mRNA_11145 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350234
Unique NamemRNA_11145
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.150e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:   44 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 208
            MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 55
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.100e-23
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 2 
Query:   44 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 208
            MSSSGPSKMTGTKDE+LGSAKATIGSTIGNHQMEAEGHTQNK GTA+K AA  KQ
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQ 55
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.240e-18
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 2 
Query:   44 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 208
            MSSSGPSK+TGTKDE+LGSAKATIGSTIGNH+MEAEG+ Q++ GT E +AA AKQ
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQ 55
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.910e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 2 
Query:   44 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 208
            MSSSGPSK+  TKD+++G  KAT+G TIGNHQMEAEG+ Q++ GT EK  AAAKQ
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQ 55
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.290e-14
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 2 
Query:   44 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 208
            MSSSGPSK++ TKD+++G  KAT+G TIGNH MEAEG+ Q+  GTAEK+AA AKQ
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQ 55
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z4V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.470e-11
Identity = 55/113 (48.67%), Postives = 67/113 (59.29%), Query Frame = -3 
Query:   47 GYLCGVRLGRPL--GLVHLPLPLHALIA*HLASSFLCMAKE----AVASALHL-----LLGGSRVLLCGSR-LVLGVAFSLHLVVADGAADGGLGGAQDLVLGAGHLAGSRGR 349
            G L G+++   L  GLV L L LH LIA  L S  L + K     A+  + HL     ++G +  LL G R L+LGV FSLHLVVADG ADGGLG + DLV  +GHL   RGR
Sbjct:   98 GVLLGLQIIAHLSFGLVDLALRLHPLIAQDLTSGVLLIRKRENERAMCGSAHLQVAVDVVGSALALLLGRRGLLLGVTFSLHLVVADGLADGGLGLSDDLVRRSGHLQQERGR 210
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.560e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:   44 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 205
            M SSGP K+  T+D+++G  K T+G TIGNH+MEAEGH Q   GTAEK AAAAK
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAK 54
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A137NRC1_CONC2 (CsbD domain-containing protein n=2 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NRC1_CONC2)

HSP 1 Score: 53.5 bits (127), Expect = 5.530e-6
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:   53 SGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 205
            S PSK     ++ +GS K T+GS +GNH+M+A+G+ QNK G AE++AA  K
Sbjct:    2 SDPSKTNAQYNQAMGSVKETVGSALGNHEMQAKGNVQNKQGHAEQSAAETK 52
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A137NR95_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NR95_CONC2)

HSP 1 Score: 53.5 bits (127), Expect = 3.640e-5
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:   14 NISKLLLFENMSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 205
            N  K+L+   MS   PSK     ++ +GS K T+GS +GNH+M+A+G+ QNK G AE++AA  K
Sbjct:  103 NNQKILVKITMSD--PSKTNAQYNQAMGSVKETVGSALGNHEMQAKGNVQNKQGHAEQSAAETK 164
[Close]
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A137NRH7_CONC2 (CsbD domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NRH7_CONC2)

HSP 1 Score: 50.4 bits (119), Expect = 7.470e-5
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 2 
Query:   53 SGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 205
            S PSK+    ++ +G+AK  +GS IGN  +EA+GH QNK G AE+ AA  K
Sbjct:    2 SEPSKINAQYNQAMGTAKEVLGSAIGNTNLEAKGHIQNKEGKAEQTAAETK 52
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YNR6_9STRA4.150e-26100.00Putative cruciform DNA binding protein n=2 Tax=Tri... [more]
A0A835YX54_9STRA8.100e-2389.09Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A836CHS6_9STRA9.240e-1878.18Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z1U0_9STRA5.910e-1567.27DNA binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835Z1D8_9STRA2.290e-1467.27Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z4V5_9STRA5.470e-1148.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2J6_9STRA8.560e-1162.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A137NRC1_CONC25.530e-649.02CsbD domain-containing protein n=2 Tax=Conidiobolu... [more]
A0A137NR95_CONC23.640e-545.31Uncharacterized protein n=1 Tax=Conidiobolus coron... [more]
A0A137NRH7_CONC27.470e-549.02CsbD domain-containing protein n=1 Tax=Conidiobolu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:600234..601442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350234|estExt_Genemark1.C_Ctg_590052
Max annot lvl4751|Fungi
EggNOG OGs2E835@1|root,2SEKR@2759|Eukaryota,3AC5S@33154|Opisthokonta,3P9IK@4751|Fungi,1GXQ6@112252|Fungi incertae sedis
Evalue0.000177
Seed ortholog936053.I1BX45
Hectar predicted targeting categoryother localisation
TranscriptId350556
TrackFilteredModels1
ProteinId350234
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350234gene_11145Tribonema minus UTEX_B_3156 geneContig_59 600234..601442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350234Trimin1|350234|estExt_Genemark1.C_Ctg_590052Tribonema minus UTEX_B_3156 polypeptideContig_59 600560..601399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11145_3exon_11145_3Tribonema minus UTEX_B_3156 exonContig_59 600234..600752 -
exon_11145_2exon_11145_2Tribonema minus UTEX_B_3156 exonContig_59 601084..601166 -
exon_11145_1exon_11145_1Tribonema minus UTEX_B_3156 exonContig_59 601376..601442 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11145UTR3_11145Tribonema minus UTEX_B_3156 three_prime_UTRContig_59 600234..600559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11145CDS_11145Tribonema minus UTEX_B_3156 CDSContig_59 601376..601399 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11145UTR5_11145Tribonema minus UTEX_B_3156 five_prime_UTRContig_59 601400..601442 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11145 ID=mRNA_11145|Name=jgi.p|Trimin1|350234|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=669bp|location=Sequence derived from alignment at Contig_59:600234..601442- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACACGCAACAGAACATCAGCAAGCTACTTCTCTTCGAGAACATGTCTT
CCTCTGGACCCAGCAAGATGACCGGCACCAAGGACGAGATCCTGGGCTCC
GCCAAGGCCACCATCGGCAGCACCATCGGCAACCACCAGATGGAGGCTGA
AGGCCACACCCAGAACAAGGCGGGAACCGCAGAGAAGAACGCGGCTGCCG
CCAAGCAGAAGGTGGAGGGCGCTGGCGACAGCCTCTTTGGCCATGCACAG
AAAGCTACTGGCCAGGTGCTAGGCAATGAGCGCATGCAGGGGGAGGGGGA
GATGAACAAGGCCAAGGGGACGGCCAAGTCTGACACCGCATAAGTAGCCA
ATCAACCTTCCGGTATTGCAGCACATCTGCTCTATCTAGCGAACCTGCCA
GGAAACAGGGTTTACCCACGGGTTTAGGTTTGTGTACATGCGCATGTACA
GGAGGGCTGGCTGAGCAACGCTGCCAATCTGTTTCTGGCACAGGCATCGG
CAGCTTGACCACCTAGCAGAACTCGTGTCAACACCAAATTGCCTTTGAAC
ACGATGCATCAGCACGTGTAGCAGGTATCTTTGCATGCAACCCTGGTACA
GGCACAAAGCACAGCATGGCAAGTACAGGACGATGCGCAAATGAGAAATG
ACTCTTTCAACACACAGCA
back to top

protein sequence of jgi.p|Trimin1|350234

>Trimin1|350234|estExt_Genemark1.C_Ctg_590052 ID=Trimin1|350234|estExt_Genemark1.C_Ctg_590052|Name=jgi.p|Trimin1|350234|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNA
AAAKQKVEGAGDSLFGHAQKATGQVLGNERMQGEGEMNKAKGTAKSDTA*
back to top

mRNA from alignment at Contig_59:600234..601442-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11145 ID=mRNA_11145|Name=jgi.p|Trimin1|350234|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1209bp|location=Sequence derived from alignment at Contig_59:600234..601442- (Tribonema minus UTEX_B_3156 )
CAACACGCAACAGAACATCAGCAAGCTACTTCTCTTCGAGAACATGTCTT
CCTCTGGACCCAGCAAGGTACGCGCTTCGCATGATCGAACGGGACTTTTC
TGCCCATGGTGTCGCATCTGCCAGCCAGCAGCGCCTCGAGCGTGCGGATG
CACACGTGTAGGTCATCACCAGGTCTTCCCATGGTCAGCATCATTCGAGG
CTGCAGACATTTTCGTGCGACAACCCTCCGCGCTGAACTTCGCCAACACA
TGCTCACGTCTTGCCTCCCCTTGCAGATGACCGGCACCAAGGACGAGATC
CTGGGCTCCGCCAAGGCCACCATCGGCAGCACCATCGGCAACCACCAGAT
GGAGGCTGAGGGTGAGCATCTGCACATGGCGCGTGCATGGTGGTCTTGTG
TTTGTATCAACAGCACGCGCGTATTTTAATGGTATTGTGTTAACAGCCCC
GCGAGATTGTGCAATGATATGTACATCATCTTTCTACTCTCTTGGTCACC
TGATGTGGATGGTTTGCCTGGACCATCAAATGTCATGCTTAATTTCTTCA
TGGGCCAGTCTACACACAATTGGTCCACATGGCGTGATCATCTACACACA
GACCACACACTGCGCCCTACCACACAACTGCCTTCTCCACCATGAGCAGC
AGCATGTTGCTGACCTGTTGTCTCAACATTGTCGCAATGCAGGCCACACC
CAGAACAAGGCGGGAACCGCAGAGAAGAACGCGGCTGCCGCCAAGCAGAA
GGTGGAGGGCGCTGGCGACAGCCTCTTTGGCCATGCACAGAAAGCTACTG
GCCAGGTGCTAGGCAATGAGCGCATGCAGGGGGAGGGGGAGATGAACAAG
GCCAAGGGGACGGCCAAGTCTGACACCGCATAAGTAGCCAATCAACCTTC
CGGTATTGCAGCACATCTGCTCTATCTAGCGAACCTGCCAGGAAACAGGG
TTTACCCACGGGTTTAGGTTTGTGTACATGCGCATGTACAGGAGGGCTGG
CTGAGCAACGCTGCCAATCTGTTTCTGGCACAGGCATCGGCAGCTTGACC
ACCTAGCAGAACTCGTGTCAACACCAAATTGCCTTTGAACACGATGCATC
AGCACGTGTAGCAGGTATCTTTGCATGCAACCCTGGTACAGGCACAAAGC
ACAGCATGGCAAGTACAGGACGATGCGCAAATGAGAAATGACTCTTTCAA
CACACAGCA
back to top

Coding sequence (CDS) from alignment at Contig_59:600234..601442-

>mRNA_11145 ID=mRNA_11145|Name=jgi.p|Trimin1|350234|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_59:600234..601442- (Tribonema minus UTEX_B_3156 )
ATGTCTTCCTCTGGACCCAGCAAGATGACCGGCACCAAGGACGAGATCCT
GGGCTCCGCCAAGGCCACCATCGGCAGCACCATCGGCAACCACCAGATGG
AGGCTGAAGGCCACACCCAGAACAAGGCGGGAACCGCAGAGAAGAACGCG
GCTGCCGCCAAGCAGAAGGTGGAGGGCGCTGGCGACAGCCTCTTTGGCCA
TGCACAGAAAGCTACTGGCCAGGTGCTAGGCAATGAGCGCATGCAGGGGG
AGGGGGAGATGAACAAGGCCAAGGGGACGGCCAAGTCTGACACCGCATAA
back to top