mRNA_11042 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131642
Unique NamemRNA_11042
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A836C8K0_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.730e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW
Sbjct:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 73
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BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A835Y7R3_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y7R3_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.180e-19
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVRVATIDNYQGEEAD+V+ SLVRS ASG +GFLS+  R+NV LSRAR+ +++IG+ D L + AK   AR  W
Sbjct: 1526 GVRVATIDNYQGEEADMVVASLVRSNASGGVGFLSEPERINVLLSRARQGMVLIGNSDTL-RNAKSPEARRHW 1597
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BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A836BYK2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYK2_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 5.560e-19
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVRVATIDNYQGEEADVV+ SLVRS ASG +GFL +  R+NV LSRAR  +I+IG+ + L + AK   AR+ W
Sbjct: 1303 GVRVATIDNYQGEEADVVVASLVRSNASGAVGFLREPERINVLLSRARHGMILIGNSETL-RSAKSPEARQHW 1374
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A699Y7G2_HAELA (NFX1-type zinc finger-containing protein 1 n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Y7G2_HAELA)

HSP 1 Score: 87.8 bits (216), Expect = 1.410e-18
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVRVATIDNYQGEE+D+VIVSLVRS ++G +GFL +  R+NV LSRAR  +I+IG+ D L + A   AA+  W
Sbjct:  430 GVRVATIDNYQGEESDIVIVSLVRSNSAGKVGFLKEPERINVLLSRARHGMILIGNADTL-RNASSSAAKSHW 501
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A699Z955_HAELA (AAA_12 domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z955_HAELA)

HSP 1 Score: 83.6 bits (205), Expect = 5.680e-18
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            G+R+ATIDNYQGEE+D+V+ SLVRS ++G +GFL +  R+NV LSRAR  +I+IG+ D L + A   AA+  W
Sbjct:  121 GLRLATIDNYQGEESDIVVASLVRSNSAGEVGFLKEPERINVLLSRARHGMILIGNADTL-RNASSSAAKSHW 192
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A2J8A739_9CHLO (NFX1-type zinc finger-containing protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A739_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 6.720e-18
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVRVATIDNYQGEEADVV+ SLVRS A+G++GFL +  R+NV LSRAR  +++IG+   L + AK   AR  W
Sbjct: 1146 GVRVATIDNYQGEEADVVVASLVRSNAAGSVGFLREPERINVLLSRARHGMLLIGNAATL-RSAKSQEARRHW 1217
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A150GQD9_GONPE (Helicase ATP-binding domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GQD9_GONPE)

HSP 1 Score: 85.5 bits (210), Expect = 9.140e-18
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVR+ATIDNYQGEEADVVI SLVRS  SG++GFL +  R+NV LSRAR  +I+IG+   L + AK   AR  W
Sbjct: 1096 GVRIATIDNYQGEEADVVIASLVRSNDSGSVGFLREPERINVLLSRARHGMILIGNAATL-RNAKSPEARRHW 1167
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A150GQH9_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GQH9_GONPE)

HSP 1 Score: 85.5 bits (210), Expect = 9.170e-18
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVRVATIDNYQGEEADVV+ SLVRS  SG++GFL +  R+NV LSRAR  +I+IG+   L + AK   AR  W
Sbjct:  910 GVRVATIDNYQGEEADVVVASLVRSNDSGSVGFLREPERINVLLSRARHGMILIGNAATL-RNAKSPEARRHW 981
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A6H5JSW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 9.180e-18
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    4 VRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDF 177
            VRVAT+DNYQGEE+DV+I S VRS + G MGF+ D NRLNVA+SRAR  +I+ GD+DF
Sbjct: 1151 VRVATVDNYQGEESDVIISSFVRSNSGGQMGFVGDPNRLNVAISRARHGMIMFGDIDF 1208
[Close]
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Match: A0A699ZGW1_HAELA (AAA_12 domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZGW1_HAELA)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-17
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRALIVIGDLDFLTQRAKGDAAREPW 219
            GVR+ATIDNYQGEE+D+V+ SLVRS ++G +GFL +  R+NV LSRAR  +I+IG+ D L + A   AA+  W
Sbjct:   18 GVRLATIDNYQGEESDIVVASLVRSNSAGKVGFLKEPERINVLLSRARYGMILIGNADTL-RNASSSAAKSHW 89
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131642 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8K0_9STRA3.730e-43100.00AAA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Y7R3_9CHLO2.180e-1963.01Uncharacterized protein n=2 Tax=Edaphochlamys deba... [more]
A0A836BYK2_9CHLO5.560e-1963.01Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A699Y7G2_HAELA1.410e-1860.27NFX1-type zinc finger-containing protein 1 n=1 Tax... [more]
A0A699Z955_HAELA5.680e-1854.79AAA_12 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2J8A739_9CHLO6.720e-1860.27NFX1-type zinc finger-containing protein 1 n=1 Tax... [more]
A0A150GQD9_GONPE9.140e-1861.64Helicase ATP-binding domain-containing protein n=1... [more]
A0A150GQH9_GONPE9.170e-1861.64Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A6H5JSW9_9PHAE9.180e-1867.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A699ZGW1_HAELA1.340e-1756.16AAA_12 domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:305212..305723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131642|gw1.88.19.1
DescriptionAAA domain
COG categoryLO
Max annot lvl4751|Fungi
EggNOG OGsCOG0464@1|root,COG1112@1|root,KOG0730@2759|Eukaryota,KOG1807@2759|Eukaryota,38E0G@33154|Opisthokonta,3NXD2@4751|Fungi,3QNIT@4890|Ascomycota,212HW@147550|Sordariomycetes,3U68E@5139|Sordariales
Evalue3.83e-18
Seed ortholog5145.XP_001903472.1
Hectar predicted targeting categoryother localisation
TranscriptId131964
TrackFilteredModels1
ProteinId131642
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131642gene_11042Tribonema minus UTEX_B_3156 geneContig_88 305212..305723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131642Trimin1|131642|gw1.88.19.1Tribonema minus UTEX_B_3156 polypeptideContig_88 305212..305723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11042_2exon_11042_2Tribonema minus UTEX_B_3156 exonContig_88 305212..305391 -
exon_11042_1exon_11042_1Tribonema minus UTEX_B_3156 exonContig_88 305685..305723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11042CDS_11042Tribonema minus UTEX_B_3156 CDSContig_88 305685..305723 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11042 ID=mRNA_11042|Name=jgi.p|Trimin1|131642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_88:305212..305723- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTGTTCGCGTGGCTACCATCGACAACTATCAGGGCGAGGAAGCCGACGT
CGTCATCGTCTCGCTCGTGCGCAGCCGCGCGAGCGGCACCATGGGCTTCC
TGAGCGACGCCAACCGCCTAAACGTGGCGCTCTCGCGCGCACGCCGCGCA
CTGATCGTCATCGGCGACCTCGACTTCCTCACGCAGCGCGCAAAGGGCGA
CGCGGCGCGCGAGCCGTGG
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protein sequence of jgi.p|Trimin1|131642

>Trimin1|131642|gw1.88.19.1 ID=Trimin1|131642|gw1.88.19.1|Name=jgi.p|Trimin1|131642|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp
GVRVATIDNYQGEEADVVIVSLVRSRASGTMGFLSDANRLNVALSRARRA
LIVIGDLDFLTQRAKGDAAREPW
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mRNA from alignment at Contig_88:305212..305723-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11042 ID=mRNA_11042|Name=jgi.p|Trimin1|131642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=512bp|location=Sequence derived from alignment at Contig_88:305212..305723- (Tribonema minus UTEX_B_3156 )
GGTGTTCGCGTGGCTACCATCGACAACTATCAGGGCGAGGTGAGGTTGGA
TTTCTTCATTTTGTTGCAGTACCTTGAGTCCTATCGTCGGTTTTGCACTG
ACTCCAGTCATGGTGAGCCTAACCTGCTGAAGCCTGAGACTTGACAACAG
CCTCCAGTAGGTTCATGGCAGTGACACCCCTACAGGCAAGGCATAGGGCT
CAGATGCTTGGCGATCACCTTTCCCCCCACACTGTTGACCATGCAGGACG
CTCCCTGAGTCTCTGAAGTGACACCTCACGACAACCATGCCCCTCCCCCC
CTCCCCCCCTTTCCCCTCCGCCGCACTGGCAGGAAGCCGACGTCGTCATC
GTCTCGCTCGTGCGCAGCCGCGCGAGCGGCACCATGGGCTTCCTGAGCGA
CGCCAACCGCCTAAACGTGGCGCTCTCGCGCGCACGCCGCGCACTGATCG
TCATCGGCGACCTCGACTTCCTCACGCAGCGCGCAAAGGGCGACGCGGCG
CGCGAGCCGTGG
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Coding sequence (CDS) from alignment at Contig_88:305212..305723-

>mRNA_11042 ID=mRNA_11042|Name=jgi.p|Trimin1|131642|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_88:305212..305723- (Tribonema minus UTEX_B_3156 )
GGTGTTCGCGTGGCTACCATCGACAACTATCAGGGCGAGGAAGCCGACGT
CGTCATCGTCTCGCTCGTGCGCAGCCGCGCGAGCGGCACCATGGGCTTCC
TGAGCGACGCCAACCGCCTAAACGTGGCGCTCTCGCGCGCACGCCGCGCA
CTGATCGTCATCGGCGACCTCGACTTCCTCACGCAGCGCGCAAAGGGCGA
CGCGGCGCGCGAGCCGTGG
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