mRNA_11276 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|174651
Unique Name	mRNA_11276
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|174651 vs. uniprot
Match: A0A835ZFU8_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU8_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.460e-63
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1

Query:    1 MSCRNRNAHSLNLHICLSLSDSARPAGGTRTQRARAAPLVLLAQVPGTVDTSYRRCEALGCTKWPLYAYEGEKARFCSAHREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGADTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLHKEEGMXXXXXXXXXXXXXXXXXXXGIRFCAEHSNNADAD 582
            MSCRNRNAHSLNLHICLSLSDSARPAGGTRTQRARAAPLVLLAQVPGTVDTSYRRCEALGCTKWPLYAYEGEKARFCSAHREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGADTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLHKEEGMXXXXXXXXXXXXXXXXXXXGIRFCAEHSNNADAD
Sbjct:    1 MSCRNRNAHSLNLHICLSLSDSARPAGGTRTQRARAAPLVLLAQVPGTVDTSYRRCEALGCTKWPLYAYEGEKARFCSAHREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGADTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLHKEEGMXXXXXXXXXXXXXXXXXXXGIRFCAEHSNNADAD 194

[Close]

BLAST of jgi.p|Trimin1|174651 vs. uniprot
Match: D7FKH1_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.360e-7
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1

Query:  154 SYRRCEALGCTKWPLYAYEGEKARFCSAHRE 246
            S+RRCE  GCTKWPLYA+EGEKA++CS H++
Sbjct:    4 SHRRCEHSGCTKWPLYAFEGEKAKYCSQHKD 34

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|174651 vs. uniprot

BLAST of jgi.p|Trimin1|174651 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZFU8_9STRA	2.460e-63	100.00	EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3...	[more]
D7FKH1_ECTSI	6.360e-7	70.97	EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_116	contig	Contig_116:181865..184771 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|174651\|e_gw1.116.87.1
Max annot lvl	2880.D7FKH1\|-
EggNOG OGs	29ZCP@1\|root,2RXW0@2759\|Eukaryota
Evalue	1.04e-07
Seed ortholog	2880.D7FKH1
Hectar predicted targeting category	other localisation
Ec32 ortholog description	EsV-1-7 domain protein
Ec32 ortholog	Ec-12_002100.1
TranscriptId	174973
Track	FilteredModels1
ProteinId	174651

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|174651	gene_11276	Tribonema minus UTEX_B_3156	gene	Contig_116 181865..184771 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11276_1	exon_11276_1	Tribonema minus UTEX_B_3156	exon	Contig_116 181865..182125 +
exon_11276_2	exon_11276_2	Tribonema minus UTEX_B_3156	exon	Contig_116 182718..182816 +
exon_11276_3	exon_11276_3	Tribonema minus UTEX_B_3156	exon	Contig_116 183352..183465 +
exon_11276_4	exon_11276_4	Tribonema minus UTEX_B_3156	exon	Contig_116 184664..184771 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11276	CDS_11276	Tribonema minus UTEX_B_3156	CDS	Contig_116 181865..182125 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|174651	Trimin1\|174651\|e_gw1.116.87.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_116 181865..184771 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_116:181865..184771+
coding sequence from alignment at Contig_116:181865..184771+

spliced messenger RNA

>mRNA_11276 ID=mRNA_11276|Name=jgi.p|Trimin1|174651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_116:181865..184771+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTGCAGAAATCGCAACGCTCACTCACTCAACCTGCACATCTGCCT
CAGCCTCTCTGACAGCGCGCGGCCGGCTGGCGGAACACGCACTCAACGCG
CCCGCGCTGCGCCGCTGGTGCTACTTGCGCAGGTCCCCGGCACTGTTGAC
ACGAGCTATCGGCGCTGCGAGGCACTTGGCTGCACCAAGTGGCCGCTGTA
CGCGTACGAGGGGGAGAAAGCGCGCTTCTGCTCCGCCCACAGGGAGCCGG
GCATGAACGACGTCCGAAGCCGCAGGTGCCAACATGCTGGGTGCCTGCAC
CAGCCCAGCTACGGGATGGAGGGCTTCCGCGCGCAGTTCTGCAGGCAAGG
CGCTGACACTCCCGACATGGTCGACGTCGTCAGCAAGCGCTGCAAGCAGG
CCGAGTGCCGCCGCCGGCCGCTCTACGGCTTTGAGGGCCAGAAGGCGCAG
TTCTGCTCGTTGCATAAAGAAGAGGGTATGGTAGACGTCATGAACCGCCG
CTGCAAGGTGCGCGGCTGCAAGAAGCGCCCCCTCGTGGGCATCCGCTTCT
GCGCCGAGCACAGCAACAACGCAGACGCGGAC

protein sequence of jgi.p|Trimin1|174651

>Trimin1|174651|e_gw1.116.87.1 ID=Trimin1|174651|e_gw1.116.87.1|Name=jgi.p|Trimin1|174651|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp
MSCRNRNAHSLNLHICLSLSDSARPAGGTRTQRARAAPLVLLAQVPGTVD
TSYRRCEALGCTKWPLYAYEGEKARFCSAHREPGMNDVRSRRCQHAGCLH
QPSYGMEGFRAQFCRQGADTPDMVDVVSKRCKQAECRRRPLYGFEGQKAQ
FCSLHKEEGMVDVMNRRCKVRGCKKRPLVGIRFCAEHSNNADAD

mRNA from alignment at Contig_116:181865..184771+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11276 ID=mRNA_11276|Name=jgi.p|Trimin1|174651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2907bp|location=Sequence derived from alignment at Contig_116:181865..184771+ (Tribonema minus UTEX_B_3156 )
ATGTCCTGCAGAAATCGCAACGCTCACTCACTCAACCTGCACATCTGCCT
CAGCCTCTCTGACAGCGCGCGGCCGGCTGGCGGAACACGCACTCAACGCG
CCCGCGCTGCGCCGCTGGTGCTACTTGCGCAGGTCCCCGGCACTGTTGAC
ACGAGCTATCGGCGCTGCGAGGCACTTGGCTGCACCAAGTGGCCGCTGTA
CGCGTACGAGGGGGAGAAAGCGCGCTTCTGCTCCGCCCACAGGGAGCCGG
GCATGAACGACGTGAGTGCCGGCGCGCACGCCGCGGTCGCCTCGCGGACC
GCGCCCGCTGAGGCATGCCGCAGCTGTGTGACGCAGCTAGTTGAAGTTGG
CACTCCACAGAGTGTTGGCCAACAGTGGTGGCGCCAGCGCTTAGCGCAGC
AGCCCCGCGGCACGAGCCGTGGGGGCCCCTGCAGATGCTGCGCACTCGGC
AGCTGCCTACCCAGCAAAGTTTCGAGATGGGCAGAGGCGCCAAGTGGGCC
TCGCACGATGTGGTTGAACTTGAAGTTGGAGTCTCACGGCACACCACTTG
TGAGCCCACGCGTGTGCTTGCCATCTGGTTGCTCGCGGCGGCGGCGGTGC
GACTTCGCAAAGGCGCACGCAGGCCGGACCCTGGCACGTCATTTTGCAAA
ACGCCACCTCGCCTGTTTCGCGCACCTCTACAGGCCCAATCCCCATGTAC
CTGCCTGTACGGCATCTCTGCCCCCTCTTGCCCGCGGCTGCCAAGGCCAC
ATGCCACCAGCCATGGCTTGCAAAGCGCGCTTGCTTCCTGCACCACATTC
CCATTCTCACGGCGCGCTGCATGTCAATGCGTCGTCATACGTGGTGCGTG
CAGGTCCGAAGCCGCAGGTGCCAACATGCTGGGTGCCTGCACCAGCCCAG
CTACGGGATGGAGGGCTTCCGCGCGCAGTTCTGCAGGCAAGGCGCTGACA
CTGTGCGCGCGAGTGCATGAATGAGGCATAGAGTCTGTCGGCGAGTCGCC
GAGTCATGCACAGGGTCTTGCACGAGTCATACTTGAACGAGGCCCGGAGT
CGCGTGAACGAGTCGCCAGGCGCAAGTCACTCGCGTGTTGCACCCCCTCG
TGCGTCTTCTCAGCGCCGCAGCTGCCATGCCTGTTTTCAGGGCGCGTGCT
TCTCAGCGCCCTGGGTCATCGAGCCGCTTGTGCAATCAGAAGCCGTTGAG
CAATGCTGCCGTGCTCGCCGACGCACTGCCACCTCTCGCCTGCCCGCTTG
CGCAATCGCACCGCAGCGCGACCCGTTAGCAGCCATGCCTCGATTACATC
CTTGGCGCCGATGTGTGGTGCACGATTCCGCCTGCCGTCGCGGCCCGAAA
CGCCGCTGGCTGCGCATGGTCACGATGATGTACGCCATCGCCGTGGTCAG
CGTTCTGAAAACCCAGTTGCGGAAACCGTTGCTGAGCGTTGTGCCCGCTT
CTGCTGACTCACCGCGCGCGACAGCGCTCACAAGGAGCCCGACATGGTCG
ACGTCGTCAGCAAGCGCTGCAAGCAGGCCGAGTGCCGCCGCCGGCCGCTC
TACGGCTTTGAGGGCCAGAAGGCGCAGTTCTGCTCGTTGCATAAAGAAGA
GGTGAGCATTCGGTCGTTGAGCAGGACACACTAGATGTATGTACGCGCAC
TCCCCCTCCCCCCTCTCCCTCCCCTTCACCTCCCGCCCCCTGCTTGGCAC
TGCCCCCCCCCTTGCACCCTTTTGGCCCCCTTTCCTCCCCGCCCCCCCTC
CTCCGCCCCCCCCTACACATGACTATATAGCTCAAGACCTCTGCACTTCA
ACGCCCCTCGCGTTGCCCTACCTCTGCCCCTCTCTGGTGCCCCTGTGTTG
ACTGCTCATTAAGGCGACATCGGAAAGCGTTGTTGCTATGCGTAGGTTGA
GGATGAGGTTAGAGGTAGCCTTCCTTGCTATTCCACCTTGTGCGCACACA
CTTTCCTTGCTCATGAATATCTACGGTGCCAATGGTGGCGGCCACGTCCT
TTGTCAGTTGTTTCCGCTTGCGGTCTTGCTGCACGCTGCAGCGGACGCTG
CGCATGGTTTGTGTCCCCTCAGGTCTAACGCCAACTCTATCCCTCACTAA
TGCAGCAGCAGCAGCAGCTGTTGCACGCAATGACTACAGCAGCCCTGCCA
GCACGTGTTCCAGTGCCTGCTGCTGGCGTAAATGTAGCTGTGCCATGTGA
CAGCACACTAGCTCTAGGGTTGGGACACCTAGCTTTAGGGTTGGGACACT
AGGGTTAGGGCTAGCGCTAGGGGGGTTAGACCTAGGCTTAGGCACATGTT
CCTGTACGTCACAGTGAAGGACGGCAGTTGCAGTATGCACACAAAGTCAA
GCTCTGACTGCTCACGACCGTGTGACAGCACATTCGCCCAGGAGAAGGGT
GTCAAGGGTGAGGGTCTGGTCAGGGTTTAGAGCTGGGTTAGGGCTAGGGT
TAGGGGTAGGGGTAGGATTAGGGCTAGGATCGGGGTTAGGGTTAGGGTCA
GGGTAGGTCAGGCGCAACCGCATGACACCAGTAGTCAAGCAGCACACGAC
GCGCTCTGGGCGCTGACAGCCTCCATGTACCGATTCTGCTGCTACACCTG
CGCACCGCACGCTGCGGTGCGGCGCGCGCAGGTGACTCTCCTCCCCTGCG
ACCTCACCTGCACAGCTTAGCTCACGTACCTGTCACAGACCATGCTATGT
TGCCACCTGACAACAAGCACTGCTGTCGCCTCTGACTCCCCGCTGCCCCC
CCCCCCCCTCCCCCCCCCCCCCCCCCCCGGGCCCTCCCCCCTACCCCAGG
GTATGGTAGACGTCATGAACCGCCGCTGCAAGGTGCGCGGCTGCAAGAAG
CGCCCCCTCGTGGGCATCCGCTTCTGCGCCGAGCACAGCAACAACGCAGA
CGCGGAC

Coding sequence (CDS) from alignment at Contig_116:181865..184771+

>mRNA_11276 ID=mRNA_11276|Name=jgi.p|Trimin1|174651|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_116:181865..184771+ (Tribonema minus UTEX_B_3156 )
ATGTCCTGCAGAAATCGCAACGCTCACTCACTCAACCTGCACATCTGCCT
CAGCCTCTCTGACAGCGCGCGGCCGGCTGGCGGAACACGCACTCAACGCG
CCCGCGCTGCGCCGCTGGTGCTACTTGCGCAGGTCCCCGGCACTGTTGAC
ACGAGCTATCGGCGCTGCGAGGCACTTGGCTGCACCAAGTGGCCGCTGTA
CGCGTACGAGGGGGAGAAAGCGCGCTTCTGCTCCGCCCACAGGGAGCCGG
GCATGAACGACGTCCGAAGCCGCAGGTGCCAACATGCTGGGTGCCTGCAC
CAGCCCAGCTACGGGATGGAGGGCTTCCGCGCGCAGTTCTGCAGGCAAGG
CGCTGACACTCCCGACATGGTCGACGTCGTCAGCAAGCGCTGCAAGCAGG
CCGAGTGCCGCCGCCGGCCGCTCTACGGCTTTGAGGGCCAGAAGGCGCAG
TTCTGCTCGTTGCATAAAGAAGAGGGTATGGTAGACGTCATGAACCGCCG
CTGCAAGGTGCGCGGCTGCAAGAAGCGCCCCCTCGTGGGCATCCGCTTCT
GCGCCGAGCACAGCAACAACGCAGACGCGGAC