mRNA_11289 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835ZHK2_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK2_9STRA) HSP 1 Score: 254 bits (649), Expect = 8.310e-86 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNRYIHL 369 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNRYIHL Sbjct: 1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNRYIHL 123
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.420e-33 Identity = 57/119 (47.90%), Postives = 84/119 (70.59%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQVRNR 357 G F G+G++VDT R D +HRD+S+V ++GR+ Q+ + L GCNAN+RYWEGRDDF VL+++R+R+ ++N L++D+RN+GRWRRC ++ DLPR WA R+ GL N+ Sbjct: 174 GMDAAFTGIGIVVDTKRNEGDNRHRDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIRV---NENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLAGNQ 289
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI) HSP 1 Score: 106 bits (265), Expect = 9.830e-25 Identity = 52/123 (42.28%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAED---------AKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342 G EKF G+ V+ +T R+ + +HRD+S++ NNG + ++ L+GC AN+R+ E RDDF V++S+R+RL+ NT+ +EVD+RN+GRWRRC+ I D+P WA +S VG+ Sbjct: 141 GIDEKFTGLVVVANTNRQLLNRDKLPGEPMGRHRDVSVIANNGTRNYGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEG-NTVAMEVDARNAGRWRRCSTIAHLDMPADWASKSNVGI 262
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835YXL4_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL4_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.780e-22 Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFS--SDNTLILEVDSRNSGRWRRCARID--KADLPRSWAYRSYVGLQVRN 354 G A+ F GV V T R + A+H +++V +G G A GC+A LRYWEGR DF+VL++SRLRLR + +D +L+LEVD N+G WRRCA + A LP W R+ VGL RN Sbjct: 152 GLADNFTGVAV---TIGRTDGARHA-VNLVVGDGSTGAAAARAAAPGCDAPLRYWEGRGDFSVLRASRLRLRRNGGADGSLVLEVDPHNTGLWRRCAIVAGAAAALPDGWERRAVVGLLARN 269
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A812USU1_SYMMI (LMAN2L protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812USU1_SYMMI) HSP 1 Score: 95.9 bits (237), Expect = 7.980e-22 Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAEDAK-HRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342 G EKF+G+GVI DT+R E+ HRD++++ N+G K + +++GCNAN R+ R DF+V ++R R+ S ++ + + +D NSG+W C ++D LP W +YVG+ Sbjct: 80 GSQEKFVGLGVIFDTFRNTENIHAHRDVTLLINDGEKTWEMMTEDIRGCNANFRFHAERADFSVTDAARARVLISGES-ISVSIDPTNSGQWTDCVKVDNPGLPNDWLKSAYVGI 193
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7S2FHL9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHL9_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 7.630e-20 Identity = 42/116 (36.21%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGLQV 348 G + F G GVI DT++ +E H+D+S++ N+G + ++M+ GC+A++RY EGR DF+V+ +SR ++ + + +L L +D+ ++G W CA ID+ DLP + + Y G+ Sbjct: 125 GASSTFTGFGVIFDTFKNSE-RPHKDVSILVNDGTRSAEEMMSTAVGCDASVRYHEGRADFSVMHASRAKVTYK-EGSLTLSLDAESNGEWETCATIDRLDLPADFDSKVYTGMSA 238
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7S0XEJ2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ2_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 8.880e-20 Identity = 43/115 (37.39%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAED-AKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342 G +KF+G+GVI DT++ E+ A HRD++++ N+G K + E+QGCN N+RY R DF+V S+ R+ ++ L + VD++N+G W C I L + W ++Y+G+ Sbjct: 125 GFIDKFVGIGVIFDTFKNTENLAIHRDVTILINDGEKTYEAMTQEVQGCNINVRYHNERADFSVTDMSKARITVDDNHRLQVLVDAKNTGEWTTCVDITDLPLQKDWLKKAYIGI 239
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 4.360e-18 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 1 Query: 16 FMGVGVIVDTYRRAE-DAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLI-LEVDSRNSGRWRRCA--RIDKADLPRS-WAYRSYVGL 342 F GV V+VDT + A H D+S+V N+G + A + L+GC A LR+ EGRDDF VLK+SRLR+++++ ++ +++D RN+GRWRRCA + K LP W ++VGL Sbjct: 111 FTGVMVVVDTNPNDKAGANHFDVSIVYNDGSR--ADAVQNLEGCIAPLRFHEGRDDFNVLKASRLRIKYTAATRMLEVDMDPRNTGRWRRCATANLAKRGLPAGGWPRTAHVGL 222
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.330e-16 Identity = 40/115 (34.78%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAED-AKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 342 G E+F G GVI DT++ E ++HRD+S++ N+G +M +L+GC+A++RY E R DF+V SR ++ + L++++D +N G+++ CA +D WA +++G+ Sbjct: 141 GSVERFTGFGVIFDTFKNTESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSVESMSRAKV-IVTGKRLVVQIDGKNDGQFKDCAVVD-LPFAMDWAKSAHIGV 253
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Match: A0A7R9U5N4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5N4_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 8.270e-16 Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 1 GCAEKFMGVGVIVDTYRRAEDA-KHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKAD-LPRSWAYRSYVGL 342 G KF+GVG++ DT+R E KHRD++++ N+G K + +QGC+A +R WE R DF V K++R ++ + +VD + G W C R D +P +W ++VG+ Sbjct: 121 GVNPKFVGVGIVFDTFRNTEALDKHRDVALLVNDGTKTVDDMYEVVQGCDAAVRVWEQRADFDVSKAARAKVEIVGREVRV-QVDEKEDGNWEECIRTTLPDTIPEAWLKSAHVGV 235 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174656 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11289 ID=mRNA_11289|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_116:270256..271958+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCTGCGCGGAAAAGTTCATGGGCGTCGGCGTGATCGTGGACACGTACCGback to top protein sequence of jgi.p|Trimin1|174656 >Trimin1|174656|e_gw1.116.78.1 ID=Trimin1|174656|e_gw1.116.78.1|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp GCAEKFMGVGVIVDTYRRAEDAKHRDISMVTNNGRKGGAQVMTELQGCNAback to top mRNA from alignment at Contig_116:270256..271958+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11289 ID=mRNA_11289|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1703bp|location=Sequence derived from alignment at Contig_116:270256..271958+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_116:270256..271958+ >mRNA_11289 ID=mRNA_11289|Name=jgi.p|Trimin1|174656|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_116:270256..271958+ (Tribonema minus UTEX_B_3156 )back to top |