mRNA_11075 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351370
Unique NamemRNA_11075
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A836C905_9STRA (Endoplasmic reticulum vesicle transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C905_9STRA)

HSP 1 Score: 846 bits (2185), Expect = 4.730e-309
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 1
Query:    1 MSLSSIASFATDTIKDEGIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAVRKTHGLCHMRRCV 1278
            MSLSSIASFATDTIKDEGIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAVRKTHGLCHMRRCV
Sbjct:    1 MSLSSIASFATDTIKDEGIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAVRKTHGLCHMRRCV 426          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A7S3H281_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H281_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.040e-86
Identity = 172/410 (41.95%), Postives = 232/410 (56.59%), Query Frame = 1
Query:   70 KRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTN---VTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQ----GGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSK----AGAAVAGGAGDTAGAMLLR-----TFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPL-SGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAVRKT 1248
            K++D +     +FR  T  GAL+S ++ ++   L   E+ Y +   T  +L V+      G RTN   V FDI F  I C+ +S+ A D+ G PQ +  H + K +L   G       R E+G+T++ E  L     E   +   AD  K         G CG+CYGAG PG+CC TC +VK  Y+++GW F P  + QC       A  A          GC L G LDL++  G+ H AP  K    AG A +G  G  AG   L      TF  FN +HTI+ L FG+N PG+  PL+GE+R ++D++GMYQYYIKVVPT YK L S   + +NQY+VTEH+ H+ PGSGRGLPGVY +YE+S I A  EE R G+L F+TS CAIVGG ++V+GL+D  + AV KT
Sbjct:   16 KKIDAFPKAFDDFRVKTTTGALVSIISIIIMATLFFSEMSYFLKTETVDHLYVN------GTRTNKLHVDFDISFHDIPCNLLSVDAMDDTGVPQKDAVHEIYKHKLSVAGEKQGFPERQELGNTVRTEAEL-----EDLVKSQSADLVKQGAILKEQIGACGNCYGAGSPGQCCQTCLDVKQAYQRVGWRFKPHGIIQC----TSEAFMANMNEQFAEDGGCQLYGSLDLNRGSGHFHIAPHKKLHQPAGDA-SGRPGQNAGLFNLMDLISFTFDQFNVSHTINTLSFGDNFPGIKSPLDGETRGVQDTHGMYQYYIKVVPTRYKALYSTTEIQSNQYAVTEHMSHLAPGSGRGLPGVYFHYEVSPIQALFEEKRGGMLGFITSCCAIVGGAFSVMGLVDVFLGAVLKT 409          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A7S2W0R9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0R9_9STRA)

HSP 1 Score: 278 bits (710), Expect = 6.870e-86
Identity = 165/404 (40.84%), Postives = 224/404 (55.45%), Query Frame = 1
Query:   55 IMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQGGCGDCYGA-GEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSG--PSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVI-TAVRKTHG 1254
            +M   + LD +     EFR  T HGA+ S VA +    L   E  Y   V     L V+S          V FDIKF  I CD +S+ A D +G  Q  + H+V K +LD++G   D   RH    T++ E  L                  D   +  CG+CYGA  +P  CC+TC+EV+  Y   GW+F PDE+ QC+P  V  ++  + E      EGC + G ++L+K  GN HFAP     AA   G    +  M L T+ +FN +H I  L FG + PG+  PL+ +SR + D  GMYQYY+KVVPTTYK L+     + +NQYSVTEHL+HV PGSGRGLPGV+ +YE+S + A+ EE R G L+F+ SVCAI+GG++T++GL D V+  A  K  G
Sbjct:    8 VMDTLRSLDAFPKHGEEFRVRTTHGAMASVVAIVAMLYLFVSEFYYYSRVEVVDRLVVNSSHADT---LKVRFDIKFHHIPCDLLSLDAMDTSGQRQEELVHNVFKRKLDAEGNKADRPERHRELGTLQHEHQL-----------------SDPGEKPACGNCYGARDDPDACCNTCEEVRIAYEDKGWAFHPDEIEQCQPAKVLSSIDPETE------EGCNIFGNVELTKLSGNFHFAPGEHLQAAARSGQMSFSDLMSL-TYKSFNISHDIRTLAFGNHFPGIQNPLDRQSRSVSDGSGMYQYYVKVVPTTYKFLNRRRKDLVSNQYSVTEHLRHVTPGSGRGLPGVWFFYEVSPVQATFEETRQGTLEFIASVCAILGGVFTIIGLADRVVGVAFEKLRG 384          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: W7TMC0_9STRA (Endoplasmic reticulum-golgi intermediate compartment protein 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMC0_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.830e-84
Identity = 164/421 (38.95%), Postives = 225/421 (53.44%), Query Frame = 1
Query:   43 KDEGIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQGG--------------------CGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAVRK 1245
            KD  +  R +RLD++   K +F+  T +G   S VA      L   EL+YSM      ++ V+S  D    R    F++ FP ++C  +S  A D  G  Q  V+ HV K RLDS G  + A + H++GDT  +E  LL  E ++ A+        +   + G                    CGDCYGAGEPG+CC+TC EVK  Y   GW+F    V QC+   +  +     E      EGC + G L L+   GNVHFAP  +   + A    D    ++  TF  FN +H I  L  GE  PG   PL  + R + D YGMYQYY+KVVPT YK LS P   +NQY+V+EH++H+ PGS RGLPGV+ +Y+ S +    +E R GLL FLTSVCAIVGG+++V G++D V+  + K
Sbjct:    9 KDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDT---RLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEXXXXXXEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFGDGAE------EGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVAD----LVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMK 416          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A7S4IKK9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKK9_9STRA)

HSP 1 Score: 274 bits (700), Expect = 7.860e-84
Identity = 161/417 (38.61%), Postives = 232/417 (55.64%), Query Frame = 1
Query:   52 GIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQH---NVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETAL-------LGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRT------FAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAVRKTHG 1254
            G   R + LD +    AEFR  T+ GAL+S    L    L+  E  +         + V++   PAG    + FDI F  + C  +++ A+D  G  Q    +  H V K R++  G M+   S+ E+G T  DE +L       LG E E   ++ +  +A D+  +  CGDCYGAGE GECC+TCD+VK  Y++  W     +V QCR            ++A    EGC + G + LS   GN+H AP    G    G     A  +   T      F  FN +HT++++RFG+  PG ++ L+G+ R++ D YGMYQYY++VVPT Y+ L G  + TNQYSVTEH++HV PGSGRGLPGV+++YE+S +   +EE R G ++FLTSVCA VGG++TV+G+ D  I A  ++ G
Sbjct:   30 GFAERLRSLDAHTPAAAEFRVRTIQGALLSVFTLLSIAYLVRIEYGFHFLTEVLDRVHVNAT-TPAG--LEMEFDITFHSVPCALLNVDAQDPTGQSQSLHLDRTHRVFKHRINKNGKMIGRKSKFELGGTFADERSLRDMGKEELGLEDE---KEEVEGTASDSSDEDECGDCYGAGEEGECCNTCDDVKRAYQRRSWHIDLAKVKQCRKDV---------KSADEEGEGCNVHGTVALSTGGGNLHLAPGR--GLEKFGKEKQDADFVTSLTEFIEEAFETFNVSHTVNRIRFGQEYPGDLHQLDGQKRIVEDDYGMYQYYVQVVPTVYRKLDGTEIATNQYSVTEHMRHVTPGSGRGLPGVFIFYEVSALHVEMEEYRRGWIRFLTSVCAAVGGVFTVMGMADRAIFARSRSTG 429          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: D7FL32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL32_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 9.890e-84
Identity = 164/424 (38.68%), Postives = 238/424 (56.13%), Query Frame = 1
Query:   58 MARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEA--------------------------AARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRT-FAAFNTTHTIDKLRFGENAP-GMVYP--------LEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLID 1221
            + + KRLD Y  PK EF++ TVHGA+++ V      VL  REL +SM   T  NL V+S              + F RI C  +S+ AED  G PQ +++H VT+ RLDS G  LD G +HE+G+T+K   A++ +E E                             +++L D+A     +  C +CYGAG  GECC TC++V+  YR+ GW  +P E+P C    +    A   E+     EGC L+G+L++S+  GN HFAP  +    +   A + +    ++    +FNTTHTI+ L FG+  P G   P        LEG  + ++D++ M+QY++++VPT Y+  +G +V +NQYS TEHLKHV  G+ RGLPGVY YYE+S + A +EE R G L FLT  C +VGG+YT+LGL++
Sbjct:   26 LRKLKRLDIYSRPKREFQRATVHGAMVTIVLVGAVLVLTWRELVFSMKRETVENLFVNSTIXXXXXXXXX---VVFARIPCGFLSLDAEDALGIPQEDLRHDVTRTRLDSIGRALDDGEKHEMGNTLK---AVIAKEEEKXXXXXXXXXXXXXXXXXXXXXXXXXXVEQRALEDTATTGQ-EDEC-NCYGAGAEGECCRTCEDVRKAYRRKGWRLNPAEIPACAGEALSANSANTMESPPVENEGCRLAGHLEVSRTEGNFHFAPGHR----LHRHANELSFVDRIQVALESFNTTHTINTLTFGDQPPPGHASPKHAVASTVLEGHQKTVQDTHAMHQYFLQLVPTVYRLDNGETVHSNQYSATEHLKHVHDGTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVN 437          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A7S3PYC5_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYC5_9STRA)

HSP 1 Score: 266 bits (680), Expect = 3.440e-81
Identity = 158/413 (38.26%), Postives = 231/413 (55.93%), Query Frame = 1
Query:   46 DEGIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQH---NVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSL--ADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPD-EVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLL---------RTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAV 1239
            ++ +  R K  D++    +EFR  T +GAL+S    LL   LI  E QY++       + V++   PAG    + FD+ FP +AC  +++ A D  G PQ    +  H V K R+D  G+ +   S+ E+G+T + E  +    GE A +  +  A    D      CG CYGAG+  ECC+TCD+VK  Y++ GW F  D +V QC+          +  +     EGC + G + LS   GN+H AP             +  G  +L         + F  F+ +H ++KLRFG+  PG  + L+GE R+I D+YGMYQYYIK+VPT YK L+G +V TNQYSVTEH++HV PGS RGLPG++ YYE+S +   I E R G ++FLTSV A+VGG+++ + L+D+ I +V
Sbjct:    9 EKTVSQRLKNFDYHTTVASEFRVKTSNGALLSVATLLLILYLILTEFQYNLTPSLRERVHVNAT-TPAG--IEMEFDVTFPNVACALVNVDAGDPLGQPQSMHIDRTHRVFKHRMDKNGHFVGKKSKFELGNTFQAEEHI----GEYAEKTDMEFAKDEDDYYYDKECGSCYGAGDQDECCNTCDDVKRAYQRKGWLFPKDLDVKQCK---------QQKNSHDMEGEGCNVHGVVALSSGGGNLHLAPGHDM---------ENFGKQVLFSSLEDFINQAFETFDVSHKVNKLRFGKTYPGEYHQLDGEERMIEDAYGMYQYYIKIVPTVYKFLNGTTVETNQYSVTEHMRHVSPGSSRGLPGIFFYYEVSALHVEIVEYRQGWIRFLTSVAAVVGGVFSTMSLLDNYIFSV 396          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A482SKL0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKL0_9ARCH)

HSP 1 Score: 265 bits (677), Expect = 4.330e-81
Identity = 147/343 (42.86%), Postives = 209/343 (60.93%), Query Frame = 1
Query:  214 TNLEVDSRFDPAGRRTNVT--FDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITA 1236
            T ++VD  F    R + +T  FD+ F  I+C  +++ A D+ G  Q +  H + K RL  +G  + +  + ++G T+ +E  L     E  A+++L    K   A G CG CYGAG PG+CC+TC +VKD Y ++GW F    V QC        ++   E  A    GC + G L LSK  G+ H AP+ K     A G       ++  TF  FN TH+++ L FG++ PG+  PL+G+ R+++D++GMYQY+IKVVPT YKPL+ P V +NQYSVTEH+  + PGSGRGLPGVY YYE+S I A IEE +   + FLTSVCAIVGG YTV+GL+D ++++
Sbjct:   38 TQMKVDHLFVNTTRASQLTIDFDLSFTSISCSMLAVDAFDDRGMSQVDAVHEIYKHRLSPEGEKVGSAEQADLGHTLLNEAQL-----ENIAKETLEMKEKAKEAIGVCGKCYGAGRPGQCCNTCQDVKDAYERLGWHFKAQGVVQCS---TEAYISTLREQYAEDG-GCQVYGRLHLSKTSGHFHIAPTKKVHEKQANGGMFNILDLISFTFDQFNVTHSVNALSFGDHFPGINSPLDGQHRLVKDTHGMYQYFIKVVPTRYKPLNKPEVQSNQYSVTEHMSTLAPGSGRGLPGVYFYYEVSPIQAFIEEKKRSWMHFLTSVCAIVGGAYTVMGLLDILLSS 371          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A7S1CIR7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIR7_9STRA)

HSP 1 Score: 265 bits (676), Expect = 7.230e-80
Identity = 167/429 (38.93%), Postives = 227/429 (52.91%), Query Frame = 1
Query:   52 GIMARAKRLDFYGAPKAE---FRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRF-------------------DPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDETALLGREGEAAARKSLADSAKDAPA---------QGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSFSPDEVPQCRP-GFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSY-GMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLIDHVITAV 1239
            G++ + +RLD +  PKA+   F + T  GA +S  A +L  VL A EL + ++ R    +EVD                        +G    + FD+ FP +AC  + + A D +GA Q  V H+V K RLD  G       ++E+G TI  +  LL +           ++ KD  A            CG CYGAG PG+CC  C+EV+D YRK GW+F P  V QCR  GFV        + AA   EGC + GYL++ +  GN HFAP     +A +         +L  T   FN THTI+KL FG+  PG   PL+G S+ + +   GM+QYY  VVPTTY    G  V TNQYSVTEH + ++P +  GLPGV+++YELS I AS+ E     L FLT VCAIVGG++TVLGL+D  +  +
Sbjct:   39 GLLDKIRRLDAF--PKAQDDGFWERTNAGAAVSVCAVVLMLVLFASELSHFLSTRVVERMEVDGDVGLGGANFAEGTEVAEAAGASVSGDNIAIHFDVTFPSMACAVVGLDAMDLSGAQQLEVAHNVYKRRLDGNGRPFGVSEKNELGKTITTKEQLLAQXXXXXXXXXAEETDKDRAAVEADEGKQRNADCGSCYGAGAPGQCCSKCEEVRDLYRKKGWAFHPSTVAQCRQEGFVE-------DVAATDGEGCNIYGYLEVPRVAGNFHFAPGHSFQSAAS-----HVHDLLSYTVGQFNLTHTINKLSFGQEYPGQRNPLDGYSKALPEGQTGMFQYYTTVVPTTYVHGDGRVVKTNQYSVTEHFQRLQPETTEGLPGVFVFYELSPIRASLREEARSFLHFLTRVCAIVGGVFTVLGLVDQAVHGI 453          
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Match: A0A1E7FEK4_9STRA (DUF1692-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEK4_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.030e-79
Identity = 161/407 (39.56%), Postives = 223/407 (54.79%), Query Frame = 1
Query:   52 GIMARAKRLDFYGAPKAEFRKGTVHGALMSAVAFLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIACDHISISAEDNNGAPQH---NVQHHVTK--IRLDSQGYMLDAGSRH--EVGDTIKDETA-----LLGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDKYRKMGWSF-SPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKARGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENAPGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEHLKHVEPGSGRGLPGVYLYYELSTITASI-EELRPGLLKFLTSVCAIVGGLYTVLGLIDHVI 1230
            G     ++ D + +   EFR  T HGA++S V  +    L+  E+ Y+  +  T  + V++   P G   +V FDI  P + C  + I A D +G  Q    + +HHV K  I++D +G +   G +   E G T+K+E        + +E      K + D  ++      CG C+GAGE GECCDTCD+VK  Y + GW   +PDE+ QCR          K        EGC + G + L    G+ H AP  +   A+      +   MLL TF  FN THT+ K+RFG+  PG    L+G +RVI D YGMYQYY K+VPT  K  +G S+ TNQYSVTEHL+HV PG GRGLPGV+ +YE+S +   I E+ R G L F TSVCAIVGG+ T +GL+D ++
Sbjct:    2 GFQENLRKFDNHSSVSKEFRVYTFHGAVLSVVTVIAITYLVFTEMGYNFKLIMTERVHVNAT-SPTG--LDVEFDISLPLVPCSVLKIDANDPSGQTQSLHLDQRHHVWKHRIKVDDEGEIEFLGDKRKLEQGSTLKEEHLEELFDTMNKE------KGVTDDEEEKTVD--CGSCFGAGEEGECCDTCDDVKRAYTRKGWHIQNPDEIDQCR--------KEKKNVKEDEGEGCNVHGLVALDSGGGSFHLAPGREMDHAMDPSDIGSIFEMLLSTFEQFNMTHTVHKIRFGDAFPGNKNQLDGVNRVIADGYGMYQYYFKIVPTLVKFKNGTSIQTNQYSVTEHLRHVNPGGGRGLPGVFFFYEISPLHVEIVEDYRKGYLGFFTSVCAIVGGVVTTMGLLDQIL 389          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351370 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C905_9STRA4.730e-309100.00Endoplasmic reticulum vesicle transporter-domain-c... [more]
A0A7S3H281_9STRA1.040e-8641.95Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2W0R9_9STRA6.870e-8640.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TMC0_9STRA1.830e-8438.95Endoplasmic reticulum-golgi intermediate compartme... [more]
A0A7S4IKK9_9STRA7.860e-8438.61Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
D7FL32_ECTSI9.890e-8438.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3PYC5_9STRA3.440e-8138.26Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A482SKL0_9ARCH4.330e-8142.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1CIR7_9STRA7.230e-8038.93Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1E7FEK4_9STRA1.030e-7939.56DUF1692-domain-containing protein n=1 Tax=Fragilar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:543562..545995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351370|estExt_Genemark1.C_Ctg_880065
BRITEko00000,ko00001,ko00002,ko01000,ko04131
KEGG rclassRC00002,RC00078
KEGG ReactionR03469
KEGG ModuleM00130
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG koko:K00889,ko:K20365,ko:K20367
EC2.7.1.68
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Preferred nameERGIC3
Descriptionvesicle-mediated transport
COG categoryD
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0445@1|root,KOG2667@2759|Eukaryota
Evalue4.08e-85
Seed ortholog2880.D7FL32
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionEndoplasmic reticulum vesicle transporter, C-terminal
Ec32 orthologEc-05_006830.1
TranscriptId351692
TrackFilteredModels1
ProteinId351370
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351370gene_11075Tribonema minus UTEX_B_3156 geneContig_88 543562..545995 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11075_2exon_11075_2Tribonema minus UTEX_B_3156 exonContig_88 543562..544863 -
exon_11075_1exon_11075_1Tribonema minus UTEX_B_3156 exonContig_88 545881..545995 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11075UTR3_11075Tribonema minus UTEX_B_3156 three_prime_UTRContig_88 543562..543697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11075CDS_11075Tribonema minus UTEX_B_3156 CDSContig_88 545881..545995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351370Trimin1|351370|estExt_Genemark1.C_Ctg_880065Tribonema minus UTEX_B_3156 polypeptideContig_88 543698..545995 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11075 ID=mRNA_11075|Name=jgi.p|Trimin1|351370|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1417bp|location=Sequence derived from alignment at Contig_88:543562..545995- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTGAGCAGCATCGCCAGCTTTGCCACGGATACAATCAAGGATGA
GGGGATCATGGCGAGGGCCAAACGATTAGACTTCTATGGAGCACCGAAAG
CGGAGTTTCGCAAGGGCACCGTCCACGGGGCGCTCATGTCGGCGGTGGCC
TTCCTCCTGGCGTGCGTGCTCATAGCGCGCGAGCTCCAGTACTCCATGGC
GGTGCGCACCACCACCAACCTCGAGGTGGACAGTCGCTTCGACCCCGCGG
GGCGCAGAACCAACGTCACCTTCGACATCAAGTTCCCGCGCATCGCTTGC
GACCACATCTCCATCAGCGCGGAGGACAACAACGGCGCGCCGCAGCACAA
CGTGCAGCACCACGTCACCAAGATTCGCCTAGATTCGCAGGGGTACATGC
TGGATGCGGGCTCGCGCCATGAAGTCGGCGACACGATAAAGGACGAAACG
GCGCTGCTGGGGCGGGAGGGGGAGGCGGCGGCGCGCAAGTCCCTCGCGGA
TAGCGCCAAAGACGCCCCTGCGCAGGGGGGGTGCGGGGACTGCTACGGGG
CGGGGGAGCCCGGGGAGTGCTGCGACACGTGCGACGAGGTGAAGGACAAG
TACCGCAAGATGGGGTGGAGCTTCAGCCCCGACGAAGTGCCGCAATGTCG
GCCGGGCTTCGTTCCGGGGGCTGTCGCCGCCAAGCCGGAGGCAGCGGCAC
CACCCCGGGAGGGGTGCTATCTCAGCGGGTACCTGGATCTGAGCAAGGCG
CGGGGGAACGTGCACTTCGCGCCGAGTAGTAAGGCGGGAGCGGCGGTTGC
GGGGGGGGCGGGGGACACTGCGGGGGCGATGCTGCTGCGCACATTCGCCG
CATTTAATACCACGCACACGATCGACAAGCTGCGGTTCGGGGAGAACGCG
CCGGGGATGGTGTACCCCCTGGAGGGGGAGTCGCGGGTGATCCGGGACTC
GTACGGTATGTATCAGTACTACATCAAGGTGGTGCCCACTACGTACAAGC
CGCTGTCGGGCCCCTCTGTGACGACCAATCAGTACAGCGTCACTGAACAT
CTAAAGCACGTGGAACCGGGTAGCGGCAGGGGGCTACCAGGGGTGTACCT
GTACTACGAGCTCAGCACGATAACTGCGAGTATTGAGGAGCTGCGGCCGG
GGCTGTTGAAGTTCCTGACGAGCGTGTGCGCAATTGTGGGGGGGTTGTAT
ACGGTGCTAGGGCTGATTGACCACGTCATTACGGCGGTGCGGAAGACCCA
TGGGTTGTGCCACATGCGGCGGTGTGTATGACACATGCGACGGTGTGTAT
GACATGTAGCAGTTTTCACATTGTATGGATGTATATGTCAGTGGTGGCAC
ACCGCGTTTGCGCATATGCAAGCCGTGTGAGGTCCAGTTCAGCAGGTAAA
CACATGCGCGCCCCCCC
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protein sequence of jgi.p|Trimin1|351370

>Trimin1|351370|estExt_Genemark1.C_Ctg_880065 ID=Trimin1|351370|estExt_Genemark1.C_Ctg_880065|Name=jgi.p|Trimin1|351370|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=427bp
MSLSSIASFATDTIKDEGIMARAKRLDFYGAPKAEFRKGTVHGALMSAVA
FLLACVLIARELQYSMAVRTTTNLEVDSRFDPAGRRTNVTFDIKFPRIAC
DHISISAEDNNGAPQHNVQHHVTKIRLDSQGYMLDAGSRHEVGDTIKDET
ALLGREGEAAARKSLADSAKDAPAQGGCGDCYGAGEPGECCDTCDEVKDK
YRKMGWSFSPDEVPQCRPGFVPGAVAAKPEAAAPPREGCYLSGYLDLSKA
RGNVHFAPSSKAGAAVAGGAGDTAGAMLLRTFAAFNTTHTIDKLRFGENA
PGMVYPLEGESRVIRDSYGMYQYYIKVVPTTYKPLSGPSVTTNQYSVTEH
LKHVEPGSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLY
TVLGLIDHVITAVRKTHGLCHMRRCV*
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mRNA from alignment at Contig_88:543562..545995-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11075 ID=mRNA_11075|Name=jgi.p|Trimin1|351370|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2434bp|location=Sequence derived from alignment at Contig_88:543562..545995- (Tribonema minus UTEX_B_3156 )
ATGAGCTTGAGCAGCATCGCCAGCTTTGCCACGGATACAATCAAGGATGA GGGGATCATGGCGAGGGCCAAACGATTAGACTTCTATGGAGCACCGAAAG CGGAGTTTCGCAAGGGTGAGAACTGGTTTGTGTGGGGACAGTTGAAGCTG ACCTAACTGCTTGCTGAAAGCTCTATCTGGTTGCTTTTGACAGTAAAGCG ATGAATAACGACGTAGCAGCATGTATAATCGAAACAAGTTACAGCACCAG GTCAAGTAGTAGCGTCTGCAACAGAGAGAAGGCGCAGAATACAGCGCCAG CAGGCACAGTAACTCTGAATCGAAATTTGATGCATGCTACACCTGCAATC ACTGCATATATCACGACCAATAGCTCTGATAGTGAACCAGTTCGATCAGT CCAGCATGTGGATCAAGTCAAGTGGTGCATTGTGCGGGCGCTTCTTTGAG CGAGCAACTGCAGAAACCTGCAGCTGCGCACTACCAAAATACACATGGGT CAAGAGTCGAGCAGACCTGGCATACTGGTTCGTTTAAACAACCGCAAACA TCCACACACCTCTGCGCCTGAGCATTTACATTCTGTGCATCTGAAAGCAG GTTCAGACAATGAGTACAATGTTTGAGTTTTGTATATGTAATCAAGGCAT CTTGATGAGTACCATGTTTGAGCTTTGTTTATGGGATCAAGGCATCTTGC AGCTTAATGGAGGGTCAGCACAATGTTGTTGCAGTACGCAAGTGTAGCAA GTGTGTACAAGGCCAGAAAGAACACTACAGCAGCTGTTGAATGTCAACAA TGACCTAGAGTGTGAACTGAACTCGTTGTTTTCAAATGTCGCGGTTTACC GCTGGGACAACGCGTCGCTTCATTCCGACATCAACTGCACCATCTAAAAG TAGCCATGTGTCAGTGCCTTCACATGCCGCAGCACCACCGTCTGGCTCGC TAGGTGCACGTCCTGGCGGACACTGAAATGACGCAATACACGGACGCAGT GAACTGTGAGAAAAATCGATCATCATCAGTGCTCAGCACCAACGCGCGAC TCGTGCGCAAGCGCGTTGCCATCGACGACTCGCACTGACTCCTCCATTGC ATTCGCGCTACTGCGCACCACCACACTTGCAGGCACCGTCCACGGGGCGC TCATGTCGGCGGTGGCCTTCCTCCTGGCGTGCGTGCTCATAGCGCGCGAG CTCCAGTACTCCATGGCGGTGCGCACCACCACCAACCTCGAGGTGGACAG TCGCTTCGACCCCGCGGGGCGCAGAACCAACGTCACCTTCGACATCAAGT TCCCGCGCATCGCTTGCGACCACATCTCCATCAGCGCGGAGGACAACAAC GGCGCGCCGCAGCACAACGTGCAGCACCACGTCACCAAGATTCGCCTAGA TTCGCAGGGGTACATGCTGGATGCGGGCTCGCGCCATGAAGTCGGCGACA CGATAAAGGACGAAACGGCGCTGCTGGGGCGGGAGGGGGAGGCGGCGGCG CGCAAGTCCCTCGCGGATAGCGCCAAAGACGCCCCTGCGCAGGGGGGGTG CGGGGACTGCTACGGGGCGGGGGAGCCCGGGGAGTGCTGCGACACGTGCG ACGAGGTGAAGGACAAGTACCGCAAGATGGGGTGGAGCTTCAGCCCCGAC GAAGTGCCGCAATGTCGGCCGGGCTTCGTTCCGGGGGCTGTCGCCGCCAA GCCGGAGGCAGCGGCACCACCCCGGGAGGGGTGCTATCTCAGCGGGTACC TGGATCTGAGCAAGGCGCGGGGGAACGTGCACTTCGCGCCGAGTAGTAAG GCGGGAGCGGCGGTTGCGGGGGGGGCGGGGGACACTGCGGGGGCGATGCT GCTGCGCACATTCGCCGCATTTAATACCACGCACACGATCGACAAGCTGC GGTTCGGGGAGAACGCGCCGGGGATGGTGTACCCCCTGGAGGGGGAGTCG CGGGTGATCCGGGACTCGTACGGTATGTATCAGTACTACATCAAGGTGGT GCCCACTACGTACAAGCCGCTGTCGGGCCCCTCTGTGACGACCAATCAGT ACAGCGTCACTGAACATCTAAAGCACGTGGAACCGGGTAGCGGCAGGGGG CTACCAGGGGTGTACCTGTACTACGAGCTCAGCACGATAACTGCGAGTAT TGAGGAGCTGCGGCCGGGGCTGTTGAAGTTCCTGACGAGCGTGTGCGCAA TTGTGGGGGGGTTGTATACGGTGCTAGGGCTGATTGACCACGTCATTACG GCGGTGCGGAAGACCCATGGGTTGTGCCACATGCGGCGGTGTGTATGACA CATGCGACGGTGTGTATGACATGTAGCAGTTTTCACATTGTATGGATGTA TATGTCAGTGGTGGCACACCGCGTTTGCGCATATGCAAGCCGTGTGAGGT CCAGTTCAGCAGGTAAACACATGCGCGCCCCCCC
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Coding sequence (CDS) from alignment at Contig_88:543562..545995-

>mRNA_11075 ID=mRNA_11075|Name=jgi.p|Trimin1|351370|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1281bp|location=Sequence derived from alignment at Contig_88:543562..545995- (Tribonema minus UTEX_B_3156 )
ATGAGCTTGAGCAGCATCGCCAGCTTTGCCACGGATACAATCAAGGATGA
GGGGATCATGGCGAGGGCCAAACGATTAGACTTCTATGGAGCACCGAAAG
CGGAGTTTCGCAAGGGCACCGTCCACGGGGCGCTCATGTCGGCGGTGGCC
TTCCTCCTGGCGTGCGTGCTCATAGCGCGCGAGCTCCAGTACTCCATGGC
GGTGCGCACCACCACCAACCTCGAGGTGGACAGTCGCTTCGACCCCGCGG
GGCGCAGAACCAACGTCACCTTCGACATCAAGTTCCCGCGCATCGCTTGC
GACCACATCTCCATCAGCGCGGAGGACAACAACGGCGCGCCGCAGCACAA
CGTGCAGCACCACGTCACCAAGATTCGCCTAGATTCGCAGGGGTACATGC
TGGATGCGGGCTCGCGCCATGAAGTCGGCGACACGATAAAGGACGAAACG
GCGCTGCTGGGGCGGGAGGGGGAGGCGGCGGCGCGCAAGTCCCTCGCGGA
TAGCGCCAAAGACGCCCCTGCGCAGGGGGGGTGCGGGGACTGCTACGGGG
CGGGGGAGCCCGGGGAGTGCTGCGACACGTGCGACGAGGTGAAGGACAAG
TACCGCAAGATGGGGTGGAGCTTCAGCCCCGACGAAGTGCCGCAATGTCG
GCCGGGCTTCGTTCCGGGGGCTGTCGCCGCCAAGCCGGAGGCAGCGGCAC
CACCCCGGGAGGGGTGCTATCTCAGCGGGTACCTGGATCTGAGCAAGGCG
CGGGGGAACGTGCACTTCGCGCCGAGTAGTAAGGCGGGAGCGGCGGTTGC
GGGGGGGGCGGGGGACACTGCGGGGGCGATGCTGCTGCGCACATTCGCCG
CATTTAATACCACGCACACGATCGACAAGCTGCGGTTCGGGGAGAACGCG
CCGGGGATGGTGTACCCCCTGGAGGGGGAGTCGCGGGTGATCCGGGACTC
GTACGGTATGTATCAGTACTACATCAAGGTGGTGCCCACTACGTACAAGC
CGCTGTCGGGCCCCTCTGTGACGACCAATCAGTACAGCGTCACTGAACAT
CTAAAGCACGTGGAACCGGGTAGCGGCAGGGGGCTACCAGGGGTGTACCT
GTACTACGAGCTCAGCACGATAACTGCGAGTATTGAGGAGCTGCGGCCGG
GGCTGTTGAAGTTCCTGACGAGCGTGTGCGCAATTGTGGGGGGGTTGTAT
ACGGTGCTAGGGCTGATTGACCACGTCATTACGGCGGTGCGGAAGACCCA
TGGGTTGTGCCACATGCGGCGGTGTGTATGA
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