mRNA_11106 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: A0A836CAV6_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV6_9STRA) HSP 1 Score: 272 bits (695), Expect = 1.960e-92 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query: 1 MQRQHQQHAQLLHPCYSFAADDDDVVDFSGAATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
MQRQHQQHAQLLHPCYSFAADDDDVVDFSGAATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS
Sbjct: 1 MQRQHQQHAQLLHPCYSFAADDDDVVDFSGAATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 135
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: UPI001682BFA1 (Grx4 family monothiol glutaredoxin n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001682BFA1) HSP 1 Score: 158 bits (400), Expect = 7.330e-48 Identity = 72/103 (69.90%), Postives = 88/103 (85.44%), Query Frame = 1
Query: 97 TQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
TQERI LV DN I+VFMKGN++ PQCG+S VVQILN LGVP+ET DV+AD IR+G+K+FSNWPTIPQ+Y+NGEFVGG+DI+IELYQ G+L E +E+A AS
Sbjct: 5 TQERIQKLVQDNKIMVFMKGNKLMPQCGFSNNVVQILNVLGVPFETCDVLADQEIRQGIKEFSNWPTIPQVYVNGEFVGGSDILIELYQNGQLREMVEVALAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: A0A7C3ZZR4_9CYAN (Glutaredoxin n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A7C3ZZR4_9CYAN) HSP 1 Score: 157 bits (398), Expect = 1.480e-47 Identity = 71/102 (69.61%), Postives = 89/102 (87.25%), Query Frame = 1
Query: 100 QERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
+ER+ LV +N I++FMKGN++ PQCG+S VVQILN LGVPYETVDV+AD IR+G+K++SNWPTIPQLY+NGEF+GG+DI IELYQ+GEL E+IEIA AS
Sbjct: 6 KERLDQLVKENKIMLFMKGNKLMPQCGFSNNVVQILNSLGVPYETVDVLADGEIRQGIKEYSNWPTIPQLYINGEFIGGSDIAIELYQSGELAEKIEIALAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: D8LG05_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG05_ECTSI) HSP 1 Score: 157 bits (396), Expect = 4.900e-47 Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 1
Query: 82 FSGAATQERIAA----LVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
F A QER A +V+ + IL F+KGNR+ PQCGYSGT+V IL L VP+ETVDV+AD+RIR+G+KDFSNWPTIPQLYL GEF+GGADIVIEL+Q+GEL E IE+AAAS
Sbjct: 12 FGARAMQERTHAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIRQGIKDFSNWPTIPQLYLGGEFIGGADIVIELFQSGELQEMIEVAAAS 123
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: A0A2T2VXY6_9CYAN (Glutaredoxin n=16 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2T2VXY6_9CYAN) HSP 1 Score: 155 bits (392), Expect = 1.210e-46 Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = 1
Query: 91 AATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
+AT+ER+ L+ +N I+VFMKGN++ PQCG+S VVQILN LGVP+ETVDV+AD IR+G+K++SNWPTIPQ+Y+NGEFVGG+DI+IELYQ G+L E +EIA AS
Sbjct: 3 SATKERLDQLIQNNTIMVFMKGNKLMPQCGFSNNVVQILNVLGVPFETVDVLADPDIRQGIKEYSNWPTIPQVYINGEFVGGSDILIELYQNGKLQEMVEIAMAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: D8FTI6_9CYAN (Glutaredoxin n=2 Tax=Oscillatoriales TaxID=1150 RepID=D8FTI6_9CYAN) HSP 1 Score: 155 bits (391), Expect = 1.720e-46 Identity = 70/104 (67.31%), Postives = 88/104 (84.62%), Query Frame = 1
Query: 94 ATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
A ++I +LV N +LVFMKGN++ PQCG+S VVQILN LGVP+ETVDV+AD IR+GVK++SNWPTIPQ+Y+NGEFVGG+DI+IELYQ GEL E +E+A AS
Sbjct: 4 AAHDKIESLVKQNKVLVFMKGNKLMPQCGFSNNVVQILNTLGVPFETVDVLADPEIRQGVKEYSNWPTIPQVYINGEFVGGSDIMIELYQKGELQEMVEVALAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: A0A1E5QGL9_9CYAN (Glutaredoxin n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QGL9_9CYAN) HSP 1 Score: 155 bits (391), Expect = 1.720e-46 Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 1
Query: 100 QERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
QE+I +LV N ILVFMKGN++ PQCG+S VVQILN LGVP+ETVDV+AD IR+G+K++SNWPTIPQ+Y+NGEFVGG+DI+IELYQ GEL E +E+A AS
Sbjct: 6 QEKIDSLVNQNKILVFMKGNKLMPQCGFSNNVVQILNALGVPFETVDVLADPDIRQGIKEYSNWPTIPQVYINGEFVGGSDIMIELYQKGELQEMVEVALAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: K8GGZ7_9CYAN (Glutaredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=K8GGZ7_9CYAN) HSP 1 Score: 154 bits (390), Expect = 2.440e-46 Identity = 69/103 (66.99%), Postives = 87/103 (84.47%), Query Frame = 1
Query: 97 TQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
TQ RI L+ N I+VFMKGN++ PQCG+S VVQILN LGVPYETVDV+AD IR+G+K++SNWPTIPQ+Y+NGEF+GG+DI+IELYQ GEL + +E+A AS
Sbjct: 5 TQARIDELIQSNKIMVFMKGNKLMPQCGFSNNVVQILNVLGVPYETVDVLADPEIRQGIKEYSNWPTIPQVYINGEFIGGSDIMIELYQKGELQQMVEVALAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: A0A3B8JI96_9CYAN (Glutaredoxin n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A3B8JI96_9CYAN) HSP 1 Score: 153 bits (387), Expect = 6.990e-46 Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 1
Query: 100 QERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
+ERI LV N ILVFMKGN++ PQCG+S VVQILN LGVPYETVDV+AD IR+G+KD+S+WPTIPQ+Y+NGEFVGG+D++IELYQ GEL + +E+A AS
Sbjct: 6 KERIDNLVKQNKILVFMKGNKLMPQCGFSNNVVQILNTLGVPYETVDVLADPEIRQGIKDYSSWPTIPQVYINGEFVGGSDVMIELYQQGELQQLVEVALAS 107
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Match: K9XYP7_STAC7 (Glutaredoxin n=2 Tax=Stanieria TaxID=102115 RepID=K9XYP7_STAC7) HSP 1 Score: 153 bits (386), Expect = 9.920e-46 Identity = 69/104 (66.35%), Postives = 90/104 (86.54%), Query Frame = 1
Query: 94 ATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIREGVKDFSNWPTIPQLYLNGEFVGGADIVIELYQTGELLEQIEIAAAS 405
A ++RI L+ +N ILVFMKG+++ PQCG+S VVQILN LGVPYETVDV+AD IR+G+K++SNWPTIPQ+Y+NGEFVGG+DI+IELYQ+GEL + +E+A AS
Sbjct: 4 AVKDRIDQLINNNKILVFMKGSKLMPQCGFSNNVVQILNTLGVPYETVDVLADLEIRQGIKEYSNWPTIPQVYINGEFVGGSDIMIELYQSGELQQMVEVALAS 107 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168655 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11106 ID=mRNA_11106|Name=jgi.p|Trimin1|168655|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_59:182489..184215- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAACGGCAGCACCAGCAGCATGCCCAGCTGCTGCACCCGTGCTACTCback to top protein sequence of jgi.p|Trimin1|168655 >Trimin1|168655|e_gw1.59.52.1 ID=Trimin1|168655|e_gw1.59.52.1|Name=jgi.p|Trimin1|168655|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp MQRQHQQHAQLLHPCYSFAADDDDVVDFSGAATQERIAALVADNPILVFMback to top mRNA from alignment at Contig_59:182489..184215- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11106 ID=mRNA_11106|Name=jgi.p|Trimin1|168655|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1727bp|location=Sequence derived from alignment at Contig_59:182489..184215- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_59:182489..184215- >mRNA_11106 ID=mRNA_11106|Name=jgi.p|Trimin1|168655|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_59:182489..184215- (Tribonema minus UTEX_B_3156 )back to top |