mRNA_11088 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168621
Unique NamemRNA_11088
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168621 vs. uniprot
Match: A0A836CA30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA30_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.220e-42
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 CHQLTVLPDSINGLAALKEMNLHNMPGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFARLSTLQLSVDEHPKLTGVPDAITQMSGFSSSPSLHGCLDGFDAH 384
            CHQLTVLPDSINGLAALKEMNLHNMPGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFARLSTLQLSVDEHPKLTGVPDAITQMSGFSSSPSLHGCLDGFDAH
Sbjct:    1 CHQLTVLPDSINGLAALKEMNLHNMPGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSFARLSTLQLSVDEHPKLTGVPDAITQMSGFSSSPSLHGCLDGFDAH 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168621 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CA30_9STRA9.220e-42100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:7674..8060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168621|e_gw1.59.48.1
Hectar predicted targeting categoryother localisation
TranscriptId168943
TrackFilteredModels1
ProteinId168621
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168621gene_11088Tribonema minus UTEX_B_3156 geneContig_59 7674..8060 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11088_1exon_11088_1Tribonema minus UTEX_B_3156 exonContig_59 7674..8060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11088CDS_11088Tribonema minus UTEX_B_3156 CDSContig_59 7674..8060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168621Trimin1|168621|e_gw1.59.48.1Tribonema minus UTEX_B_3156 polypeptideContig_59 7674..8060 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11088 ID=mRNA_11088|Name=jgi.p|Trimin1|168621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_59:7674..8060+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCATCAGCTCACAGTGCTACCCGACAGCATTAACGGGCTTGCTGCCCT
GAAGGAGATGAATTTACACAATATGCCAGGGCTGGCTGTATTGCCGGACA
CCATCTGCGCACTGCAGAGTCTGGTAACACTGGAGATCAGTGAGTGCTCT
GGGCTCACATCGCTGCCGGGTGCCGTAGAAAACCTGCAATCTCTAAGAGA
AGTATGTGTTACCGAGTGCACAGAGCTGGCAACCCTGCTTGATTCCTTTG
CGCGTTTGAGCACACTGCAGCTGTCTGTTGACGAGCATCCGAAGTTGACG
GGGGTGCCTGACGCCATAACGCAGATGAGCGGTTTCAGCAGCAGTCCTTC
ATTGCATGGCTGCCTTGATGGCTTTGATGCGCACTGA
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protein sequence of jgi.p|Trimin1|168621

>Trimin1|168621|e_gw1.59.48.1 ID=Trimin1|168621|e_gw1.59.48.1|Name=jgi.p|Trimin1|168621|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
CHQLTVLPDSINGLAALKEMNLHNMPGLAVLPDTICALQSLVTLEISECS
GLTSLPGAVENLQSLREVCVTECTELATLLDSFARLSTLQLSVDEHPKLT
GVPDAITQMSGFSSSPSLHGCLDGFDAH*
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mRNA from alignment at Contig_59:7674..8060+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11088 ID=mRNA_11088|Name=jgi.p|Trimin1|168621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_59:7674..8060+ (Tribonema minus UTEX_B_3156 )
TGCCATCAGCTCACAGTGCTACCCGACAGCATTAACGGGCTTGCTGCCCT
GAAGGAGATGAATTTACACAATATGCCAGGGCTGGCTGTATTGCCGGACA
CCATCTGCGCACTGCAGAGTCTGGTAACACTGGAGATCAGTGAGTGCTCT
GGGCTCACATCGCTGCCGGGTGCCGTAGAAAACCTGCAATCTCTAAGAGA
AGTATGTGTTACCGAGTGCACAGAGCTGGCAACCCTGCTTGATTCCTTTG
CGCGTTTGAGCACACTGCAGCTGTCTGTTGACGAGCATCCGAAGTTGACG
GGGGTGCCTGACGCCATAACGCAGATGAGCGGTTTCAGCAGCAGTCCTTC
ATTGCATGGCTGCCTTGATGGCTTTGATGCGCACTGA
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Coding sequence (CDS) from alignment at Contig_59:7674..8060+

>mRNA_11088 ID=mRNA_11088|Name=jgi.p|Trimin1|168621|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_59:7674..8060+ (Tribonema minus UTEX_B_3156 )
TGCCATCAGCTCACAGTGCTACCCGACAGCATTAACGGGCTTGCTGCCCT
GAAGGAGATGAATTTACACAATATGCCAGGGCTGGCTGTATTGCCGGACA
CCATCTGCGCACTGCAGAGTCTGGTAACACTGGAGATCAGTGAGTGCTCT
GGGCTCACATCGCTGCCGGGTGCCGTAGAAAACCTGCAATCTCTAAGAGA
AGTATGTGTTACCGAGTGCACAGAGCTGGCAACCCTGCTTGATTCCTTTG
CGCGTTTGAGCACACTGCAGCTGTCTGTTGACGAGCATCCGAAGTTGACG
GGGGTGCCTGACGCCATAACGCAGATGAGCGGTTTCAGCAGCAGTCCTTC
ATTGCATGGCTGCCTTGATGGCTTTGATGCGCACTGA
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