDDPETTVNEENCEGKTPPGGAEVG
AAGNKCHVDCANRGVCDYSRGVCSCFTGYYGDNCAKRDVQAPGGQAGSWI
KKVSKKKRNK*
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mRNA from alignment at Contig_116:318782..322290+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11295 ID=mRNA_11295|Name=jgi.p|Trimin1|174597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3509bp|location=Sequence derived from alignment at Contig_116:318782..322290+ (Tribonema minus UTEX_B_3156 )
AACCACTGCTCGGGGCATGGCACCTGCAATTACTGCCGCAATGTAAGTCG
CGTGAACTCAAACTTCAAGTTGATGCGGATCTTGCCGCCCTTCACGCACG
TTTCCTAACATTTTACTGCTTCTTGCACGGTTAGGTCACTCTGAAGCGCT
TACTCTGCATCATGCGCCGCTGGTGCGATGTGTCGATGCTACATGTGCTC
CCGCGACTCCTGCTGCGATCCAAGTTCATATGCAGCAGCGCTCATCTATA
CAATCCCATGGGTGTCAAGGCCAAGCGCGCTCACCGTCCAGGATTTGAAT
AAGTTGTGACCGTCACGCTGTATGTTGGATCTGCTGCGTCACCATTGCCA
GCCATGGCAGCAAGGGCAAGGACGTCACCTGATGCCTTCATCATCTGAGT
GCCGCCATTACTTCAAGTGCACACAATGCAGACAATATGTACTTCTACTC
ATTTAGCTCATGTGCGCTACCTGCCACAGTGAATGCTTACAACCCTCATG
TCAAGCTGAGCATGAAGTTTTATGGCTTGTGCTCCCCCAGACATTGCCCC
CATGTATGCTGCAACTGCACTCTAAATCGCCCACATTGACCCCCCCTGTC
AAATGAAAGTGCACTCAACCCCCCCCCCCCCCTGTCAGACCTGCGCGTGC
TACGAGGGCTTCGGCAACCTCGCCACAGACACCCTCGAGGGCGGAGCCGC
CAGCGCCGACTGCTCGCAGATGACGTGCCCCCGTGGCCGCCCGTGGTTCG
ACGCCACGCTCATACGCGGTTCGGCGCTTGCGGTGAGCAAGGACGCGAGT
GGAGCCGTTGCGCACGCCGACCAGGAGTGTTCCGGGAATGGCGCCTGCGA
CAGGGGGACGGGGGTGTGCATGTGAGCTGCTCCGTCCGAACCTGTGTACT
TGTGGGGCTTGTGTACAACGAGACAGAACATCCTTCAACGTGAAAAATGA
ATGCAATGGAATACATGAGAGTAAGTTTATGTACACAGCTCACGGTAAGC
AACGACGCGGGCGGCATGGTGGCGCACGCCGACCAGGAGTGTTCCGGCAA
CGGCACCTGTGACAGGGGGACTGGGGTGTGCATGTGAGCTTGTACTTGTA
AACAATGGTGACCGTCATGTGTAAATTTGGTGCATGTATTTGGACTGTGC
ACATGGGTACATGGCCTCTGTTGACTTAAGGTGAGCAGGAACGCAGGCGG
CGCGGTCGTGCATACCGACCGGAAGTGGTTCTGGGACGGCGCGTGCGAGG
GGAGGGGGGGGGGATGCATGTGAGCAGCTGCGTTCGCACCTTACAAATAA
TATTCTTTGTCAAGATGGCCATCATGATCAACTCATATGGTAAATTACAT
CGGACTATGCATGTACACGGCCTTCATGTACACGGCCTTCATGACTTCAT
GTTGAGCAACGATGCGGGCGACGCCGTCGCACACGCCGACCAGAAACAGT
GTTCTGTTTGCATGACCGCCCGCCGTGATATGCACCTCTTTATTCATATA
CTTCTATACCTCTACATGCACACATACTATGTATGCGCAACCCTGTTCCG
GAGTCCTGACCGCCACAGCCCCCCCCCCCCCGCCACCCCCCTCCCCCCTG
CAGGTGCAATGCGCCCTTCACCGGCGACGCGTGTCAGCGCCGCCGCTGCC
CCAATGACTGCAGCGGTCACGGCCGCTGCCTCAGCATGGCCGACCTGACG
GAGGAGGGTGCTGCTGAGCCGCTGACACGTGCGGCAAACGCGTACGGCCC
CGATGATGTCGAGGCCTGGGATGCGCAGCTCACATTCGGCTGCCTGTGCG
ACAGCTCGTGGCCTGTGGGACTGGGGTCGGGCGAGACGCAGGTTGGTGGT
GATGCTCAACGGTACCGACTGACACTGTGGATAATGTGTCGGTGATGATG
CTCAACGGTACGGATTGACATTGTGGATTGATGTGTGTAAACAGGGAGGC
GCAGCTCGCATTGGATTGCCGCTGCGACCGCGTGCGGCCCGACAGAGACT
GGACGCAGGCAGGTGGCGATGATGCTCAACCATGGCGTCCCGCAGCTCAC
ATTCGGTGGTGATGCTCACAGCATTGCTCGGTGCATTGTGTTCACTGAAC
ACTTTGACAACTCGCCTTGCGAGACACCAACACGGGCTCAGCCGCCTCGC
AACGCACTGCGCCGAGTACCACTACCGTACTATAAAATGCTGCAATGCGT
CAAAAGGGTTCACAGCAGCAATGCCGCTGTTGTAACCTGTACCGACGCTT
TTGCCGTTTCTGAACTTTTACTTCAACCTTGCAGGTGGCCGAGTACTTTG
GCCCCCACTGCGGCCTCATCCGCTGCCCCAGCGGCGACGACCCGGAAACC
ACCGTCAACGAGGAGAACTGCGAGGGGAAGACCCCCCCCGGCGGGGCAGA
GGTGGGGGCGGCGGGCAACAAGTGCCACGTGGACTGCGCCAACAGGGGTG
TGTGCGACTACTCGCGGGGCGTGTGCTCGTGCTTCACGGGGTGAGGAAAT
GTTGCACAAACTACATACTTCCAAGTACTTTGTAGTTCCGACCTAGTTCT
TGAGTGGCAAGCCGGCGTTGAAGTGCCATTGTGATGGGCATTGCGGAATC
GGCGCCCGCCGCGCGACACTGAAAAGGAGAACGAGGCAGGCGCTGAGCGC
CCACTCCCGTGTGCACATGACGGCATGTGCTGGCACCCGACGCTAGGCGC
CCTCGCCTGATTTTGTGCATCACCAACTGATCCCCGACGCTCTGTGTGAG
ATTGGCCTCAATCGCTCAGTGCGGCGTGCAGCTGCTGGGGCGACGGCTGC
GCCTGGCGTACTGCGCAAATAGTCACCAAGATGGCCAGCAAGTGATTTGC
CCTGTTCCTGACAAGAAAAAAAAAAAAGGACCCCTTTCTAATGCTGGCTG
TAGCCCTACCCCTGGCACTGTAAACGGTTGCAGCGCCGCGTGAGCGGAGC
GTGCTGGACTACTCTCTTGCCTGATTCTCGTGATCAGACCTTACTACTTC
GAAGTACTCCTGCGCTGCGGCTAATGCAAAGACCCGAGTTCATCATGGCT
TGCTCATGGCCCATCCCATCGTCACCATGCAGCAAACCCTACAGACTACC
TGACGCTCTTATGCCCGTAGAGCTGTCAGAGCAGCAATTGCACGGTGCGG
CAGGCGCAAAGCCCTGTCTCTGACCGTGAAAACCCTTAAGGAACCCCCAA
TGGTGAATGCAGTTTAGGTAACCCCTTGGCTGTAGGCAGCTACTACTACA
GCGACAACTGAGCCTGGCCCTGGTGTGCCCCCCGATCCTAAATCCTACCC
CCAATCGCCCCTCTTTGTTGTGGACAGTGACTGCGCCTGACCCCCCCCCC
CCCTGCTGACAACCCCTGCTGCCAAACCTCCCCCCAAATGCCCCTCTTGT
TGTGGACAGTTACTACGGCGACAACTGCGCAAAGCGCGACGTGCAGGCGC
CCGGCGGGCAGGCCGGCAGCTGGATCAAGAAGGTCTCCAAGAAGAAGAGG
AACAAGTGA
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Coding sequence (CDS) from alignment at Contig_116:318782..322290+

>mRNA_11295 ID=mRNA_11295|Name=jgi.p|Trimin1|174597|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=783bp|location=Sequence derived from alignment at Contig_116:318782..322290+ (Tribonema minus UTEX_B_3156 )
AACCACTGCTCGGGGCATGGCACCTGCAATTACTGCCGCAATACCTGCGC
GTGCTACGAGGGCTTCGGCAACCTCGCCACAGACACCCTCGAGGGCGGAG
CCGCCAGCGCCGACTGCTCGCAGATGACGTGCCCCCGTGGCCGCCCGTGG
TTCGACGCCACGCTCATACGCGCCGTTGCGCACGCCGACCAGGAGTGTTC
CGGGAATGGCGCCTGCGACAGGGGGACGGGGGTGTGCATGTGCAATGCGC
CCTTCACCGGCGACGCGTGTCAGCGCCGCCGCTGCCCCAATGACTGCAGC
GGTCACGGCCGCTGCCTCAGCATGGCCGACCTGACGGAGGAGGGTGCTGC
TGAGCCGCTGACACGTGCGGCAAACGCGTACGGCCCCGATGATGTCGAGG
CCTGGGATGCGCAGCTCACATTCGGCTGCCTGTGCGACAGCTCGTGGCCT
GTGGGACTGGGGTCGGGCGAGACGCAGGTGGCCGAGTACTTTGGCCCCCA
CTGCGGCCTCATCCGCTGCCCCAGCGGCGACGACCCGGAAACCACCGTCA
ACGAGGAGAACTGCGAGGGGAAGACCCCCCCCGGCGGGGCAGAGGTGGGG
GCGGCGGGCAACAAGTGCCACGTGGACTGCGCCAACAGGGGTGTGTGCGA
CTACTCGCGGGGCGTGTGCTCGTGCTTCACGGGTTACTACGGCGACAACT
GCGCAAAGCGCGACGTGCAGGCGCCCGGCGGGCAGGCCGGCAGCTGGATC
AAGAAGGTCTCCAAGAAGAAGAGGAACAAGTGA
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