mRNA_11044 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142203
Unique NamemRNA_11044
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A836C7F0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7F0_9STRA)

HSP 1 Score: 397 bits (1021), Expect = 7.310e-140
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPGEAPRLERQFRLLRHDLVASMREEIDALRA 615
            LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPGEAPRLERQFRLLRHDLVASMREEIDALRA
Sbjct:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPGEAPRLERQFRLLRHDLVASMREEIDALRA 205          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: D8LJR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.080e-31
Identity = 85/215 (39.53%), Postives = 123/215 (57.21%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESL---LEATGQAL------PASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPGE--APRLERQFRLLRHDLVASMREEIDALR 612
            +PFI+WLG ++LS GTC   QQ I   + R PGL +NLL+ LN C    +E A+ WF++R++   G+ G  ARS  +          +E A V +L  S+   ++A  Q L      P+    +N   AA      G G S+EA + +  GGRH NDH DFRS+ + P+V E+ C++ P+LP   E   P L+RQFRLLRHDLV+S+ + +  L+
Sbjct:   78 MPFIAWLGKDELSIGTCSFKQQLICNRLARAPGLLDNLLEALN-CDEISNEMALLWFVERLILDDGQDGVAARSSSS----------KESALVNRLKRSMSPTVKAQAQKLLKVLSDPSEVDKRNAEIAAT-----GGGMSIEATQESSPGGRHSNDHVDFRSITIVPSVDEVLCDKIPFLPTEMERDVPHLDRQFRLLRHDLVSSVVDAVTPLK 276          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A6H5JSW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.190e-31
Identity = 82/207 (39.61%), Postives = 119/207 (57.49%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMR-AMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPGEA--PRLERQFRLLRHDLVASMREEIDALR 612
            +PFI+WLG ++LS GTC   QQ I   + R PGL +NLL+ LN C    D  ++ WF++R++   G+ G  ARS  +   A+   L       V+   + LL+      P+    +N   AA      G G S+EA +A+  GGRH NDH DFRS+ + P+V E+ C++ P+LP   E   P L+RQFRLLRHDLV+S+ + +  L+
Sbjct:   78 MPFITWLGNDELSIGTCSFKQQLICNRLARAPGLLDNLLEALN-CDKISDNMSLLWFVERLILDDGQDGVTARSSNSKESALVNRLKRSTSPTVKAQAQKLLKVLSD--PSEVDKRNAEIAAT-----GGGLSIEAIQASSPGGRHSNDHVDFRSITIVPSVDEVLCDKIPFLPTEMERDIPHLDRQFRLLRHDLVSSVVDAVTPLK 276          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A6U2HPZ1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A6U2HPZ1_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 1.510e-14
Identity = 66/213 (30.99%), Postives = 100/213 (46.95%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPG--------EAPRLERQFRLLRHDLVASMREEIDALRA 615
            +  ++ LG++ LS GTC      ++  V+ +PGL   +       S + D   +AW+L RV          AR  + +  MA +L     AA +   + L      A+P+ +  +      A++P   +G           GGRHDNDHAD+R++   PT AE  C   PYLP  G        EA  L+RQFRLLR D +  +R+ +  LR+
Sbjct:  205 MSLLALLGSDALSVGTCRPLLSNVLTTVYHVPGLLGCIKTAAAEGSVS-DPSPIAWWLLRVA----VQDEHARQDQLVHDMADLLMSSSGAA-KCAAKDLKVVLSGAVPSLADQERL----ASMPLSAIGLGP--------GGRHDNDHADYRNIDACPTAAEAQCTRQPYLPHVGDTSFLDSPEAAHLDRQFRLLREDFIQPLRDNMALLRS 399          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A250WUI1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WUI1_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 4.750e-14
Identity = 71/223 (31.84%), Postives = 104/223 (46.64%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLAN--------NLLQGLNTCSPAI--DEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAG--GRHDNDHADFRSVRVEPTVAELSCEEPPYLPAP--------GEAPRLERQFRLLRHDLVASMREEIDAL 609
            LPF + +G+E L  GTC      ++  ++RIPGL +         +  G +  S ++  D   + WF   +     +   EAR    +  +A +L   E  A +         TG+ L     G    AAA A     V  SL A     AG  GRHDNDH D+RS+++ PT +E  C + PYLP           EA  ++RQFRL+R D++ ++R  I AL
Sbjct:   15 LPFFAMIGSEDLCSGTCRAPLLKLVGELYRIPGLLDCIRKACISEMSAGTSGDSGSVKPDLSPLGWFALTLA----QKDEEARKDPMLLQLADLLEASEGPAAK---------TGRQLRTVLAGTQAAAAAEA----DVSESLIAIEDIQAGPGGRHDNDHMDYRSIKIIPTASEALCIKLPYLPRAVDPSSLLSAEAALMDRQFRLMREDMMGALRTAISAL 220          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: C1EJH9_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJH9_MICCC)

HSP 1 Score: 76.6 bits (187), Expect = 9.900e-13
Identity = 71/222 (31.98%), Postives = 95/222 (42.79%), Query Frame = 1
Query:    4 PFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAP--------------------GEAPRLERQFRLLRHDLVASMREEIDAL 609
            PF+  L +E++  GT     + + + V+ I G   NL + +       D    A F+  V        SEAR  + +R +A  LAERE     +L   LL+    AL                     G S    R  + G RHDND+  FR VRV PT+ E+ CE  PYLP P                    G A  L+RQFRLLR D +A +REE+  L
Sbjct:   43 PFLKLLCSEEMILGTAKGPIEQLFDDVYEIVGFLQNLRKLIEEPDKIRDPTPFAQFIINVA----TRKSEAREDDDVRGIADALAERELPIAWRL-RVLLDDGPSAL---------------------GDSSTEDRLDLPGDRHDNDYKCFRDVRVLPTMEEVLCERKPYLPQPLSMSDARAAASAGDTNSVSSGVATLLDRQFRLLREDFIAPLREELQQL 238          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A836BYK2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYK2_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.700e-11
Identity = 69/221 (31.22%), Postives = 102/221 (46.15%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHA-VAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGES---LLEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLPAPG--------------EAPRLERQFRLLRHDLVASMREEIDAL 609
            +P +  LG++QL+  TC    + ++E ++R+PGL N + + +   + A+ E A V W+L  +   A     E R    +R +A +L  R   A +  G+    L  A                AAA  P  G G +LE       GGRHDNDH D+RS+++ PT  E      PYLP  G              +A  L+R FRLLR D V  +R+ +  L
Sbjct:  244 VPLLRLLGSDQLAGSTCRAPLRQLLEALYRVPGLLNCVAEAVE--AGAVAEAAPVGWWLLVLASQA----EEVRHSPEVRRVAELLRGRGGDAAKVAGQLQVVLAGAQXXXXXXXXXXXXLVEAAAGGPG-GSGVALEDLLLGP-GGRHDNDHTDYRSIKIVPTSDEALSGRQPYLPRAGGEAGAGAGAAPPDPQAALLDRHFRLLREDFVLPLRQTLGLL 456          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A150GQD9_GONPE (Helicase ATP-binding domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GQD9_GONPE)

HSP 1 Score: 70.1 bits (170), Expect = 1.870e-10
Identity = 73/234 (31.20%), Postives = 98/234 (41.88%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQA------LPASSPGQNTTAAA-----AAVPRYGVGRSLEAARAAVAGGRHDNDHADFRSVRVEPTVAELSCEEPPYLP------------------APG--EAPRLERQFRLLRHDLVASMREEIDAL 609
            +P +  LG E LS          ++E ++R+PGL    L G  T     D   V WFL  +     E                    R+   V++L ++LL   G A      L     G   T        AAV R G+  +LE   A   GGRHDNDH D+RS++++PT  E +C   PYLP                  AP   EA  L+R FRLLR DLV  +R+ +  L
Sbjct:   79 VPLLRLLGGEALSGSMA--PLLAVLEALFRVPGLLQ-CLDGAITAGKVADASPVGWFLLTLASQLEEV-------------------RQSPEVKQLADTLLARGGDAEKVARRLKVVLAGTAATGGPDWMHPAAVDREGL--ALEDLIAGP-GGRHDNDHVDYRSIKIQPTSDEATCPRMPYLPRSCEGEPEEGEIQVSDPHAPPDPEAALLDRHFRLLREDLVQPLRQALAVL 287          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A835Y7R3_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y7R3_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 4.830e-10
Identity = 67/228 (29.39%), Postives = 91/228 (39.91%), Query Frame = 1
Query:    1 LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAIDEHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESLLEATGQALPASSPGQNTTAAAAAVPRYGV------GRSLEAARAAVA------GGRHDNDHADFRSVRVEPTVAELSCEEPPYLP----------APGEAPR------LERQFRLLRHDLVASMREEI 600
            +P +  LG++QLS  TC      ++E ++R+PGL    ++     S   D   V W+L  +     E                    R  A V +L E L    G A   +   +   A AAA            G    A   A+       GGRHDNDH D+RS+ V PT  E  C   PYLP          AP  AP       L+R +RLLR D V  +R+ +
Sbjct:  559 VPLLRLLGSDQLSGSTCRAPLLQLLEALYRVPGLLG-CVEAAVKASAVADPAPVGWWLLVLASQVEEV-------------------RRSADVLRLAELLQSHGGDATKVAQQLKVVLAGAAAXXXXXXXXXXXXGSKTGAGGVALEDLLLGPGGRHDNDHVDYRSITVLPTSEEALCLRQPYLPRTAGGSDTEAAPAGAPSDPQAALLDRHYRLLREDFVLPLRQSL 766          
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Match: A0A8J4BBQ2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BBQ2_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 5.240e-9
Identity = 37/74 (50.00%), Postives = 43/74 (58.11%), Query Frame = 1
Query:  424 GGRHDNDHADFRSVRVEPTVAELSCEEPPYLPA--PGEAP---------RLERQFRLLRHDLVASMREEIDALR 612
            G RHDNDH DFR ++V PT  EL C E PYLP+  PG  P         RLE  FRLLRHD+VA +   +   R
Sbjct:  222 GCRHDNDHEDFRHIQVVPTCGELLCSEWPYLPSNRPGSMPHLTHDPQRARLEVNFRLLRHDVVAPLASALQKFR 295          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142203 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7F0_9STRA7.310e-140100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LJR0_ECTSI3.080e-3139.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSW9_9PHAE4.190e-3139.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U2HPZ1_9CHLO1.510e-1430.99Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A250WUI1_9CHLO4.750e-1431.84Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
C1EJH9_MICCC9.900e-1331.98Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A836BYK2_9CHLO1.700e-1131.22Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A150GQD9_GONPE1.870e-1031.20Helicase ATP-binding domain-containing protein n=1... [more]
A0A835Y7R3_9CHLO4.830e-1029.39Uncharacterized protein n=2 Tax=Edaphochlamys deba... [more]
A0A8J4BBQ2_9CHLO5.240e-950.00Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:314641..315255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142203|gw1.88.82.1
DescriptionNfx1-type zinc finger-containing protein
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0464@1|root,COG1112@1|root,KOG0730@2759|Eukaryota,KOG1807@2759|Eukaryota
Evalue5.05e-32
Seed ortholog2880.D8LJR0
Hectar predicted targeting categoryother localisation
TranscriptId142525
TrackFilteredModels1
ProteinId142203
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142203gene_11044Tribonema minus UTEX_B_3156 geneContig_88 314641..315255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11044_1exon_11044_1Tribonema minus UTEX_B_3156 exonContig_88 314641..315255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11044CDS_11044Tribonema minus UTEX_B_3156 CDSContig_88 314641..315255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142203Trimin1|142203|gw1.88.82.1Tribonema minus UTEX_B_3156 polypeptideContig_88 314641..315255 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11044 ID=mRNA_11044|Name=jgi.p|Trimin1|142203|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_88:314641..315255- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCCCTTCATCAGCTGGCTTGGGACGGAGCAGCTGTCTAGGGGGACCTG
TCATCACGCGCAGCAGACCATCATCGAAGGTGTGTGGCGGATTCCCGGTC
TCGCCAACAACCTCCTGCAGGGCCTGAACACCTGCTCCCCCGCCATCGAC
GAGCATGCGGTTGCCTGGTTCCTGGACCGTGTTGTCCATGCCGCCGGTGA
GCCTGGCAGCGAGGCCCGCAGTCACGAGGCCATGCGCGCTATGGCCAGGG
TCCTGGCCGAGCGCGAGGACGCAGCCGTCCGCAAGCTCGGCGAATCGCTG
CTGGAGGCCACAGGACAGGCGCTGCCAGCCTCCTCTCCAGGGCAGAACAC
GACAGCAGCGGCAGCAGCGGTGCCACGTTACGGCGTGGGGCGCTCGCTGG
AGGCCGCGCGTGCCGCCGTCGCCGGGGGCCGCCACGACAACGACCACGCC
GACTTCCGCTCCGTTCGCGTGGAGCCCACGGTGGCAGAGCTCAGCTGCGA
GGAGCCGCCATACCTACCCGCCCCCGGCGAGGCGCCGCGCCTGGAGCGCC
AGTTCCGCCTGCTGCGCCATGATCTCGTGGCGTCCATGCGCGAGGAGATC
GACGCGCTGCGGGCG
back to top

protein sequence of jgi.p|Trimin1|142203

>Trimin1|142203|gw1.88.82.1 ID=Trimin1|142203|gw1.88.82.1|Name=jgi.p|Trimin1|142203|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
LPFISWLGTEQLSRGTCHHAQQTIIEGVWRIPGLANNLLQGLNTCSPAID
EHAVAWFLDRVVHAAGEPGSEARSHEAMRAMARVLAEREDAAVRKLGESL
LEATGQALPASSPGQNTTAAAAAVPRYGVGRSLEAARAAVAGGRHDNDHA
DFRSVRVEPTVAELSCEEPPYLPAPGEAPRLERQFRLLRHDLVASMREEI
DALRA
back to top

mRNA from alignment at Contig_88:314641..315255-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11044 ID=mRNA_11044|Name=jgi.p|Trimin1|142203|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_88:314641..315255- (Tribonema minus UTEX_B_3156 )
CTGCCCTTCATCAGCTGGCTTGGGACGGAGCAGCTGTCTAGGGGGACCTG TCATCACGCGCAGCAGACCATCATCGAAGGTGTGTGGCGGATTCCCGGTC TCGCCAACAACCTCCTGCAGGGCCTGAACACCTGCTCCCCCGCCATCGAC GAGCATGCGGTTGCCTGGTTCCTGGACCGTGTTGTCCATGCCGCCGGTGA GCCTGGCAGCGAGGCCCGCAGTCACGAGGCCATGCGCGCTATGGCCAGGG TCCTGGCCGAGCGCGAGGACGCAGCCGTCCGCAAGCTCGGCGAATCGCTG CTGGAGGCCACAGGACAGGCGCTGCCAGCCTCCTCTCCAGGGCAGAACAC GACAGCAGCGGCAGCAGCGGTGCCACGTTACGGCGTGGGGCGCTCGCTGG AGGCCGCGCGTGCCGCCGTCGCCGGGGGCCGCCACGACAACGACCACGCC GACTTCCGCTCCGTTCGCGTGGAGCCCACGGTGGCAGAGCTCAGCTGCGA GGAGCCGCCATACCTACCCGCCCCCGGCGAGGCGCCGCGCCTGGAGCGCC AGTTCCGCCTGCTGCGCCATGATCTCGTGGCGTCCATGCGCGAGGAGATC GACGCGCTGCGGGCG
back to top

Coding sequence (CDS) from alignment at Contig_88:314641..315255-

>mRNA_11044 ID=mRNA_11044|Name=jgi.p|Trimin1|142203|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_88:314641..315255- (Tribonema minus UTEX_B_3156 )
CTGCCCTTCATCAGCTGGCTTGGGACGGAGCAGCTGTCTAGGGGGACCTG
TCATCACGCGCAGCAGACCATCATCGAAGGTGTGTGGCGGATTCCCGGTC
TCGCCAACAACCTCCTGCAGGGCCTGAACACCTGCTCCCCCGCCATCGAC
GAGCATGCGGTTGCCTGGTTCCTGGACCGTGTTGTCCATGCCGCCGGTGA
GCCTGGCAGCGAGGCCCGCAGTCACGAGGCCATGCGCGCTATGGCCAGGG
TCCTGGCCGAGCGCGAGGACGCAGCCGTCCGCAAGCTCGGCGAATCGCTG
CTGGAGGCCACAGGACAGGCGCTGCCAGCCTCCTCTCCAGGGCAGAACAC
GACAGCAGCGGCAGCAGCGGTGCCACGTTACGGCGTGGGGCGCTCGCTGG
AGGCCGCGCGTGCCGCCGTCGCCGGGGGCCGCCACGACAACGACCACGCC
GACTTCCGCTCCGTTCGCGTGGAGCCCACGGTGGCAGAGCTCAGCTGCGA
GGAGCCGCCATACCTACCCGCCCCCGGCGAGGCGCCGCGCCTGGAGCGCC
AGTTCCGCCTGCTGCGCCATGATCTCGTGGCGTCCATGCGCGAGGAGATC
GACGCGCTGCGGGCG
back to top