mRNA_11021 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|337240
Unique NamemRNA_11021
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|337240 vs. uniprot
Match: A0A835YI68_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI68_9STRA)

HSP 1 Score: 773 bits (1995), Expect = 2.000e-281
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 2 
Query:   71 MPFVCACGIQQGDGASVDGVVATLVCISCCKGGSDRAPKVNRRAALELVSASALDRLGYQKNRNRKKTKALHLRLYLKAEVTALALHAQNVKKAMAEERQRQLSFSIEEVPASLRDYVLEDFLHHVKRPKTSNRRVEQRHKAARLATQAALILYKGPIVPLANFCLERPLLKQPAVVASRVSLHSDLRDSALPREGVRIATFLATMHRQMACISIPALEAALDAALANRKESLRVEVIRSGGGAEWVDDPACERRLERFMTHMHIDAAETAAKIVAFHRTRGDAAARRALLQTAMDRRRVALCSDSKFCASFINGTVDVDPEEVAAIADITARIFLKGGHILYSHCSKMPERACLREVYEFGKSWDQGVLAAMHVAGSYRADAARDYDRYGYDRYDRW 1264
            MPFVCACGIQQGDGASVDGVVATLVCISCCKGGSDRAPKVNRRAALELVSASALDRLGYQKNRNRKKTKALHLRLYLKAEVTALALHAQNVKKAMAEERQRQLSFSIEEVPASLRDYVLEDFLHHVKRPKTSNRRVEQRHKAARLATQAALILYKGPIVPLANFCLERPLLKQPAVVASRVSLHSDLRDSALPREGVRIATFLATMHRQMACISIPALEAALDAALANRKESLRVEVIRSGGGAEWVDDPACERRLERFMTHMHIDAAETAAKIVAFHRTRGDAAARRALLQTAMDRRRVALCSDSKFCASFINGTVDVDPEEVAAIADITARIFLKGGHILYSHCSKMPERACLREVYEFGKSWDQGVLAAMHVAGSYRADAARDYDRYGYDRYDRW
Sbjct:    1 MPFVCACGIQQGDGASVDGVVATLVCISCCKGGSDRAPKVNRRAALELVSASALDRLGYQKNRNRKKTKALHLRLYLKAEVTALALHAQNVKKAMAEERQRQLSFSIEEVPASLRDYVLEDFLHHVKRPKTSNRRVEQRHKAARLATQAALILYKGPIVPLANFCLERPLLKQPAVVASRVSLHSDLRDSALPREGVRIATFLATMHRQMACISIPALEAALDAALANRKESLRVEVIRSGGGAEWVDDPACERRLERFMTHMHIDAAETAAKIVAFHRTRGDAAARRALLQTAMDRRRVALCSDSKFCASFINGTVDVDPEEVAAIADITARIFLKGGHILYSHCSKMPERACLREVYEFGKSWDQGVLAAMHVAGSYRADAARDYDRYGYDRYDRW 398
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BLAST of jgi.p|Trimin1|337240 vs. uniprot
Match: A0A835Z0N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N9_9STRA)

HSP 1 Score: 438 bits (1127), Expect = 2.580e-149
Identity = 243/405 (60.00%), Postives = 288/405 (71.11%), Query Frame = 2 
Query:   71 MPFVCACGIQQGDGASVDGVVATLVCISCCKGGSDRAPKVNRRAALELVSASALDRLGYQKNRNRKKTKALHLRLYLKAEVTAL-------ALHAQNVKKAMAEERQRQLSFSIEEVPASLRDYVLEDFLHHVKRPKTSNRRVEQRHKAARLATQAALILYKGPIVPLANFCLERPLLKQPAVVASRVSLHSDLRDSALPREGVRIATFLATMHRQMACISIPALEAALDAALANRKESLRVEVIRSGGGAEWVDDPACERRLERFMTHMHIDAAETAAKIVAFHRTRGDAAARRALLQTAMDRRRVALCSDSKFCASFINGTVDVDPEEVAAIADITARIFLKGGHILYSHCSKMPERACLREVYEFGKSWDQGVLAAMHVAGSYRADAARDYDRYGYDRYDRW 1264
            MPF CACG ++ DG SVDG+  T+ C SCCK G D+A K+ R AAL LVS SALDRL  +   N     A  +RLYL+AEV AL       A   Q+ K A+ EER+R+LSFS+ +VP SL+DYV EDFL  VKRPK S RRVEQR K  RLAT+AAL+L+KGPI  +A+ CL RP LK PA VA+ VSLHS+LRD+A+ RE VRIATFL T  +Q AC  +P L+A LDAALA+RK++L   V  SGG AEWVDDPAC RR++RFM H+ IDAAETAAKIVAFHRTRGDA ARRALLQ AMD++ + +  DS FCASFI+G VDVDPEEVAAI DITA +F   GH+ YS CS   E ACL EV+E GKSWD GV +AM VA       + +YD    D Y  W
Sbjct:    1 MPFGCACGNEEEDGVSVDGIRDTVACASCCKPGDDKAQKLTRTAALRLVSTSALDRLCCETKTNPMYRSAAPMRLYLEAEVMALRHVEAEAAQEKQHAKDAIVEERKRKLSFSVNDVPPSLQDYVFEDFLRPVKRPKASKRRVEQRQKLVRLATEAALLLHKGPIAQIADTCLSRPALKTPADVAAFVSLHSELRDAAVARECVRIATFLTTADKQKACRIVPGLKAGLDAALAHRKDALIRGVCSSGGSAEWVDDPACARRVKRFMRHIRIDAAETAAKIVAFHRTRGDAVARRALLQAAMDKQHLEIRDDSDFCASFISGDVDVDPEEVAAIMDITAYLFDSWGHVAYSKCSLQAEAACLHEVFECGKSWDSGVQSAMDVADELMERVSVEYDN---DDYAYW 402
[Close]
BLAST of jgi.p|Trimin1|337240 vs. uniprot
Match: A0A835YPL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL1_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.480e-87
Identity = 159/252 (63.10%), Postives = 185/252 (73.41%), Query Frame = 2 
Query:  287 LRLYLKAEVTAL----ALHAQNVKKAMAEERQRQLSFSIEEVPASLRDYVLEDFLHHVKRPKTSNRRVEQRHKAARLATQAALILYKGPIVPLANFCLERPLLKQPAVVASRVSLHSDLRDSALPREGVRIATFLATMHRQMACISIPALEAALDAALANRKESLRVEVIRSGGGAEWVDDPACERRLERFMTHMHIDAAETAAKIVAFHRTRGDAAARRALLQTAMDRRRVALCSDSKFCASFINGTVDVD 1030
            +RLYL+AEV AL    A  AQ  K A+ EER+RQL+FS+++VP SL DYV EDFL  VK PK S R VEQR K  RLAT+AAL+L+K P   LA+ CL  P LK PA VA+ VSLHS+LR +A+  E VRIATFL    +  AC  IP L+A LDAALA+RKE+L   V  SGG AEW+DDPAC RR++RFM H HID  ETAAKI AFHRTRGDAAARRALLQTAMD RR  +  DS FCASFI+G VDV+
Sbjct:    1 MRLYLEAEVMALRHVDAEAAQQAKHAIVEERKRQLAFSVDDVPPSLWDYVFEDFLRPVKHPKASKRMVEQRQKVVRLATEAALLLHKDPS-QLADICLSGPALKTPADVAAFVSLHSELRGAAIALECVRIATFLTAADKPKACKIIPELKAGLDAALAHRKEALIRGVCSSGGSAEWIDDPACARRVKRFMQHTHIDTTETAAKIAAFHRTRGDAAARRALLQTAMDTRRQRIRDDSDFCASFISGAVDVE 251
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|337240 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YI68_9STRA2.000e-281100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0N9_9STRA2.580e-14960.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPL1_9STRA1.480e-8763.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:93581..94847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|337240|MIX46003_8_44
Hectar predicted targeting categoryother localisation
TranscriptId337562
TrackFilteredModels1
ProteinId337240
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337240gene_11021Tribonema minus UTEX_B_3156 geneContig_88 93581..94847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11021_1exon_11021_1Tribonema minus UTEX_B_3156 exonContig_88 93581..94847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11021CDS_11021Tribonema minus UTEX_B_3156 CDSContig_88 93581..94777 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11021UTR5_11021Tribonema minus UTEX_B_3156 five_prime_UTRContig_88 94778..94847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337240Trimin1|337240|MIX46003_8_44Tribonema minus UTEX_B_3156 polypeptideContig_88 93581..94777 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11021 ID=mRNA_11021|Name=jgi.p|Trimin1|337240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1267bp|location=Sequence derived from alignment at Contig_88:93581..94847- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCGCACCCGCGAGCGAGGAAATATACGTGTATCTGCTGAGAGCGT
CGCTCGCTCAGCTACATGACATGCCGTTCGTGTGCGCTTGTGGTATCCAG
CAGGGAGACGGAGCATCAGTCGATGGAGTTGTAGCTACGTTGGTGTGCAT
TTCGTGCTGCAAGGGAGGCAGCGATCGCGCGCCGAAGGTGAACCGGCGCG
CTGCGCTTGAGCTGGTGTCAGCTTCAGCTCTCGACCGGCTTGGCTATCAG
AAGAATCGAAACCGTAAAAAAACGAAGGCTTTACATCTGCGGCTGTACTT
GAAGGCGGAGGTCACGGCACTAGCACTCCATGCGCAAAATGTCAAGAAAG
CCATGGCCGAGGAGCGCCAGCGGCAGCTCTCATTCTCCATCGAAGAGGTC
CCTGCATCTCTGCGGGACTACGTGCTCGAGGACTTCCTGCACCACGTGAA
GCGCCCCAAGACTTCAAACAGGAGGGTGGAGCAGCGCCACAAGGCTGCTC
GACTGGCGACGCAGGCGGCGCTCATCTTGTACAAGGGCCCCATAGTTCCC
CTGGCGAACTTCTGCCTGGAAAGGCCCCTGTTGAAGCAGCCTGCAGTTGT
CGCGTCACGTGTCTCGCTTCACTCGGATCTGCGCGACTCCGCCCTTCCAC
GCGAGGGCGTGCGCATCGCGACATTCCTCGCCACGATGCACAGGCAAATG
GCATGCATCAGCATCCCTGCACTGGAGGCGGCGCTCGACGCAGCTCTGGC
GAACCGCAAAGAGTCTCTCAGGGTCGAGGTGATCCGCAGCGGCGGCGGCG
CGGAGTGGGTCGATGACCCGGCCTGCGAGCGCCGGCTGGAGCGGTTCATG
ACACACATGCACATCGACGCTGCGGAAACAGCTGCGAAGATTGTTGCGTT
CCACCGCACGCGCGGGGACGCCGCCGCGCGCAGAGCGCTGCTGCAGACGG
CCATGGACAGGAGGCGGGTGGCGCTGTGCAGCGACTCCAAATTCTGCGCG
TCCTTCATCAATGGAACCGTTGATGTGGACCCGGAGGAGGTGGCTGCCAT
CGCGGACATCACAGCCCGTATATTTTTGAAGGGGGGGCACATTCTGTATT
CCCACTGCTCAAAGATGCCGGAGAGGGCGTGCCTGCGAGAGGTGTATGAG
TTTGGGAAGAGCTGGGATCAGGGCGTTCTGGCTGCAATGCACGTGGCAGG
CAGCTACAGGGCAGATGCGGCCAGGGACTATGACAGGTATGGTTATGACA
GATATGATCGCTGGTGA
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protein sequence of jgi.p|Trimin1|337240

>Trimin1|337240|MIX46003_8_44 ID=Trimin1|337240|MIX46003_8_44|Name=jgi.p|Trimin1|337240|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=399bp
MPFVCACGIQQGDGASVDGVVATLVCISCCKGGSDRAPKVNRRAALELVS
ASALDRLGYQKNRNRKKTKALHLRLYLKAEVTALALHAQNVKKAMAEERQ
RQLSFSIEEVPASLRDYVLEDFLHHVKRPKTSNRRVEQRHKAARLATQAA
LILYKGPIVPLANFCLERPLLKQPAVVASRVSLHSDLRDSALPREGVRIA
TFLATMHRQMACISIPALEAALDAALANRKESLRVEVIRSGGGAEWVDDP
ACERRLERFMTHMHIDAAETAAKIVAFHRTRGDAAARRALLQTAMDRRRV
ALCSDSKFCASFINGTVDVDPEEVAAIADITARIFLKGGHILYSHCSKMP
ERACLREVYEFGKSWDQGVLAAMHVAGSYRADAARDYDRYGYDRYDRW*
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mRNA from alignment at Contig_88:93581..94847-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11021 ID=mRNA_11021|Name=jgi.p|Trimin1|337240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1267bp|location=Sequence derived from alignment at Contig_88:93581..94847- (Tribonema minus UTEX_B_3156 )
CAGCAGCGCACCCGCGAGCGAGGAAATATACGTGTATCTGCTGAGAGCGT
CGCTCGCTCAGCTACATGACATGCCGTTCGTGTGCGCTTGTGGTATCCAG
CAGGGAGACGGAGCATCAGTCGATGGAGTTGTAGCTACGTTGGTGTGCAT
TTCGTGCTGCAAGGGAGGCAGCGATCGCGCGCCGAAGGTGAACCGGCGCG
CTGCGCTTGAGCTGGTGTCAGCTTCAGCTCTCGACCGGCTTGGCTATCAG
AAGAATCGAAACCGTAAAAAAACGAAGGCTTTACATCTGCGGCTGTACTT
GAAGGCGGAGGTCACGGCACTAGCACTCCATGCGCAAAATGTCAAGAAAG
CCATGGCCGAGGAGCGCCAGCGGCAGCTCTCATTCTCCATCGAAGAGGTC
CCTGCATCTCTGCGGGACTACGTGCTCGAGGACTTCCTGCACCACGTGAA
GCGCCCCAAGACTTCAAACAGGAGGGTGGAGCAGCGCCACAAGGCTGCTC
GACTGGCGACGCAGGCGGCGCTCATCTTGTACAAGGGCCCCATAGTTCCC
CTGGCGAACTTCTGCCTGGAAAGGCCCCTGTTGAAGCAGCCTGCAGTTGT
CGCGTCACGTGTCTCGCTTCACTCGGATCTGCGCGACTCCGCCCTTCCAC
GCGAGGGCGTGCGCATCGCGACATTCCTCGCCACGATGCACAGGCAAATG
GCATGCATCAGCATCCCTGCACTGGAGGCGGCGCTCGACGCAGCTCTGGC
GAACCGCAAAGAGTCTCTCAGGGTCGAGGTGATCCGCAGCGGCGGCGGCG
CGGAGTGGGTCGATGACCCGGCCTGCGAGCGCCGGCTGGAGCGGTTCATG
ACACACATGCACATCGACGCTGCGGAAACAGCTGCGAAGATTGTTGCGTT
CCACCGCACGCGCGGGGACGCCGCCGCGCGCAGAGCGCTGCTGCAGACGG
CCATGGACAGGAGGCGGGTGGCGCTGTGCAGCGACTCCAAATTCTGCGCG
TCCTTCATCAATGGAACCGTTGATGTGGACCCGGAGGAGGTGGCTGCCAT
CGCGGACATCACAGCCCGTATATTTTTGAAGGGGGGGCACATTCTGTATT
CCCACTGCTCAAAGATGCCGGAGAGGGCGTGCCTGCGAGAGGTGTATGAG
TTTGGGAAGAGCTGGGATCAGGGCGTTCTGGCTGCAATGCACGTGGCAGG
CAGCTACAGGGCAGATGCGGCCAGGGACTATGACAGGTATGGTTATGACA
GATATGATCGCTGGTGA
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Coding sequence (CDS) from alignment at Contig_88:93581..94847-

>mRNA_11021 ID=mRNA_11021|Name=jgi.p|Trimin1|337240|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1197bp|location=Sequence derived from alignment at Contig_88:93581..94847- (Tribonema minus UTEX_B_3156 )
ATGCCGTTCGTGTGCGCTTGTGGTATCCAGCAGGGAGACGGAGCATCAGT
CGATGGAGTTGTAGCTACGTTGGTGTGCATTTCGTGCTGCAAGGGAGGCA
GCGATCGCGCGCCGAAGGTGAACCGGCGCGCTGCGCTTGAGCTGGTGTCA
GCTTCAGCTCTCGACCGGCTTGGCTATCAGAAGAATCGAAACCGTAAAAA
AACGAAGGCTTTACATCTGCGGCTGTACTTGAAGGCGGAGGTCACGGCAC
TAGCACTCCATGCGCAAAATGTCAAGAAAGCCATGGCCGAGGAGCGCCAG
CGGCAGCTCTCATTCTCCATCGAAGAGGTCCCTGCATCTCTGCGGGACTA
CGTGCTCGAGGACTTCCTGCACCACGTGAAGCGCCCCAAGACTTCAAACA
GGAGGGTGGAGCAGCGCCACAAGGCTGCTCGACTGGCGACGCAGGCGGCG
CTCATCTTGTACAAGGGCCCCATAGTTCCCCTGGCGAACTTCTGCCTGGA
AAGGCCCCTGTTGAAGCAGCCTGCAGTTGTCGCGTCACGTGTCTCGCTTC
ACTCGGATCTGCGCGACTCCGCCCTTCCACGCGAGGGCGTGCGCATCGCG
ACATTCCTCGCCACGATGCACAGGCAAATGGCATGCATCAGCATCCCTGC
ACTGGAGGCGGCGCTCGACGCAGCTCTGGCGAACCGCAAAGAGTCTCTCA
GGGTCGAGGTGATCCGCAGCGGCGGCGGCGCGGAGTGGGTCGATGACCCG
GCCTGCGAGCGCCGGCTGGAGCGGTTCATGACACACATGCACATCGACGC
TGCGGAAACAGCTGCGAAGATTGTTGCGTTCCACCGCACGCGCGGGGACG
CCGCCGCGCGCAGAGCGCTGCTGCAGACGGCCATGGACAGGAGGCGGGTG
GCGCTGTGCAGCGACTCCAAATTCTGCGCGTCCTTCATCAATGGAACCGT
TGATGTGGACCCGGAGGAGGTGGCTGCCATCGCGGACATCACAGCCCGTA
TATTTTTGAAGGGGGGGCACATTCTGTATTCCCACTGCTCAAAGATGCCG
GAGAGGGCGTGCCTGCGAGAGGTGTATGAGTTTGGGAAGAGCTGGGATCA
GGGCGTTCTGGCTGCAATGCACGTGGCAGGCAGCTACAGGGCAGATGCGG
CCAGGGACTATGACAGGTATGGTTATGACAGATATGATCGCTGGTGA
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