mRNA_11030 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172060
Unique NamemRNA_11030
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A836C8Y9_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y9_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.870e-88
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 MWAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALIALLKY 378
            MWAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALIALLKY
Sbjct:    1 MWAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALIALLKY 126
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A835YUL8_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.760e-24
Identity = 58/118 (49.15%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 MWAYDVGNGCN---TDF----GCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQ 333
            +W   VGNGC    TD      CG+GN ELQSY AAN +++GG L L A      LA+ +  +SG+V S AP T  +G VEA IT+  G+G W SFFLLP    YG WP SGEID+++
Sbjct:  220 IWTPYVGNGCEQKATDGTLAPNCGFGNGELQSYEAANVYVQGGSLYLNAELLAKPLANTAQIASGKVTSNAPYTAKFGRVEALITLPFGIGLWPSFFLLPVNETYGPWPASGEIDILE 337
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: UPI001CC0166A (glycoside hydrolase family 16 protein n=1 Tax=Sutcliffiella deserti TaxID=2875501 RepID=UPI001CC0166A)

HSP 1 Score: 100 bits (249), Expect = 4.120e-22
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:    4 WAYDVGNGCNTDFGC---GWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGS-SFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVP 354
            W+YD+GNG   + G    GWGN+ELQSY+  N  +E GQL+LE   E      G+ +++SG++H+    +  YG  EAKI +  G G W +F+++PE++VYG W  SGEID+++  S G P
Sbjct:   57 WSYDIGNGFTDNNGTYISGWGNEELQSYQEDNIRVENGQLILEGREETVFDEHGTYNYTSGKIHTKGKFSQRYGKFEAKIALPEGQGYWPAFWMMPEDDVYGGWAASGEIDIMEN-SGGTP 176
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A2G0CJL8_9BACT (GH16 domain-containing protein n=1 Tax=Lewinella marina TaxID=438751 RepID=A0A2G0CJL8_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 7.370e-22
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    4 WAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALIALLKY 378
            W Y +G+GC+    CGWGN ELQSY+  N  +  G+L + A  +      GS ++SGR+++   A   YG  EA I +  G G W +F++LP + VYG WP SGEID+++ V++     +  + Y
Sbjct:   48 WNYQIGDGCDLGI-CGWGNNELQSYQQDNVVVSNGKLQITARKQR---VRGSQYTSGRINTKGKADFAYGRFEASIKLPYGDGLWPAFWMLPTDEVYGGWPQSGEIDIMEFVASNPGQTLGYIHY 168
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A4S4NJP9_9BACT (Glycosyl hydrolase family protein n=1 Tax=Lewinella litorea TaxID=2562452 RepID=A0A4S4NJP9_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 7.370e-22
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    4 WAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALIALLKY 378
            W Y +G+GC+    CGWGN ELQSY+  N  +  GQL + A  E      GS ++SGR+++   A   YG  EA I +  G G W +F++L  + VYG WP SGEID+++ V++     +  + Y
Sbjct:   48 WNYQIGDGCDIGI-CGWGNNELQSYQQGNVAVSNGQLQITARKER---TRGSQYTSGRINTKGKADFTYGRFEASIKLPYGDGLWPAFWMLSTDEVYGGWPQSGEIDIMEFVASNPGQTLGYIHY 168
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A511X091_9BACI (GH16 domain-containing protein n=1 Tax=Halolactibacillus alkaliphilus TaxID=442899 RepID=A0A511X091_9BACI)

HSP 1 Score: 99.4 bits (246), Expect = 1.050e-21
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:    4 WAYDVGNGCNTDFGC---GWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGS-SFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALI 363
            W+YD+GNG   + G    GWGN+ELQSY+  N  +E G+L+LEA  E      G+ +++SG++H+       YG  EAK+++  G G W +F+++PEE++YG W  SGEID+++    G P  I
Sbjct:   51 WSYDIGNGFYQEDGSFISGWGNEELQSYQKENVRVEDGKLILEAREEEVSDDQGTYNYTSGKIHTKGKFKQTYGRFEAKMSLPEGQGFWPAFWMMPEEDIYGGWAASGEIDIMENAG-GTPTKI 173
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A1I6TX64_9BACI (Beta-glucanase, GH16 family n=1 Tax=Halolactibacillus miurensis TaxID=306541 RepID=A0A1I6TX64_9BACI)

HSP 1 Score: 99.0 bits (245), Expect = 1.430e-21
Identity = 48/117 (41.03%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:    1 MWAYDVGNGCNTDFGC---GWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGS---SFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQ 333
            +W+YD+GNG     G    GWGN+ELQSY+  N  +E GQL++EA  +  V+ DG    +++SG++H+    +  YG  EA++++  G G W +F+++PE++VYG W  SGEID+++
Sbjct:   50 IWSYDIGNGFYEPDGTFVPGWGNQELQSYQEDNVRVENGQLIIEAKKQ--VVEDGEGTYNYTSGKIHTKGNFSQTYGRFEARMSLPEGQGFWPAFWMMPEDDVYGAWAASGEIDIME 164
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: UPI001C1F3232 (carbohydrate binding domain-containing protein n=1 Tax=Alkalihalobacterium elongatum TaxID=2675466 RepID=UPI001C1F3232)

HSP 1 Score: 98.6 bits (244), Expect = 1.960e-21
Identity = 48/115 (41.74%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    4 WAYDVGNGC--NTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSS---FSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQ 333
            W+YD+GNG   N  F  GWGN+ELQSY+  N  +E GQL+++A  E   ++D +    ++SG++H+    +  YG  EAK+ + +G G W +F+++PE++VYG W  SGEID+++
Sbjct:   58 WSYDIGNGFYDNGTFIPGWGNEELQSYQEDNVRVENGQLIIQAKEE--TVSDDTGTYHYTSGKIHTQGKFSQKYGRFEAKMALPAGQGYWPAFWMMPEDDVYGGWAASGEIDIME 170
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: A0A1M5YU54_9GAMM (Beta-glucanase, GH16 family n=2 Tax=Ferrimonas marina TaxID=299255 RepID=A0A1M5YU54_9GAMM)

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-21
Identity = 47/114 (41.23%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:    4 WAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAV-SEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVS 342
            W+Y +G+GC+ +  CGWGN ELQ YRA N  +  G L + A+ S+ P +     ++SGR+ S+  A   YG +EA+I + +G G W +F++LP +  YG W  SGEID+++ V+
Sbjct:   52 WSYQLGDGCDINL-CGWGNNELQHYRADNVTVADGLLTITALPSDEPDVP----YTSGRIRSLNKADFRYGRIEARIKLPAGQGLWPAFWMLPTDEQYGGWAASGEIDIMEAVN 160
[Close]
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Match: M7NQ41_9BACT (Beta-glucanase n=1 Tax=Cesiribacter andamanensis AMV16 TaxID=1279009 RepID=M7NQ41_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 4.720e-21
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    4 WAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLADGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGDWPGSGEIDVVQMVSTGVPALIALLKY 378
            W Y +G+GC     CGWGN ELQSY+ AN  +  G L + A  E      G++++SGR+++       YG +EA+I + +G G W +F++LP   VYG WP SGEID+++ V      ++  + Y
Sbjct:   40 WNYQIGDGCAEGI-CGWGNNELQSYQQANVTVANGLLKITAKRER---IRGANYTSGRINTKGKGDWTYGRMEARIKLPAGGGLWPAFWMLPTNEVYGGWPKSGEIDIMEFVGHHPQEVLGTIHY 160
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172060 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8Y9_9STRA1.870e-88100.00Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A835YUL8_9STRA2.760e-2449.15Concanavalin A-like lectin/glucanase domain-contai... [more]
UPI001CC0166A4.120e-2242.98glycoside hydrolase family 16 protein n=1 Tax=Sutc... [more]
A0A2G0CJL8_9BACT7.370e-2238.40GH16 domain-containing protein n=1 Tax=Lewinella m... [more]
A0A4S4NJP9_9BACT7.370e-2239.20Glycosyl hydrolase family protein n=1 Tax=Lewinell... [more]
A0A511X091_9BACI1.050e-2141.13GH16 domain-containing protein n=1 Tax=Halolactiba... [more]
A0A1I6TX64_9BACI1.430e-2141.03Beta-glucanase, GH16 family n=1 Tax=Halolactibacil... [more]
UPI001C1F32321.960e-2141.74carbohydrate binding domain-containing protein n=1... [more]
A0A1M5YU54_9GAMM2.800e-2141.23Beta-glucanase, GH16 family n=2 Tax=Ferrimonas mar... [more]
M7NQ41_9BACT4.720e-2138.40Beta-glucanase n=1 Tax=Cesiribacter andamanensis A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:213508..214446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172060|e_gw1.88.78.1
Descriptionglycoside hydrolase, family
COG categoryG
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG2273@1|root,COG3979@1|root,COG2273@2|Bacteria,COG3979@2|Bacteria,4NKMT@976|Bacteroidetes
Evalue7.74e-22
Seed ortholog1279009.ADICEAN_01073
Hectar predicted targeting categoryother localisation
TranscriptId172382
TrackFilteredModels1
ProteinId172060
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172060gene_11030Tribonema minus UTEX_B_3156 geneContig_88 213508..214446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172060Trimin1|172060|e_gw1.88.78.1Tribonema minus UTEX_B_3156 polypeptideContig_88 213508..214446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11030_2exon_11030_2Tribonema minus UTEX_B_3156 exonContig_88 213508..213813 -
exon_11030_1exon_11030_1Tribonema minus UTEX_B_3156 exonContig_88 214372..214446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11030CDS_11030Tribonema minus UTEX_B_3156 CDSContig_88 214372..214446 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11030 ID=mRNA_11030|Name=jgi.p|Trimin1|172060|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_88:213508..214446- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGCCTACGATGTGGGCAATGGCTGCAATACGGACTTTGGTTGCGG
CTGGGGCAACAAGGAACTGCAGTCGTACCGCGCAGCAAACGCATTTCTGG
AGGGCGGTCAGCTGGTACTGGAAGCCGTTTCCGAGTACCCCGTTCTAGCA
GATGGCAGCAGTTTCTCATCAGGCCGCGTACACTCCATTGCACCTGCGAC
CGTCTTGTACGGGCTGGTGGAAGCGAAGATTACTATAGGCAGCGGGGTGG
GGCCCTGGGGATCCTTCTTCCTGCTGCCAGAGGAGAATGTGTACGGGGAC
TGGCCTGGCTCGGGGGAGATTGATGTCGTGCAGATGGTGAGCACTGGCGT
GCCCGCACTCATCGCTTTACTGAAGTACTGA
back to top

protein sequence of jgi.p|Trimin1|172060

>Trimin1|172060|e_gw1.88.78.1 ID=Trimin1|172060|e_gw1.88.78.1|Name=jgi.p|Trimin1|172060|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
MWAYDVGNGCNTDFGCGWGNKELQSYRAANAFLEGGQLVLEAVSEYPVLA
DGSSFSSGRVHSIAPATVLYGLVEAKITIGSGVGPWGSFFLLPEENVYGD
WPGSGEIDVVQMVSTGVPALIALLKY*
back to top

mRNA from alignment at Contig_88:213508..214446-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11030 ID=mRNA_11030|Name=jgi.p|Trimin1|172060|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=939bp|location=Sequence derived from alignment at Contig_88:213508..214446- (Tribonema minus UTEX_B_3156 )
ATGTGGGCCTACGATGTGGGCAATGGCTGCAATACGGACTTTGGTTGCGG
CTGGGGCAACAAGGAACTGCAGTCGGTAAGACGCACTGCAACCACGTATG
ATGGCAGCTCAAAGGCAACCCTTTCAACCGCACTACTGTAGGCGTTGGTC
AGTCGTTGGCAGTCACGGGAACAGCAGCGCACACTACTACCTCAGGCTGC
AGGTGTTCGTTCTGGCCCTACCATACAAAGGGGTTCTGCCTGCAAGACTG
ATACGGACTTGCCACCACCTCACCTTTACTAGTGCTCTGTCAGTATGATG
TAGCAAATATATTCTGCTACTCCAAAAAATTCCATGTCTGCACACGTGTC
TGCATGTGCTGCTGCTGCTGCCAGCACTGGCAGCTGCTTCATTCCTGCAA
GGGCGGCAAGCCTGTGCTGGCAGCAATAGCCTTGCCAGCTTTGCGTACCC
GTTCTGCCGGTCAGCAGCAGCTAATCAACAGGATACATGCACTCTAGGCC
TATGATGTATGCAGTCCGTCATACCATTCGATGTTGTGCCTTTTACTTGC
AGCCGACTACTGTAACAAGTGCTTCCACAATACAACACACATTTTTCCTA
CTCTGCTTGCGTGTGCCACTGCTGCTCCGCCAGTACCGCGCAGCAAACGC
ATTTCTGGAGGGCGGTCAGCTGGTACTGGAAGCCGTTTCCGAGTACCCCG
TTCTAGCAGATGGCAGCAGTTTCTCATCAGGCCGCGTACACTCCATTGCA
CCTGCGACCGTCTTGTACGGGCTGGTGGAAGCGAAGATTACTATAGGCAG
CGGGGTGGGGCCCTGGGGATCCTTCTTCCTGCTGCCAGAGGAGAATGTGT
ACGGGGACTGGCCTGGCTCGGGGGAGATTGATGTCGTGCAGATGGTGAGC
ACTGGCGTGCCCGCACTCATCGCTTTACTGAAGTACTGA
back to top

Coding sequence (CDS) from alignment at Contig_88:213508..214446-

>mRNA_11030 ID=mRNA_11030|Name=jgi.p|Trimin1|172060|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_88:213508..214446- (Tribonema minus UTEX_B_3156 )
ATGTGGGCCTACGATGTGGGCAATGGCTGCAATACGGACTTTGGTTGCGG
CTGGGGCAACAAGGAACTGCAGTCGTACCGCGCAGCAAACGCATTTCTGG
AGGGCGGTCAGCTGGTACTGGAAGCCGTTTCCGAGTACCCCGTTCTAGCA
GATGGCAGCAGTTTCTCATCAGGCCGCGTACACTCCATTGCACCTGCGAC
CGTCTTGTACGGGCTGGTGGAAGCGAAGATTACTATAGGCAGCGGGGTGG
GGCCCTGGGGATCCTTCTTCCTGCTGCCAGAGGAGAATGTGTACGGGGAC
TGGCCTGGCTCGGGGGAGATTGATGTCGTGCAGATGGTGAGCACTGGCGT
GCCCGCACTCATCGCTTTACTGAAGTACTGA
back to top