mRNA_11125 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|134359
Unique Name	mRNA_11125
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A835YP83_9STRA (Ccc1 family protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP83_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.350e-73
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

Query:    1 GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQVTSCS 357
            GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQVTSCS
Sbjct:    1 GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQVTSCS 119

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A835YXT4_9STRA (Ccc1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.610e-41
Identity = 80/114 (70.18%), Postives = 90/114 (78.95%), Query Frame = 1

Query:    4 HQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            H+HFSNR+ WLRAAVLGANDGLVS A LLMGV GGGA  T V+LAG +GL+ G  SMALGEYVSV SQ+DA+LADI KEK AQA GP S+  EL+EL +IYV RGL   LA QV
Sbjct:    3 HEHFSNRSPWLRAAVLGANDGLVSVATLLMGVGGGGAAKTQVLLAGIAGLVGGMCSMALGEYVSVASQKDAELADIEKEKKAQALGPASREKELEELTEIYVDRGLTKELARQV 116

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A8J4BA83_9CHLO (Uncharacterized protein n=4 Tax=Volvox TaxID=3066 RepID=A0A8J4BA83_9CHLO)

HSP 1 Score: 132 bits (333), Expect = 4.080e-36
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 1

Query:    4 HQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            HQH+S+R+ WLRA VLGANDGLVS AAL++GV GG  + + + LAG +  +AGA SMA+GEY+SV SQRD ++ADI KE+ AQ+ GP +QA ELQEL DIY++RGLD  LA +V
Sbjct:   25 HQHYSHRSPWLRAFVLGANDGLVSVAALMLGVGGGSESLSTMRLAGVASWLAGALSMAVGEYISVSSQRDTEVADIEKERQAQSKGPTAQAKELQELTDIYIKRGLDPDLARKV 138

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A0D2L8M6_9CHLO (Fe(2+)/(Mn2+) transporter pcl1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2L8M6_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 4.460e-35
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = 1

Query:    1 GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            GH HFS+RA WLRA VLGANDGLVS AAL+MGV G  A    + LAG +GL+ GA SMA GEY+SV SQ+DA+ ADI KE+A QA G R+Q  EL+EL  IY  RGL APLA QV
Sbjct:   33 GHAHFSHRAPWLRAMVLGANDGLVSVAALMMGVGGADADLRVMQLAGVAGLVGGALSMACGEYISVSSQKDAEEADIEKERAEQAKGERAQQTELEELTAIYRSRGLSAPLARQV 147

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A8J9RIV7_9CHLO (Fe(2+)/Mn(2+) transporter pcl1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIV7_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 1.060e-34
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1

Query:    1 GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            GHQHFS+RA WLRA +LGANDGLVS A+L++GVDGG     AV+LAG +GL+AGA SMA+GE+VSV SQR A+ ADI KE+  QA GPR++  EL+EL  IY  RGL   LA QV
Sbjct:   74 GHQHFSHRAPWLRAGILGANDGLVSVASLMLGVDGGTNELNAVVLAGVAGLVAGALSMAVGEFVSVSSQRVAEEADIEKERLEQAKGPRARLRELKELTAIYEDRGLSYSLARQV 188

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A2V0NRD2_9CHLO (Fe(2+) (Mn2+) transporter n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRD2_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 5.800e-34
Identity = 70/115 (60.87%), Postives = 84/115 (73.04%), Query Frame = 1

Query:    1 GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            GH H+S+RA WLRA VLGANDGLVS AALL+GV GG A   A+ LAG +GL+AGA SMA GEY+SV SQ+DA+ ADI KE+  Q  G  ++  E +EL  IY+ RGL  PLA QV
Sbjct:   25 GHAHYSHRAPWLRAMVLGANDGLVSVAALLLGVSGGDAEQRAMQLAGVAGLVAGALSMACGEYISVSSQKDAEEADIEKERQEQMKGEAARQTEFEELVGIYITRGLSEPLARQV 139

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A5J4Y6B4_9CHLO (Integral membrane n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6B4_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 8.860e-34
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1

Query:    4 HQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            HQH+S+RA WLRAAVLGANDGLVS A++++GV GG      +IL+G S L+AGA SMA GEY+SV SQRD + AD+ KE+AAQ +GP+ +  EL ELA IYV RGL   LA +V
Sbjct:   50 HQHYSDRAPWLRAAVLGANDGLVSVASIMLGVSGGSKDKHTLILSGVSALVAGAMSMAAGEYISVASQRDTEQADVDKERAAQNSGPQIRQQELDELAQIYVERGLTERLAREV 163

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A5J4XPZ6_9CHLO (Integral membrane n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XPZ6_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 2.490e-33
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 1

Query:    4 HQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            HQHFS RA WLRA VLGANDGLVS A+L++GV GG +    +ILAG +GL+ GA SMA+GEY+SV SQ+DA+ ADI KE+  QA GP ++  EL+ELA IY  RGL   LA QV
Sbjct:   49 HQHFSQRAPWLRAGVLGANDGLVSVASLMIGVGGGSSALHIMILAGLAGLVGGALSMAVGEYISVASQKDAEQADIEKERQMQAKGPAARQHELEELAAIYENRGLSKALAKQV 162

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A836BCS4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BCS4_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 9.110e-33
Identity = 71/114 (62.28%), Postives = 84/114 (73.68%), Query Frame = 1

Query:    4 HQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            H+H+++R  WLRA VLGANDGLVS AAL++GV GG     A+ LAG +  +AGA SMALGEYVSV SQRD + ADI KE+  QA GP +QA ELQEL DIY+ RGL   LA QV
Sbjct:   62 HEHYTHRNPWLRAFVLGANDGLVSVAALMLGVGGGSDDLAAMRLAGIASWVAGALSMALGEYVSVASQRDTEEADIEKERQQQAKGPAAQAHELQELTDIYISRGLTRELARQV 175

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BLAST of jgi.p|Trimin1|134359 vs. uniprot
Match: A0A8J9RF23_9CHLO (Fe(2+)/Mn(2+) transporter pcl1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RF23_9CHLO)

HSP 1 Score: 124 bits (312), Expect = 1.370e-32
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 1

Query:    4 HQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSGLMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELADIYVRRGLDAPLAMQV 345
            HQHFS RA WLRA VLGANDGLVS A+L++GV+GG      V+LAG +GL+AGA SMA+GE+VSV SQRDA+ ADI KE+  QA GP ++  EL+EL  IY  RGL   LA QV
Sbjct:   62 HQHFSQRAPWLRAGVLGANDGLVSVASLMLGVEGGTNELHPVVLAGVAGLVAGALSMAVGEFVSVSSQRDAEEADIEKERKEQAKGPAARQHELEELTAIYEDRGLSYGLARQV 175

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|134359 vs. uniprot

BLAST of jgi.p|Trimin1|134359 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YP83_9STRA	1.350e-73	100.00	Ccc1 family protein (Fragment) n=1 Tax=Tribonema m...	[more]
A0A835YXT4_9STRA	9.610e-41	70.18	Ccc1 family protein n=1 Tax=Tribonema minus TaxID=...	[more]
A0A8J4BA83_9CHLO	4.080e-36	61.40	Uncharacterized protein n=4 Tax=Volvox TaxID=3066 ...	[more]
A0A0D2L8M6_9CHLO	4.460e-35	64.35	Fe(2+)/(Mn2+) transporter pcl1 n=1 Tax=Monoraphidi...	[more]
A0A8J9RIV7_9CHLO	1.060e-34	63.48	Fe(2+)/Mn(2+) transporter pcl1 n=1 Tax=Coccomyxa s...	[more]
A0A2V0NRD2_9CHLO	5.800e-34	60.87	Fe(2+) (Mn2+) transporter n=1 Tax=Raphidocelis sub...	[more]
A0A5J4Y6B4_9CHLO	8.860e-34	60.53	Integral membrane n=1 Tax=Trebouxia sp. A1-2 TaxID...	[more]
A0A5J4XPZ6_9CHLO	2.490e-33	61.40	Integral membrane n=1 Tax=Trebouxia sp. A1-2 TaxID...	[more]
A0A836BCS4_9CHLO	9.110e-33	62.28	Uncharacterized protein n=1 Tax=Chlamydomonas schl...	[more]
A0A8J9RF23_9CHLO	1.370e-32	62.28	Fe(2+)/Mn(2+) transporter pcl1 n=1 Tax=Coccomyxa s...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_59	contig	Contig_59:406710..407343 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|134359\|gw1.59.24.1
Description	VIT family
COG category	S
Max annot lvl	3041\|Chlorophyta
EggNOG OGs	COG1814@1\|root,KOG4473@2759\|Eukaryota,37KA2@33090\|Viridiplantae,34P6T@3041\|Chlorophyta
Evalue	3.09e-33
Seed ortholog	554065.XP_005851755.1
Hectar predicted targeting category	other localisation
TranscriptId	134681
Track	FilteredModels1
ProteinId	134359

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|134359	gene_11125	Tribonema minus UTEX_B_3156	gene	Contig_59 406710..407343 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11125_1	exon_11125_1	Tribonema minus UTEX_B_3156	exon	Contig_59 406710..406835 +
exon_11125_2	exon_11125_2	Tribonema minus UTEX_B_3156	exon	Contig_59 407113..407343 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11125	CDS_11125	Tribonema minus UTEX_B_3156	CDS	Contig_59 406710..406835 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|134359	Trimin1\|134359\|gw1.59.24.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_59 406710..407343 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_59:406710..407343+
coding sequence from alignment at Contig_59:406710..407343+

spliced messenger RNA

>mRNA_11125 ID=mRNA_11125|Name=jgi.p|Trimin1|134359|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_59:406710..407343+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCCATCAACACTTCAGCAACAGAGCGCAGTGGTTGCGGGCAGCGGTGCT
TGGGGCAAATGACGGGCTAGTGTCAACCGCAGCGCTGCTCATGGGCGTCG
ACGGAGGTGGGGCCACTCATACAGCGGTGATCCTGGCAGGTACATCAGGC
CTTATGGCGGGTGCCTTCAGCATGGCTCTTGGCGAATATGTCAGCGTATG
GAGCCAGCGTGATGCACAGCTGGCTGATATAGCCAAAGAGAAAGCAGCGC
AGGCAGCAGGGCCTCGCTCGCAAGCTGCAGAGCTGCAGGAGCTGGCGGAT
ATTTACGTCAGGAGGGGGCTTGATGCACCGCTGGCCATGCAGGTGACTAG
TTGTAGT

protein sequence of jgi.p|Trimin1|134359

>Trimin1|134359|gw1.59.24.1 ID=Trimin1|134359|gw1.59.24.1|Name=jgi.p|Trimin1|134359|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
GHQHFSNRAQWLRAAVLGANDGLVSTAALLMGVDGGGATHTAVILAGTSG
LMAGAFSMALGEYVSVWSQRDAQLADIAKEKAAQAAGPRSQAAELQELAD
IYVRRGLDAPLAMQVTSCS

mRNA from alignment at Contig_59:406710..407343+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11125 ID=mRNA_11125|Name=jgi.p|Trimin1|134359|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=634bp|location=Sequence derived from alignment at Contig_59:406710..407343+ (Tribonema minus UTEX_B_3156 )
GGCCATCAACACTTCAGCAACAGAGCGCAGTGGTTGCGGGCAGCGGTGCT
TGGGGCAAATGACGGGCTAGTGTCAACCGCAGCGCTGCTCATGGGCGTCG
ACGGAGGTGGGGCCACTCATACAGCGGTGAGATGATATATGGAACCTGAA
GAAGACGCAGCAACAGAGGCCAGCGTCCAGCTGATCCGTGAAAGATATGC
TGCCGATGTCAAGTTCTAGGCTGCGGCACGTGTGGGCGCTTGCATCTGGG
ACGCAGCAGCATGCTGAGACTGTGATGTTCGTGACGCACTCTGCATGTGC
ATAAGAGAGCAAAGCCAAGTCCTTACTGCGTCCGCGCTTCACACTCGCAT
CAGATTTCGGAGTTTCGGAGATAAAATTTGATGACCACTGTCGGCTCGCG
CAGGTGATCCTGGCAGGTACATCAGGCCTTATGGCGGGTGCCTTCAGCAT
GGCTCTTGGCGAATATGTCAGCGTATGGAGCCAGCGTGATGCACAGCTGG
CTGATATAGCCAAAGAGAAAGCAGCGCAGGCAGCAGGGCCTCGCTCGCAA
GCTGCAGAGCTGCAGGAGCTGGCGGATATTTACGTCAGGAGGGGGCTTGA
TGCACCGCTGGCCATGCAGGTGACTAGTTGTAGT

Coding sequence (CDS) from alignment at Contig_59:406710..407343+

>mRNA_11125 ID=mRNA_11125|Name=jgi.p|Trimin1|134359|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_59:406710..407343+ (Tribonema minus UTEX_B_3156 )
GGCCATCAACACTTCAGCAACAGAGCGCAGTGGTTGCGGGCAGCGGTGCT
TGGGGCAAATGACGGGCTAGTGTCAACCGCAGCGCTGCTCATGGGCGTCG
ACGGAGGTGGGGCCACTCATACAGCGGTGATCCTGGCAGGTACATCAGGC
CTTATGGCGGGTGCCTTCAGCATGGCTCTTGGCGAATATGTCAGCGTATG
GAGCCAGCGTGATGCACAGCTGGCTGATATAGCCAAAGAGAAAGCAGCGC
AGGCAGCAGGGCCTCGCTCGCAAGCTGCAGAGCTGCAGGAGCTGGCGGAT
ATTTACGTCAGGAGGGGGCTTGATGCACCGCTGGCCATGCAGGTGACTAG
TTGTAGT