mRNA_11156 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168611
Unique NamemRNA_11156
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A836CC47_9STRA (Chaperonin 10-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC47_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 1.220e-146
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1
Query:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW
Sbjct:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 207          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: D7G2W2_ECTSI (GroES chaperonin, plastidal n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W2_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 6.850e-63
Identity = 95/209 (45.45%), Postives = 151/209 (72.25%), Query Frame = 1
Query:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRI--VRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            ++R PL P+ DT++VK+ + K  T+GG+FLP M  V+ T GTV A G GKRHW+TG   P+ V+ G++V++G FDG++V+Y G++HLL+R  + L+ YEG+  +  TA+M+GDR+L+++  V +   + A+GV++A  A R  + T+G+VVK+GPGR+ P+G  +P+ C VGD +K++DFAAE + +E L+ D  + V I+N D++AKW
Sbjct:   81 ELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAVGEGKRHWDTGVKIPITVEVGERVVYGNFDGTSVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 289          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC)

HSP 1 Score: 171 bits (434), Expect = 4.600e-50
Identity = 85/207 (41.06%), Postives = 140/207 (67.63%), Query Frame = 1
Query:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            +I   L P  + ++VK+A  +++T+GG+ L    K++ T GTV++AGPGK H E+G L+PM V+ G  V++G++DG+ V+Y+G  H L+R DD L+ ++GD  +  TA ++ D +LV++  + E T ASG+++AA A +  K + G VVK+GPGR+A NG+ + +   VGD +K+RDFA   V +E     G++F V++ TD++AK+
Sbjct:   42 EIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEET-ASGLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIE-----GDEFSVVRMTDILAKF 242          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 8.940e-50
Identity = 86/207 (41.55%), Postives = 138/207 (66.67%), Query Frame = 1
Query:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            +I  PL+P+ + ++VK+ + ++ + GG+ LP   K +PT G VVAAGPG++H ET  L PM V+PG KVL+G+FDG +V Y+GA H+L+R DD LLT+ G + +    + V DRILV++ +  E  K++G ++ A +  + + T GEV+K+GPGRIA  G+   ++   GD +KF+DFA        +K+  E+++V+ + DV+A+W
Sbjct:   54 EIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQE--KSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGT-----EIKIQDENYLVMYSVDVLARW 253          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.970e-48
Identity = 86/207 (41.55%), Postives = 134/207 (64.73%), Query Frame = 1
Query:    4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAP-SAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            I  PL+P+ + I+VK+ +  + T GG+FLP   K +P+ G VVAAG GK H +TG + P  V  G +VL+G+FDG++VKY G DH L++ DD LL++ GDA  +    + V D +LV++ +  E T ASG+ +AA  + + + T G VVK G GR+A +G  +P+   VG+ +KF+D+A        +++DGED++V++  D +AKW
Sbjct:   38 IGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEET-ASGIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGA-----DIRLDGEDYIVVRVPDCLAKW 238          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.700e-48
Identity = 83/206 (40.29%), Postives = 131/206 (63.59%), Query Frame = 1
Query:    4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            IR PL+P+ + I+VK+ +    T GG+ LP     +P+ G VVA GPG+ H  T +L PM V PGQ+V++ ++ G  VKY+G DH L+  DD LL YEG+ P+AA  +M+ D++LV+I R   RT  +G+V++A  A ++ ++ G+VV +GPGR A NG+  P     G+ +KFR++A   + +E+     E + V++  D ++KW
Sbjct:   61 IRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTD-TGIVISAQTAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLES-----ESYAVVRMVDCLSKW 260          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS)

HSP 1 Score: 164 bits (416), Expect = 2.240e-47
Identity = 82/207 (39.61%), Postives = 138/207 (66.67%), Query Frame = 1
Query:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            +I   L P  + ++VK+AE +E+T GG+ L    K++ T GTV++ GPGK H E+G L+PM V PG  V++G++DG+ + Y+G  H L+R DD L+ ++G   +     +V D +LV++  + E T + G+++AA + +  K + GEVVK+GPGR+A NG+ + +  +VGD++KFRDFA   V     +++GE++ V++ TD++AK+
Sbjct:   41 EIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDGKL-TLDNVDVVSDNVLVKVNDDQEAT-SGGLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEV-----QIEGEEYAVVRMTDILAKF 240          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A7S2XVL1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XVL1_9STRA)

HSP 1 Score: 163 bits (413), Expect = 7.300e-47
Identity = 79/207 (38.16%), Postives = 132/207 (63.77%), Query Frame = 1
Query:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            +I   LKP  + ++VKLA  +E T GG+FL    K++ T GTV++ GPGK H E+G  + M V PG  V++G++DG+ ++YN   H L+R DD ++ + G+  +  + ++ G+ +L+ +    +   ASG+++AA   R  K + GE+VK+GPG++A NGK + +   VG  +KFRDFA        +K+DG++F V++ TD++AK+
Sbjct:   45 KIEGELKPTNNFVLVKLAPIEESTSGGIFLTGSAKIEKTEGTVISVGPGKTHTESGVTFDMPVIPGDGVVYGKYDGTELEYNDERHTLIRDDDIMVKFTGEL-TLDSVEVTGENVLIAVKSSDDEESASGLLIAAQTKRGSKPSTGEIVKVGPGKMASNGKLMDMDVEVGAMVKFRDFAGN-----EIKIDGKEFAVVRYTDLLAKF 245          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A7S2KVZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVZ8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.080e-44
Identity = 77/185 (41.62%), Postives = 119/185 (64.32%), Query Frame = 1
Query:    4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAME 558
            I   L P  + I+VK+AE +++T+GG+ L    K + T G VV+ GPG+ H E+G  +PM V PG+ VL+G++DG+ + Y+G  H L+R  D ++ Y GD  +     +  D +LV++ R  E   ASG+++A+ A+   K + G VVK+GPGR+A NG+ + +  AVGD+IKFRDFA   V++E
Sbjct:   46 IEGALVPCTNFILVKIAEAEDQTEGGIILSGRAKQKKTEGVVVSIGPGRTHQESGITFPMPVSPGEGVLYGKYDGTELDYDGCKHTLVRDTDIMVKYSGDKMTLENCDVTSDSVLVKVNRSGEEEMASGLLIASSASGNSKPSTGTVVKVGPGRMAQNGEMMDMDVAVGDEIKFRDFAGNEVSIE 230          
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.630e-43
Identity = 75/206 (36.41%), Postives = 132/206 (64.08%), Query Frame = 1
Query:    4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
            I + L+P+ + ++VKL +   +T GG+ +P   K +P  G  VA GPG+ H ETG+L P+ V+ G++V++G + G+ +KYN  DH+L+R D+ LL Y GD     T + VGD++LV + +E E+  ASG+V++  A++  +   G +++ GPGR++  G+ +P+     D+IKFR++  E V      ++G +++V++  D++AKW
Sbjct:   38 ITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKE-EKQTASGIVLSPEASKS-RVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEV-----NIEGTEYMVVRANDILAKW 236          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC47_9STRA1.220e-146100.00Chaperonin 10-like protein (Fragment) n=1 Tax=Trib... [more]
D7G2W2_ECTSI6.850e-6345.45GroES chaperonin, plastidal n=2 Tax=Ectocarpus Tax... [more]
K0T1C8_THAOC4.600e-5041.06Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
W7TNB8_9STRA8.940e-5041.5520 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A8J2WID0_9STRA1.970e-4841.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835YHA6_9STRA3.700e-4840.29Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
B8CCQ7_THAPS2.240e-4739.61Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2XVL1_9STRA7.300e-4738.16Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2KVZ8_9STRA7.080e-4441.62Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7R9UAA2_9STRA1.630e-4336.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:699639..702843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168611|e_gw1.59.97.1
BRITEko00000,ko03029,ko03110
KEGG koko:K04078
DescriptionBelongs to the GroES chaperonin family
COG categoryO
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota,2XGQX@2836|Bacillariophyta
Evalue7.54e-51
Seed ortholog159749.K0T1C8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiongroES chaperonin, plastidal
Ec32 orthologEc-09_004690.1
TranscriptId168933
TrackFilteredModels1
ProteinId168611
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168611gene_11156Tribonema minus UTEX_B_3156 geneContig_59 699639..702843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168611Trimin1|168611|e_gw1.59.97.1Tribonema minus UTEX_B_3156 polypeptideContig_59 699639..702843 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11156_3exon_11156_3Tribonema minus UTEX_B_3156 exonContig_59 699639..699821 -
exon_11156_2exon_11156_2Tribonema minus UTEX_B_3156 exonContig_59 700521..700757 -
exon_11156_1exon_11156_1Tribonema minus UTEX_B_3156 exonContig_59 702640..702843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11156CDS_11156Tribonema minus UTEX_B_3156 CDSContig_59 702640..702843 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11156 ID=mRNA_11156|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_59:699639..702843- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGATTCGCGCGCCGCTTAAGCCCATTGGAGACACAATCATAGTAAAGCT
GGCGGAGCCCAAGGAGAAGACGGATGGGGGCCTGTTCTTGCCAACAATGG
ACAAGGTACAGCCAACGACAGGGACGGTGGTGGCTGCGGGGCCGGGGAAG
CGGCACTGGGAGACGGGGCAGCTGTACCCCATGGGAGTACAACCAGGACA
GAAGGTCCTCTTTGGGCGCTTCGACGGCTCCACCGTCAAGTACAACGGCG
CGGACCACCTCCTCCTGCGCGGCGACGACTGCCTGCTCACGTACGAGGGC
GACGCGCCGAGCGCCGCCACGGCGCAGATGGTCGGCGACCGCATCCTCGT
GCGCATCGTGCGCGAGCTGGAGAGGACCAAGGCGTCGGGCGTCGTGGTGG
CGGCGGTCGCGGCGCGCGAGCAGAAGGAGACCATGGGGGAGGTCGTCAAG
ATGGGGCCTGGCAGGATTGCGCCGAACGGCAAGCCGCTGCCGCTGCAGTG
CGCGGTGGGTGACCAGATCAAGTTCCGCGACTTTGCCGCAGAGTGGGTGG
CGATGGAGACGCTCAAAGTTGACGGCGAGGACTTCGTGGTCATCAAGAAC
ACGGATGTCATTGCCAAGTGGTGA
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protein sequence of jgi.p|Trimin1|168611

>Trimin1|168611|e_gw1.59.97.1 ID=Trimin1|168611|e_gw1.59.97.1|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGK
RHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEG
DAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVK
MGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKN
TDVIAKW*
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mRNA from alignment at Contig_59:699639..702843-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11156 ID=mRNA_11156|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3205bp|location=Sequence derived from alignment at Contig_59:699639..702843- (Tribonema minus UTEX_B_3156 )
CAGATTCGCGCGCCGCTTAAGCCCATTGGAGACACAATCATAGTAAAGCT GGCGGAGCCCAAGGAGAAGACGGATGGGGGCCTGTTCTTGCCAACAATGG ACAAGGTACAGCCAACGACAGGGACGGTGGTGGCTGCGGGGCCGGGGAAG CGGCACTGGGAGACGGGGCAGCTGTACCCCATGGGAGTACAACCAGGACA GAAGGTGCGCAGTTTTCCTCGCAGTCTATAGGCGCAATGTACAAGTTTCT AAACGTACATGCACACGTTTCACAGTTCACATGCACTAAAATGTCAAGCT TCTCACAACGTAATGTCAAAGTTGCACATGTACATGTACAACGTCATGTT CGCTGGAGCCGCTAGTCGCGCGGTGAACCCTGTACAGAGTGGCGTGAGCG TTTGCGCTTTGCAGCACTCGACGGGGCATGCTCGCGCTGACACATTTCAT GATGGAATGTTGAGCAGTGCTGCTCTTACGGCTTCACTCTAGCGGCGCCT GGCTTGCCGCCCAACCTAGATGCCTGCAGTGGATGCCGTGCTGCAGTTCA TTGGTAGCGCCAGTTTTGCATCGGGGGTCGCTGTGTCGTTGCGCGCTGAG CTTGCGACCGGCTCATGGCGCTGAGCGCGGCACGGCACCGAGTGTTACCG GCAAAGGTGCCAGTTTGAGCACTGGCTGGTTGCAGCTGCCTGACCACTTC GCATATGCTGCAAGTATGCAGCAGCAGCATTCAATGTGGCGGTGGCCAGG CTCTTCATCCAGCGCGCTCCTTTCAGGGCGAGCGCGGTCATTCAGCATGC CATGACATCAGCGCTCAGCGTGCGTATGGCGGAAGCCGCCTTGGCGCTGC CGGCGCTGTCACGTCGGCAGTTGCTGCATTGTCGAGCTCACGCATTTGAA GCGCCTGCCCGACAGGCAGGCGTGCGCACGGCAGGCGGTGTCACCTGTAG GCCGCAAGAAACCAGTTGCACAACACTAGTCTACAAGGACAGAATGCATC TACAAACATTATACTTCGGGGATTGAACGAATCTACAGAACAATAGACTT TAAAGGAGGACATTCAAATTGACAGATTGTATGCATAGGGCACCTGACCA GAGTCGCCAGACGATCCAAGCGTAATAGCGTCAGATTGTTGCGCCCACCT GCCCTGGGACAGTGCTCATCACCTGATGGCGCCGTGCAGACCCATGCCGC ATGCATGGTGCAGCGCGAACAAACGGATTCGACTAGAGCGTGCAGTCCCG TCCGTACTGCCGCATAGACGAGCGCTTCTGAAACGGCAGAGTTCAGCGTG GCGGCAGCAGCGGGGGCCGTGTCCTGCTGCTGTGCACTGAGCGCTGCATT TCCTTCATGAATACGAATCAAAAGATCGTAGAGGTCTAGGTGACAAGGGA TGGTTAGCCGCATGTGCCTTCCGCCAAAACCGTGGTCGCAGCTGCTGCAG CTTGATGTTGTGTTATTAGTATGTATGTTTCGTGGGCGCTCTCGAAGCGC TGTCGCTGTTGCAGCGCCGGCGACTGCAGCCCCGACAGCGCTCAGCCTGC GCTGCCGCCGCCGCCTCTTGCACGTGAGCGCTGCCGCGGCGCGGCGACTC AGCGCAACGGCGGTCGCTGACTTGCGTCACTTGTCTCCCTGCAGACTTTA CACGACTGTCTTCCAGCGCAAACAGACGGGCGAGGCACAGCGCACGTTCA GCAGTGCGCAAACGCGCAACGTGATTGCGCTGGAGTAGGAACGGGGCTGC ACGACGTGCATCGAAGAGCGCTGTGGCGCTCGCACATGCGCTCACCCGTC TGCTGCGCGTGCAGCGGCGGCTTCTGCGCCTAGCGCAACGGTGTCGGCTG CCGCTCCCGCCTGAGGGCAAACTGCGCACCGTGCCTTAAGGGCGATGCGC CCAAGTGTCAGCACAGCTCCGCAGATATAAGAGCTGATTTCTTGTAGCTC TTGCGACTCCCCGCGCCCTCGCAGTCCCTTTCAGGCGGTTTGAGAGCTCC ACTCCACCACCATTCACCCATGCCTTGTGAACTCTGACGCCTAACCCGCC CACCCTACCCCCCCCCCCCCCCCCCCCCCCCCCAAGGTCCTCTTTGGGCG CTTCGACGGCTCCACCGTCAAGTACAACGGCGCGGACCACCTCCTCCTGC GCGGCGACGACTGCCTGCTCACGTACGAGGGCGACGCGCCGAGCGCCGCC ACGGCGCAGATGGTCGGCGACCGCATCCTCGTGCGCATCGTGCGCGAGCT GGAGAGGACCAAGGCGTCGGGCGTCGTGGTGGCGGCGGTCGCGGCGCGCG AGCAGAAGGAGACCATGGGGGAGGTGCGCGCGGCGCCGCTGCATTTGCTG CCATTGTTTGTGTTGGTGGTTGTGCTGAGAAGCCGTTTCGGCGCGGTGCT TCAAGGGCATTGCTAGCTGCCATCGTTGGCGGGTCATGGTGCGAAGTAGT CGTTTTGGTGCTTGAAGTAGATGGCACGCTGAGATTGCGGTGGCGCGCGC GCGCACAGGAGGAGACTGCGGGACACGCGCTTCTTGCCGCTCGGCATTTC TTGACAGTATTCAGTAGGAATAGGCATCGATGTGTTACCGCCAGAGCTGC TGCGGTGGTGGTGAAACGGCTGCAGGTCGTAGCACGCGAGCGGAATGAGC CCACACGGAAGTGCACATGGCAGTTGCAGCGGTGCTGCAGCCCGTTTGGA CGTGGCAATGGGCGTGCATGCGTGGCGAGCGCGTGTGCATGCTGCACTTT GATTTCCAGGCGCCTCAATCAGCGTCCTCACCTCAGTGCAACAGTATAGC TGCCAGTTTTGCGTAAACCACGCAGCCGGCGCATTGCTGTGTCACAACTT CAACTTCAAGCTGACTGCCGCTGCTGCTCGCACGCGCCGCTGTCCCCAGC TCAGTTAACAGCGTAGCTTTTTGCTCGCATGACACCACGCAGCGCGTCGC AAGAGTTGTAACTTCAACTTCAAGCTGGTCAACTGATCAACCGCTCCTGC TTGCATGCTCCGCTGCGCGCAGGTCGTCAAGATGGGGCCTGGCAGGATTG CGCCGAACGGCAAGCCGCTGCCGCTGCAGTGCGCGGTGGGTGACCAGATC AAGTTCCGCGACTTTGCCGCAGAGTGGGTGGCGATGGAGACGCTCAAAGT TGACGGCGAGGACTTCGTGGTCATCAAGAACACGGATGTCATTGCCAAGT GGTGA
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Coding sequence (CDS) from alignment at Contig_59:699639..702843-

>mRNA_11156 ID=mRNA_11156|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_59:699639..702843- (Tribonema minus UTEX_B_3156 )
CAGATTCGCGCGCCGCTTAAGCCCATTGGAGACACAATCATAGTAAAGCT
GGCGGAGCCCAAGGAGAAGACGGATGGGGGCCTGTTCTTGCCAACAATGG
ACAAGGTACAGCCAACGACAGGGACGGTGGTGGCTGCGGGGCCGGGGAAG
CGGCACTGGGAGACGGGGCAGCTGTACCCCATGGGAGTACAACCAGGACA
GAAGGTCCTCTTTGGGCGCTTCGACGGCTCCACCGTCAAGTACAACGGCG
CGGACCACCTCCTCCTGCGCGGCGACGACTGCCTGCTCACGTACGAGGGC
GACGCGCCGAGCGCCGCCACGGCGCAGATGGTCGGCGACCGCATCCTCGT
GCGCATCGTGCGCGAGCTGGAGAGGACCAAGGCGTCGGGCGTCGTGGTGG
CGGCGGTCGCGGCGCGCGAGCAGAAGGAGACCATGGGGGAGGTCGTCAAG
ATGGGGCCTGGCAGGATTGCGCCGAACGGCAAGCCGCTGCCGCTGCAGTG
CGCGGTGGGTGACCAGATCAAGTTCCGCGACTTTGCCGCAGAGTGGGTGG
CGATGGAGACGCTCAAAGTTGACGGCGAGGACTTCGTGGTCATCAAGAAC
ACGGATGTCATTGCCAAGTGGTGA
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