mRNA_11105 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168671
Unique NamemRNA_11105
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168671 vs. uniprot
Match: A0A836CC32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC32_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-10
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:  700 PRLKRVTTLGCLGQYGKCGPHMQQRKTCL 786
            PRLKRVTTLGCLGQYGKCGPHMQQRKTCL
Sbjct:  234 PRLKRVTTLGCLGQYGKCGPHMQQRKTCL 262
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168671 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CC32_9STRA3.040e-10100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:179562..180350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168671|e_gw1.59.50.1
Hectar predicted targeting categoryother localisation
TranscriptId168993
TrackFilteredModels1
ProteinId168671
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168671gene_11105Tribonema minus UTEX_B_3156 geneContig_59 179562..180350 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11105_1exon_11105_1Tribonema minus UTEX_B_3156 exonContig_59 179562..180350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11105CDS_11105Tribonema minus UTEX_B_3156 CDSContig_59 179562..180350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168671Trimin1|168671|e_gw1.59.50.1Tribonema minus UTEX_B_3156 polypeptideContig_59 179562..180350 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11105 ID=mRNA_11105|Name=jgi.p|Trimin1|168671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_59:179562..180350- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCATTGCGTCAGTTTGACCAGCCTGCCGGAGAGTCTCAACGACTT
GCCGGCACTGACAACACTCAACCTCGAGTCCTGCACACGTCTTACCTGCC
TACCCAACCACAACGGCAACCTGCGCGCGCTCACCAACCTCAACCTGCGG
CATTGCGCCGCACTGACACGGTTGCCAGACAGCATTGGCAGCTTGACGGC
TCTGCCCACTCTACAGCTAAGCTTCTGCAAGGCGTTGGAAGCTCTGCCGG
ACCGCATCGCCGACATGCGCGCAGTCACCAACATCAAACTGCGGGCGTGT
ACAGCTTTGACAGCAGTGCCGGAGGCCATAGGTGCACTAACTGCGCTGAC
AGCGCTCAACCTGCAGACGTGCATGCTGCTCACCAGACTGCCCGACGCGA
TTGGCCAATTAGCAGCGCTGAGGACCCTGGACGTAAGCAACTGCCGGCGC
CTCGCATGTTTGCCGGACAGCATCGGTGGGCTGGTGTCGCTGACCATGCT
CAACCTCGACTTCTGCCGGGCGCTCACGTGCTTGCCTGACGCCATTGGCA
GTCTTGCGGCGCTAACAACTCTCAACTTGGGGAACTGCAGCCAGCTCAGG
AGCTTGCCGTCCACGGTCGATGGCTTGACCGCATTGACTGCGCTCAACTT
GCATAACTGCAAGGCGCTCTCAGGTCTGCCGCGTGCGCTTGGCGAGTTGC
CCCGGCTGAAGCGCGTCACTACACTCGGATGCCTGGGGCAGTACGGAAAA
TGTGGCCCTCACATGCAGCAGCGCAAAACCTGCTTGTAG
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protein sequence of jgi.p|Trimin1|168671

>Trimin1|168671|e_gw1.59.50.1 ID=Trimin1|168671|e_gw1.59.50.1|Name=jgi.p|Trimin1|168671|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp
MRHCVSLTSLPESLNDLPALTTLNLESCTRLTCLPNHNGNLRALTNLNLR
HCAALTRLPDSIGSLTALPTLQLSFCKALEALPDRIADMRAVTNIKLRAC
TALTAVPEAIGALTALTALNLQTCMLLTRLPDAIGQLAALRTLDVSNCRR
LACLPDSIGGLVSLTMLNLDFCRALTCLPDAIGSLAALTTLNLGNCSQLR
SLPSTVDGLTALTALNLHNCKALSGLPRALGELPRLKRVTTLGCLGQYGK
CGPHMQQRKTCL*
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mRNA from alignment at Contig_59:179562..180350-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11105 ID=mRNA_11105|Name=jgi.p|Trimin1|168671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_59:179562..180350- (Tribonema minus UTEX_B_3156 )
ATGCGGCATTGCGTCAGTTTGACCAGCCTGCCGGAGAGTCTCAACGACTT
GCCGGCACTGACAACACTCAACCTCGAGTCCTGCACACGTCTTACCTGCC
TACCCAACCACAACGGCAACCTGCGCGCGCTCACCAACCTCAACCTGCGG
CATTGCGCCGCACTGACACGGTTGCCAGACAGCATTGGCAGCTTGACGGC
TCTGCCCACTCTACAGCTAAGCTTCTGCAAGGCGTTGGAAGCTCTGCCGG
ACCGCATCGCCGACATGCGCGCAGTCACCAACATCAAACTGCGGGCGTGT
ACAGCTTTGACAGCAGTGCCGGAGGCCATAGGTGCACTAACTGCGCTGAC
AGCGCTCAACCTGCAGACGTGCATGCTGCTCACCAGACTGCCCGACGCGA
TTGGCCAATTAGCAGCGCTGAGGACCCTGGACGTAAGCAACTGCCGGCGC
CTCGCATGTTTGCCGGACAGCATCGGTGGGCTGGTGTCGCTGACCATGCT
CAACCTCGACTTCTGCCGGGCGCTCACGTGCTTGCCTGACGCCATTGGCA
GTCTTGCGGCGCTAACAACTCTCAACTTGGGGAACTGCAGCCAGCTCAGG
AGCTTGCCGTCCACGGTCGATGGCTTGACCGCATTGACTGCGCTCAACTT
GCATAACTGCAAGGCGCTCTCAGGTCTGCCGCGTGCGCTTGGCGAGTTGC
CCCGGCTGAAGCGCGTCACTACACTCGGATGCCTGGGGCAGTACGGAAAA
TGTGGCCCTCACATGCAGCAGCGCAAAACCTGCTTGTAG
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Coding sequence (CDS) from alignment at Contig_59:179562..180350-

>mRNA_11105 ID=mRNA_11105|Name=jgi.p|Trimin1|168671|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_59:179562..180350- (Tribonema minus UTEX_B_3156 )
ATGCGGCATTGCGTCAGTTTGACCAGCCTGCCGGAGAGTCTCAACGACTT
GCCGGCACTGACAACACTCAACCTCGAGTCCTGCACACGTCTTACCTGCC
TACCCAACCACAACGGCAACCTGCGCGCGCTCACCAACCTCAACCTGCGG
CATTGCGCCGCACTGACACGGTTGCCAGACAGCATTGGCAGCTTGACGGC
TCTGCCCACTCTACAGCTAAGCTTCTGCAAGGCGTTGGAAGCTCTGCCGG
ACCGCATCGCCGACATGCGCGCAGTCACCAACATCAAACTGCGGGCGTGT
ACAGCTTTGACAGCAGTGCCGGAGGCCATAGGTGCACTAACTGCGCTGAC
AGCGCTCAACCTGCAGACGTGCATGCTGCTCACCAGACTGCCCGACGCGA
TTGGCCAATTAGCAGCGCTGAGGACCCTGGACGTAAGCAACTGCCGGCGC
CTCGCATGTTTGCCGGACAGCATCGGTGGGCTGGTGTCGCTGACCATGCT
CAACCTCGACTTCTGCCGGGCGCTCACGTGCTTGCCTGACGCCATTGGCA
GTCTTGCGGCGCTAACAACTCTCAACTTGGGGAACTGCAGCCAGCTCAGG
AGCTTGCCGTCCACGGTCGATGGCTTGACCGCATTGACTGCGCTCAACTT
GCATAACTGCAAGGCGCTCTCAGGTCTGCCGCGTGCGCTTGGCGAGTTGC
CCCGGCTGAAGCGCGTCACTACACTCGGATGCCTGGGGCAGTACGGAAAA
TGTGGCCCTCACATGCAGCAGCGCAAAACCTGCTTGTAG
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