mRNA_1113 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|346420 vs. uniprot
Match: A0A836CPQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPQ4_9STRA) HSP 1 Score: 433 bits (1113), Expect = 4.910e-151 Identity = 211/213 (99.06%), Postives = 211/213 (99.06%), Query Frame = 1 Query: 1 MISRCCVLALLFVGGAAAYSLRGLQEKEQHGRNLAPKLCLKEWKKCKADVVCNNCLENGNVPEKPQLKGASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKCEVDESAAPSMVPTTMPFMYATDAPAGATDAPTAGPTVEVTAQETLAEGPCGICGAGCGCKPGIDGCQCGPEFPGYKPPAAGGAXXGASSTSAAP 639 MISRCCVLALLFVGGAAAYSLRGLQEKEQHGRNLAPKLCLKEWKKCKADVVCNNCLENGNVPEKPQLKGASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKCEVDESAAPSMVPTTMPFMYATDAPAGATDAPTAGPTVEVTAQETLAEGPCGICGAGCGCKPGIDGCQCGPEFPGYKPPAAGGA GASSTSAAP Sbjct: 1 MISRCCVLALLFVGGAAAYSLRGLQEKEQHGRNLAPKLCLKEWKKCKADVVCNNCLENGNVPEKPQLKGASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKCEVDESAAPSMVPTTMPFMYATDAPAGATDAPTAGPTVEVTAQETLAEGPCGICGAGCGCKPGIDGCQCGPEFPGYKPPAAGGAAAGASSTSAAP 213
BLAST of jgi.p|Trimin1|346420 vs. uniprot
Match: A0A835YPP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP1_9STRA) HSP 1 Score: 222 bits (565), Expect = 2.650e-67 Identity = 110/165 (66.67%), Postives = 125/165 (75.76%), Query Frame = 1 Query: 10 RCCVLALLFVGGAAAYSLRGLQEKEQHGRNLAPKLCLKEWKKCKADVVCNNCLENGNVPEKPQLKGASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKCEVDE---SAAPSMVPTTMPFMYATDAPAGATDAPTAGPTVEVTAQETLA 495 RCC + L GAA +SLRG +++EQHGR LAPKLCLKEWK CKAD +CNNCLENGNVPEKP++ A+C TVDKWW QI F G+A CDDY+IGKSKLS LLYCRYDSY+AEAK+KCE+ S APSM MPF YATDAPA T GPTVE +A TLA Sbjct: 5 RCCAV-LALAAGAAGFSLRGAEQQEQHGRKLAPKLCLKEWKACKADAICNNCLENGNVPEKPKIDNATCATVDKWWDQIAFKGIAGCDDYDIGKSKLSKLLYCRYDSYAAEAKIKCELGSIAPSTAPSMXXXXMPFQYATDAPAA-----TVGPTVEGSAGGTLA 163
BLAST of jgi.p|Trimin1|346420 vs. uniprot
Match: A0A836CNI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI0_9STRA) HSP 1 Score: 208 bits (530), Expect = 1.050e-62 Identity = 115/215 (53.49%), Postives = 137/215 (63.72%), Query Frame = 1 Query: 7 SRCCVLALLFVGGAAAYSLRGLQEKEQHGRNLAPKLCLKEWKKCKADVVCNNCLENGNVPEKPQLKGASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKCEVDESAAPSMVPTT--------MPFMYATDAPAGA-------TDAPTAGPTVEVTAQETLAEGPCGICGAGCGCKPGIDGCQCGPEFPGYKPPAAGGA 606 +R CVLALLFV GAAA+SL G ++ QH R L P LC KEWK CKAD VCNNCL+NGNVP+KP++KGA+C+T DKWW ++DFTG+ C ++ GKS LSLLLYCR+DSY+ EA +KCEV + APS MP ++A AP T AP T T T A+GPCGICGAGCGCKPG PGYK P G A Sbjct: 2 ARYCVLALLFVSGAAAFSLHGYEK--QH-RELIPALCQKEWKHCKADAVCNNCLKNGNVPQKPKIKGATCHTFDKWWYELDFTGVPGCATFDQGKSLLSLLLYCRFDSYAEEAGVKCEV-ATFAPSAXXXXXXXXXXXXMPLLFADGAPGAEPKPPGMKTKAPAEHATPAPTVAVTNAKGPCGICGAGCGCKPGFAXXXXXXXXPGYKAPVGGAA 212
BLAST of jgi.p|Trimin1|346420 vs. uniprot
Match: A0A836CPS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS2_9STRA) HSP 1 Score: 194 bits (493), Expect = 2.530e-51 Identity = 121/253 (47.83%), Postives = 142/253 (56.13%), Query Frame = 1 Query: 13 CCVLALLFVGGAAAYSLRGLQEK---EQH-GRNLAPKLCLKEWKKCKADVVCNNCLENGNVPEKPQLKG--ASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKCEV-DESAAPSMVPT----TMPFMYATD----------APAG---ATDAP------------------------------------TAGPTVEVTAQETLAEGPCGICGAGCGCKPGIDGCQCGPEFPGYKPP 591 CC+L LF GGAAA SLRG ++ EQH R L PKLC+ EW CKA+ +CNNCLE G++PEKP LKG A+C+TVDKWWAQI + C ++ GK+ LSLLLYCRYDSY+AEAKLKC+V D SAAPS TMPF++A + P G T AP T P V A + EG CG CG GCGC G+DGCQCGPEFPGY PP Sbjct: 4 CCLL--LFAGGAAAVSLRGYEKGARVEQHIQRKLPPKLCVAEWTDCKANAICNNCLEKGDIPEKPTLKGPTATCDTVDKWWAQIALDDVPGCAKWDEGKTLLSLLLYCRYDSYAAEAKLKCDVADGSAAPSXXXXXXXXTMPFVFAPEDETPPPKLPVGPVGKPAVTAAPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGTQPPAVGTEAPAGV-EGACGFCGVGCGCVDGVDGCQCGPEFPGYVPP 253
BLAST of jgi.p|Trimin1|346420 vs. uniprot
Match: A0A836CLS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS7_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.520e-10 Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 112 LCLKEWKKCKADVVCNNCLENGNVPEKPQLKGASCNTVDKWWAQIDFTGLANCDDYEIGKSKLSLLLYCRYDSYSAEAKLKC 357 +CL++ C+AD C+ C+++G +P +P +C + KW A + F A C + G +KLS L+YCR+D+Y+ EA LKC Sbjct: 38 VCLQQTAACEADPTCSACVQSGTIPPRP-ADVTACVDLQKWLAAVSFPQPAKCK-FLFGGTKLSDLIYCRFDTYAEEAGLKC 117 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346420 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1113 ID=mRNA_1113|Name=jgi.p|Trimin1|346420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1095bp|location=Sequence derived from alignment at Contig_1:1324574..1328353+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGATCTCCAGGTGTTGCGTGTTGGCGCTGCTCTTCGTCGGCGGAGCTGCback to top protein sequence of jgi.p|Trimin1|346420 >Trimin1|346420|estExt_Genemark1.C_Ctg_10207 ID=Trimin1|346420|estExt_Genemark1.C_Ctg_10207|Name=jgi.p|Trimin1|346420|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp MISRCCVLALLFVGGAAAYSLRGLQEKEQHGRNLAPKLCLKEWKKCKADVback to top mRNA from alignment at Contig_1:1324574..1328353+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1113 ID=mRNA_1113|Name=jgi.p|Trimin1|346420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3780bp|location=Sequence derived from alignment at Contig_1:1324574..1328353+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:1324574..1328353+ >mRNA_1113 ID=mRNA_1113|Name=jgi.p|Trimin1|346420|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_1:1324574..1328353+ (Tribonema minus UTEX_B_3156 )back to top |