mRNA_11219 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130868
Unique NamemRNA_11219
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|130868 vs. uniprot
Match: A0A835YMS4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS4_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.950e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 VTLQGVDRPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 246
            VTLQGVDRPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG
Sbjct:    1 VTLQGVDRPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 82
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BLAST of jgi.p|Trimin1|130868 vs. uniprot
Match: A0A835YKZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.760e-22
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 VTLQGVDRPIRHALSHGRLRD-VDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 246
            VT+QG+DRP+RH++ +G   D VD +N  PT+ SQAL + GRECP L  YV+ R++ L+ +  + G++RD AK V LRAMYGG
Sbjct:   89 VTMQGIDRPVRHSMGYGEYGDLVDQINAHPTICSQALHKLGRECPFLDLYVAERETWLQAITAECGIDRDGAKGVMLRAMYGG 171
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BLAST of jgi.p|Trimin1|130868 vs. uniprot
Match: A0A250XQS3_9CHLO (DUF5906 domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQS3_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 2.030e-13
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   22 RPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 246
            R +R  L+  R  DVDVVNCQP LL Q L+  G  C  L +YV  RD+ L  +++  G++RD AK +F+R +YGG
Sbjct:  171 REVRATLAADRYVDVDVVNCQPVLLRQRLENAGFACECLAQYVDDRDACLSRVMKACGVDRDAAKQLFVRMVYGG 245
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BLAST of jgi.p|Trimin1|130868 vs. uniprot
Match: A0A835Z0P8_9STRA (SF3 helicase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.120e-8
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   10 QGVDRPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 246
            Q   RPIRH L+HG   D D+  C PT+  Q L R G + P + +Y     +   E++E  GL++D AK + L+A+  G
Sbjct:   98 QNFPRPIRHLLAHGLHSDADIDCCHPTITHQYLARLGMDAPVIRDYSENSKAWRTEIMEDLGLDKDQAKKL-LQAVCNG 175
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BLAST of jgi.p|Trimin1|130868 vs. uniprot
Match: A0A2J7ZNB7_9CHLO (Putative helicase n=3 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZNB7_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 2.130e-8
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:    7 LQGVDRPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYVSARDSKLKELVEQYGLERDDAKNVFLRAMYGG 246
            + G+ R +R  L      DVD+VN QPTL  Q           L EYV  R S+L+E+ E   ++RD AK +FLR M+GG
Sbjct:    1 MSGMRREVRACLGSELYHDVDMVNSQPTLCLQYFSARSLPTTYLGEYVRDRASRLREVQEAMRVDRDAAKGLFLRLMFGG 80
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130868 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YMS4_9STRA2.950e-53100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YKZ5_9STRA3.760e-2251.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A250XQS3_9CHLO2.030e-1346.67DUF5906 domain-containing protein (Fragment) n=1 T... [more]
A0A835Z0P8_9STRA2.120e-837.97SF3 helicase domain-containing protein n=1 Tax=Tri... [more]
A0A2J7ZNB7_9CHLO2.130e-841.25Putative helicase n=3 Tax=Tetrabaena socialis TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_79contigContig_79:483025..483270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130868|gw1.79.11.1
DescriptionVirulence-associated protein E
COG categoryS
Max annot lvl10239|Viruses
EggNOG OGs4QCHV@10239|Viruses
Evalue1.36e-09
Seed ortholog938080.F2Y0M9_9VIRU
Hectar predicted targeting categoryother localisation
TranscriptId131190
TrackFilteredModels1
ProteinId130868
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130868gene_11219Tribonema minus UTEX_B_3156 geneContig_79 483025..483270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11219_1exon_11219_1Tribonema minus UTEX_B_3156 exonContig_79 483025..483270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11219CDS_11219Tribonema minus UTEX_B_3156 CDSContig_79 483025..483270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130868Trimin1|130868|gw1.79.11.1Tribonema minus UTEX_B_3156 polypeptideContig_79 483025..483270 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11219 ID=mRNA_11219|Name=jgi.p|Trimin1|130868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_79:483025..483270+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGACTCTACAGGGAGTGGATCGACCGATACGGCACGCCCTATCCCACGG
GCGACTAAGGGATGTTGATGTGGTGAATTGTCAGCCGACTCTGCTGTCAC
AGGCGCTGCAGCGATGCGGGCGTGAGTGCCCTGCCCTACTTGAATACGTG
AGTGCCCGAGACTCCAAGCTTAAGGAGCTGGTGGAGCAGTACGGCCTGGA
AAGAGATGACGCCAAAAACGTGTTCCTCAGAGCGATGTACGGAGGA
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protein sequence of jgi.p|Trimin1|130868

>Trimin1|130868|gw1.79.11.1 ID=Trimin1|130868|gw1.79.11.1|Name=jgi.p|Trimin1|130868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
VTLQGVDRPIRHALSHGRLRDVDVVNCQPTLLSQALQRCGRECPALLEYV
SARDSKLKELVEQYGLERDDAKNVFLRAMYGG
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mRNA from alignment at Contig_79:483025..483270+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11219 ID=mRNA_11219|Name=jgi.p|Trimin1|130868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_79:483025..483270+ (Tribonema minus UTEX_B_3156 )
GTGACTCTACAGGGAGTGGATCGACCGATACGGCACGCCCTATCCCACGG
GCGACTAAGGGATGTTGATGTGGTGAATTGTCAGCCGACTCTGCTGTCAC
AGGCGCTGCAGCGATGCGGGCGTGAGTGCCCTGCCCTACTTGAATACGTG
AGTGCCCGAGACTCCAAGCTTAAGGAGCTGGTGGAGCAGTACGGCCTGGA
AAGAGATGACGCCAAAAACGTGTTCCTCAGAGCGATGTACGGAGGA
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Coding sequence (CDS) from alignment at Contig_79:483025..483270+

>mRNA_11219 ID=mRNA_11219|Name=jgi.p|Trimin1|130868|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_79:483025..483270+ (Tribonema minus UTEX_B_3156 )
GTGACTCTACAGGGAGTGGATCGACCGATACGGCACGCCCTATCCCACGG
GCGACTAAGGGATGTTGATGTGGTGAATTGTCAGCCGACTCTGCTGTCAC
AGGCGCTGCAGCGATGCGGGCGTGAGTGCCCTGCCCTACTTGAATACGTG
AGTGCCCGAGACTCCAAGCTTAAGGAGCTGGTGGAGCAGTACGGCCTGGA
AAGAGATGACGCCAAAAACGTGTTCCTCAGAGCGATGTACGGAGGA
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