mRNA_1111 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|156512
Unique Name	mRNA_1111
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|156512 vs. uniprot
Match: A0A835ZJ02_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ02_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.870e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query:    1 MNARLILAAGSRDGDGVRALLVQEAAVTASDGEGRTALMSAAIDGHIDCVRALLAHNAAVQV 186
            MNARLILAAGSRDGDGVRALLVQEAAVTASDGEGRTALMSAAIDGHIDCVRALLAHNAAVQV
Sbjct:    1 MNARLILAAGSRDGDGVRALLVQEAAVTASDGEGRTALMSAAIDGHIDCVRALLAHNAAVQV 62

[Close]

BLAST of jgi.p|Trimin1|156512 vs. uniprot
Match: A0A835YI19_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI19_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.480e-18
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1

Query: 1717 MRAGADIGLPAEYTVVRHMITDMCEFIDIPDRLNEIVVAFAQRALQLRAPGPP 1875
            MRAGADIGLPAEYTVVR MITDMCEFIDIP+R+NEIVVAFAQRALQ RA GPP
Sbjct:  398 MRAGADIGLPAEYTVVRDMITDMCEFIDIPERVNEIVVAFAQRALQARASGPP 450

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|156512 vs. uniprot

BLAST of jgi.p|Trimin1|156512 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZJ02_9STRA	2.870e-23	100.00	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]
A0A835YI19_9STRA	2.480e-18	90.57	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:1267869..1269746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|156512\|e_gw1.1.387.1
Hectar predicted targeting category	other localisation
TranscriptId	156834
Track	FilteredModels1
ProteinId	156512

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156512	gene_1111	Tribonema minus UTEX_B_3156	gene	Contig_1 1267869..1269746 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1111_1	exon_1111_1	Tribonema minus UTEX_B_3156	exon	Contig_1 1267869..1269746 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1111	CDS_1111	Tribonema minus UTEX_B_3156	CDS	Contig_1 1267869..1269746 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156512	Trimin1\|156512\|e_gw1.1.387.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 1267869..1269746 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:1267869..1269746+
coding sequence from alignment at Contig_1:1267869..1269746+

spliced messenger RNA

>mRNA_1111 ID=mRNA_1111|Name=jgi.p|Trimin1|156512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1878bp|location=Sequence derived from alignment at Contig_1:1267869..1269746+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCCGCCTCATCCTGGCTGCGGGCTCCAGAGATGGTGATGGCGT
ACGGGCGCTGCTGGTGCAAGAGGCGGCGGTGACGGCATCTGACGGGGAGG
GGAGGACTGCGCTCATGTCGGCGGCAATCGATGGCCACATCGACTGCGTC
AGGGCGCTGCTGGCGCACAATGCGGCGGTGCAGGTAACGGCAGTTGACGG
GGAGGGGACCACTGCGCTCATGTGGGCAGCAACGTACGGCCACCTCGACT
GTGTCACGGCGCTGCTAGCGCACAATGCGGCGGTGCGGGTGACGGCAGTT
GACGAGGAGGGGGAAACTGCGCTCATGTCCGCGGCAATCGATGGCCACAT
CGATTGCGTCAGGGCGCTGCTGGCGCACAATGCGGTGGTGCAGGTGACGG
TAGTTGGCGGGGAGGGGGAAACTGCGCTCATGTCCGCGGCAATCAATGGC
CACATCGACTGCGTCAGGGCGCTGCTGGCGCACAATGCGGAGGTGCAGGT
GACGGCAGTTGACGGGGAGGGGGAAACTGCGCTCTTGAAGGCAGCAATGA
ATGGCCACGTAGACTGTGTCACGGCGCTGCTGGCGCACGACGCAGAGGTG
CAGGTGACGGCAGTTGACGGGGAGGGGAGAACAGCGCTCATTTGGGCAGC
AAAAACCGGCTACGTCGACTGCGTCAGGGCGCTGCTGGCGCATGATGCGG
CGGTGACAGCAATTGACGGGAAGGGGAGAACGGCGCTTATGGTGGCGGCA
ATGAAAGGCCACGTTGGCTGCGTCGAGGCGCTGCTGGGGCACGATGCGGC
AGTGACGGCGGTTGACGTGGAGGGGAAAACGGCGCTCATGAAGGCAGCAA
CGAATGGCCACGTAGACTGTGTCACGGCGCTGCTGGTGCACAACGCGGAG
GTGCAGGTGACGGCAGCTGACATGGAGGGGAGAACGGCGGTCATGAAGGC
AGCAATGACAGGCCATATCGATTGTGTCACGGCGCTGCTGGTGCACAACG
CGGAGGTGCAGGTGACGGCGGTTGACGGGGAGAGGAAAACGGCGCTCATG
TGGGCAGCAAACGCCGGCTACGTCGACTGCGTCAGGGCACTGCTTGCGCA
TGACGCAGAGGTGCAGGTGACGGCAGTTGTCGGGAAGGGGAGAACGGCGC
TCATGCGAGCAGCAATGAACGGCCATGCAGACACTGTCACGGCGCTGCTG
GCGCACGACGCGGAGATGCAGGTGACGGCAGCTGACATGGAGGGGAGAAC
GGCGCTCATGAAGGCAGCAATGCAAGGCCATATTGACTGCGTCACAAGGC
TGCTGGTGCACGACGCGGAGCTGCAGGTGACGGCAGTTGACGGGGAGGGG
AAAACGGCACTCACATGGGCAGCAAGCACCGGCCGTGCTGACTGCGTTAC
GGCGCTGCTGGCGCACGACGCGGCGGTGACGGCAGTCGACAGGAAGGGGA
GAACGGCGCTCATGCGAGCAGCGATGAACGGCCATGTAGACAGTGTCACA
GCGCTGCTGGCGCACGATGCGGAGGTGCAGGTGACGGCAGTTGACGGGAG
GCGGAGAACGGCGCTCATGTGGGCAGCAAGGAACGGCCACGTCGGCTGCG
TCGCGGCGCTGCTTCAGCACAGGGCGGCGAAACAGGTCGCAGCAGTAGAC
AGGCAGGGGAGCACGGCCTTCCGCCTGGCAGTGCTCGGATCACACAAGAG
TGTTATCGCAAAGCTGATGAGGGCAGGTGCCGATATAGGGCTGCCGGCCG
AATACACGGTCGTCCGCCACATGATCACCGACATGTGTGAGTTTATCGAC
ATACCTGATCGTTTGAATGAGATCGTGGTCGCGTTCGCACAGAGGGCGTT
GCAGCTACGCGCCCCAGGCCCCCCATAG

protein sequence of jgi.p|Trimin1|156512

>Trimin1|156512|e_gw1.1.387.1 ID=Trimin1|156512|e_gw1.1.387.1|Name=jgi.p|Trimin1|156512|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=626bp
MNARLILAAGSRDGDGVRALLVQEAAVTASDGEGRTALMSAAIDGHIDCV
RALLAHNAAVQVTAVDGEGTTALMWAATYGHLDCVTALLAHNAAVRVTAV
DEEGETALMSAAIDGHIDCVRALLAHNAVVQVTVVGGEGETALMSAAING
HIDCVRALLAHNAEVQVTAVDGEGETALLKAAMNGHVDCVTALLAHDAEV
QVTAVDGEGRTALIWAAKTGYVDCVRALLAHDAAVTAIDGKGRTALMVAA
MKGHVGCVEALLGHDAAVTAVDVEGKTALMKAATNGHVDCVTALLVHNAE
VQVTAADMEGRTAVMKAAMTGHIDCVTALLVHNAEVQVTAVDGERKTALM
WAANAGYVDCVRALLAHDAEVQVTAVVGKGRTALMRAAMNGHADTVTALL
AHDAEMQVTAADMEGRTALMKAAMQGHIDCVTRLLVHDAELQVTAVDGEG
KTALTWAASTGRADCVTALLAHDAAVTAVDRKGRTALMRAAMNGHVDSVT
ALLAHDAEVQVTAVDGRRRTALMWAARNGHVGCVAALLQHRAAKQVAAVD
RQGSTAFRLAVLGSHKSVIAKLMRAGADIGLPAEYTVVRHMITDMCEFID
IPDRLNEIVVAFAQRALQLRAPGPP*

mRNA from alignment at Contig_1:1267869..1269746+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1111 ID=mRNA_1111|Name=jgi.p|Trimin1|156512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1878bp|location=Sequence derived from alignment at Contig_1:1267869..1269746+ (Tribonema minus UTEX_B_3156 )
ATGAATGCCCGCCTCATCCTGGCTGCGGGCTCCAGAGATGGTGATGGCGT
ACGGGCGCTGCTGGTGCAAGAGGCGGCGGTGACGGCATCTGACGGGGAGG
GGAGGACTGCGCTCATGTCGGCGGCAATCGATGGCCACATCGACTGCGTC
AGGGCGCTGCTGGCGCACAATGCGGCGGTGCAGGTAACGGCAGTTGACGG
GGAGGGGACCACTGCGCTCATGTGGGCAGCAACGTACGGCCACCTCGACT
GTGTCACGGCGCTGCTAGCGCACAATGCGGCGGTGCGGGTGACGGCAGTT
GACGAGGAGGGGGAAACTGCGCTCATGTCCGCGGCAATCGATGGCCACAT
CGATTGCGTCAGGGCGCTGCTGGCGCACAATGCGGTGGTGCAGGTGACGG
TAGTTGGCGGGGAGGGGGAAACTGCGCTCATGTCCGCGGCAATCAATGGC
CACATCGACTGCGTCAGGGCGCTGCTGGCGCACAATGCGGAGGTGCAGGT
GACGGCAGTTGACGGGGAGGGGGAAACTGCGCTCTTGAAGGCAGCAATGA
ATGGCCACGTAGACTGTGTCACGGCGCTGCTGGCGCACGACGCAGAGGTG
CAGGTGACGGCAGTTGACGGGGAGGGGAGAACAGCGCTCATTTGGGCAGC
AAAAACCGGCTACGTCGACTGCGTCAGGGCGCTGCTGGCGCATGATGCGG
CGGTGACAGCAATTGACGGGAAGGGGAGAACGGCGCTTATGGTGGCGGCA
ATGAAAGGCCACGTTGGCTGCGTCGAGGCGCTGCTGGGGCACGATGCGGC
AGTGACGGCGGTTGACGTGGAGGGGAAAACGGCGCTCATGAAGGCAGCAA
CGAATGGCCACGTAGACTGTGTCACGGCGCTGCTGGTGCACAACGCGGAG
GTGCAGGTGACGGCAGCTGACATGGAGGGGAGAACGGCGGTCATGAAGGC
AGCAATGACAGGCCATATCGATTGTGTCACGGCGCTGCTGGTGCACAACG
CGGAGGTGCAGGTGACGGCGGTTGACGGGGAGAGGAAAACGGCGCTCATG
TGGGCAGCAAACGCCGGCTACGTCGACTGCGTCAGGGCACTGCTTGCGCA
TGACGCAGAGGTGCAGGTGACGGCAGTTGTCGGGAAGGGGAGAACGGCGC
TCATGCGAGCAGCAATGAACGGCCATGCAGACACTGTCACGGCGCTGCTG
GCGCACGACGCGGAGATGCAGGTGACGGCAGCTGACATGGAGGGGAGAAC
GGCGCTCATGAAGGCAGCAATGCAAGGCCATATTGACTGCGTCACAAGGC
TGCTGGTGCACGACGCGGAGCTGCAGGTGACGGCAGTTGACGGGGAGGGG
AAAACGGCACTCACATGGGCAGCAAGCACCGGCCGTGCTGACTGCGTTAC
GGCGCTGCTGGCGCACGACGCGGCGGTGACGGCAGTCGACAGGAAGGGGA
GAACGGCGCTCATGCGAGCAGCGATGAACGGCCATGTAGACAGTGTCACA
GCGCTGCTGGCGCACGATGCGGAGGTGCAGGTGACGGCAGTTGACGGGAG
GCGGAGAACGGCGCTCATGTGGGCAGCAAGGAACGGCCACGTCGGCTGCG
TCGCGGCGCTGCTTCAGCACAGGGCGGCGAAACAGGTCGCAGCAGTAGAC
AGGCAGGGGAGCACGGCCTTCCGCCTGGCAGTGCTCGGATCACACAAGAG
TGTTATCGCAAAGCTGATGAGGGCAGGTGCCGATATAGGGCTGCCGGCCG
AATACACGGTCGTCCGCCACATGATCACCGACATGTGTGAGTTTATCGAC
ATACCTGATCGTTTGAATGAGATCGTGGTCGCGTTCGCACAGAGGGCGTT
GCAGCTACGCGCCCCAGGCCCCCCATAG

Coding sequence (CDS) from alignment at Contig_1:1267869..1269746+

>mRNA_1111 ID=mRNA_1111|Name=jgi.p|Trimin1|156512|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1878bp|location=Sequence derived from alignment at Contig_1:1267869..1269746+ (Tribonema minus UTEX_B_3156 )
ATGAATGCCCGCCTCATCCTGGCTGCGGGCTCCAGAGATGGTGATGGCGT
ACGGGCGCTGCTGGTGCAAGAGGCGGCGGTGACGGCATCTGACGGGGAGG
GGAGGACTGCGCTCATGTCGGCGGCAATCGATGGCCACATCGACTGCGTC
AGGGCGCTGCTGGCGCACAATGCGGCGGTGCAGGTAACGGCAGTTGACGG
GGAGGGGACCACTGCGCTCATGTGGGCAGCAACGTACGGCCACCTCGACT
GTGTCACGGCGCTGCTAGCGCACAATGCGGCGGTGCGGGTGACGGCAGTT
GACGAGGAGGGGGAAACTGCGCTCATGTCCGCGGCAATCGATGGCCACAT
CGATTGCGTCAGGGCGCTGCTGGCGCACAATGCGGTGGTGCAGGTGACGG
TAGTTGGCGGGGAGGGGGAAACTGCGCTCATGTCCGCGGCAATCAATGGC
CACATCGACTGCGTCAGGGCGCTGCTGGCGCACAATGCGGAGGTGCAGGT
GACGGCAGTTGACGGGGAGGGGGAAACTGCGCTCTTGAAGGCAGCAATGA
ATGGCCACGTAGACTGTGTCACGGCGCTGCTGGCGCACGACGCAGAGGTG
CAGGTGACGGCAGTTGACGGGGAGGGGAGAACAGCGCTCATTTGGGCAGC
AAAAACCGGCTACGTCGACTGCGTCAGGGCGCTGCTGGCGCATGATGCGG
CGGTGACAGCAATTGACGGGAAGGGGAGAACGGCGCTTATGGTGGCGGCA
ATGAAAGGCCACGTTGGCTGCGTCGAGGCGCTGCTGGGGCACGATGCGGC
AGTGACGGCGGTTGACGTGGAGGGGAAAACGGCGCTCATGAAGGCAGCAA
CGAATGGCCACGTAGACTGTGTCACGGCGCTGCTGGTGCACAACGCGGAG
GTGCAGGTGACGGCAGCTGACATGGAGGGGAGAACGGCGGTCATGAAGGC
AGCAATGACAGGCCATATCGATTGTGTCACGGCGCTGCTGGTGCACAACG
CGGAGGTGCAGGTGACGGCGGTTGACGGGGAGAGGAAAACGGCGCTCATG
TGGGCAGCAAACGCCGGCTACGTCGACTGCGTCAGGGCACTGCTTGCGCA
TGACGCAGAGGTGCAGGTGACGGCAGTTGTCGGGAAGGGGAGAACGGCGC
TCATGCGAGCAGCAATGAACGGCCATGCAGACACTGTCACGGCGCTGCTG
GCGCACGACGCGGAGATGCAGGTGACGGCAGCTGACATGGAGGGGAGAAC
GGCGCTCATGAAGGCAGCAATGCAAGGCCATATTGACTGCGTCACAAGGC
TGCTGGTGCACGACGCGGAGCTGCAGGTGACGGCAGTTGACGGGGAGGGG
AAAACGGCACTCACATGGGCAGCAAGCACCGGCCGTGCTGACTGCGTTAC
GGCGCTGCTGGCGCACGACGCGGCGGTGACGGCAGTCGACAGGAAGGGGA
GAACGGCGCTCATGCGAGCAGCGATGAACGGCCATGTAGACAGTGTCACA
GCGCTGCTGGCGCACGATGCGGAGGTGCAGGTGACGGCAGTTGACGGGAG
GCGGAGAACGGCGCTCATGTGGGCAGCAAGGAACGGCCACGTCGGCTGCG
TCGCGGCGCTGCTTCAGCACAGGGCGGCGAAACAGGTCGCAGCAGTAGAC
AGGCAGGGGAGCACGGCCTTCCGCCTGGCAGTGCTCGGATCACACAAGAG
TGTTATCGCAAAGCTGATGAGGGCAGGTGCCGATATAGGGCTGCCGGCCG
AATACACGGTCGTCCGCCACATGATCACCGACATGTGTGAGTTTATCGAC
ATACCTGATCGTTTGAATGAGATCGTGGTCGCGTTCGCACAGAGGGCGTT
GCAGCTACGCGCCCCAGGCCCCCCATAG