mRNA_11014 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172064
Unique NamemRNA_11014
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: A0A836C7D9_9STRA (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7D9_9STRA)

HSP 1 Score: 489 bits (1260), Expect = 1.630e-174
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query:    1 SLRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            SLRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL
Sbjct:    1 SLRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 258          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: D8LFB6_ECTSI (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB6_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 2.300e-93
Identity = 151/259 (58.30%), Postives = 196/259 (75.68%), Query Frame = 1
Query:    1 SLRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASE-AGGFMTGSIVNVDGGHLVSNL 774
            SL  ++ LVTGASSGLG HFA+TLA HGAKV VAARRV++L  LV EL   G  +A +CAVRMDV+D  SI+A + +      +Q LGPI +LVNNAGVAV  P+L+QT  +W +V+DTNL GP+LVAQAVAR MV++K  GSIINISSV+ + PS  +  Y +SKAGL HLT+VLALEWAR+GIRVN++ PGY  T+MN DFF++    R++  IP RR G P +LDG+LL++ASE A  +MTGS++ +DGG ++S+L
Sbjct:    9 SLAGKLCLVTGASSGLGMHFARTLANHGAKVAVAARRVDRLDALVEELTLGG--AAGVCAVRMDVRDETSIKAGVKQV-----EQILGPIDVLVNNAGVAVQSPSLKQTRREWEKVLDTNLVGPFLVAQAVARSMVRDKRSGSIINISSVSSMVPSSGLAAYCSSKAGLTHLTKVLALEWARHGIRVNAVCPGYFKTEMNSDFFDTPNGDRIVKAIPMRRLGDPSELDGLLLMLASERASSYMTGSVLTLDGGIMLSHL 260          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: A0A3N1M7B4_9PROT (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1M7B4_9PROT)

HSP 1 Score: 267 bits (682), Expect = 1.230e-86
Identity = 149/258 (57.75%), Postives = 184/258 (71.32%), Query Frame = 1
Query:    1 SLRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            SL  ++ALVTGASSGLGRHFA+TLAA GA+V VAARR ++LQ+L  E+ + G        V +DV D  SI AA+ +         LGPI ILVNN+GVA  KPAL  T +DW  V+DTNL G +LVAQAVAR +V  K  G+I+NI+SV  +     +  YAASKAGL HLTRVLALEWAR+GIRVN+IAPGYI T++N  FF S   + VI +IPQRR G P DLDG L+L+AS+AG +MTG+ + VDGGH+VS L
Sbjct:    4 SLTDKIALVTGASSGLGRHFARTLAASGARVAVAARRTDRLQDLAREIAAAG---GQALPVALDVTDPASIDAAIARVAA-----ELGPIDILVNNSGVATAKPALETTAEDWDGVMDTNLRGAFLVAQAVARHLVAAKRPGAIVNIASVTAMRTMGQLSAYAASKAGLDHLTRVLALEWARHGIRVNAIAPGYIETEINSAFFASPAGEAVIKRIPQRRLGQPSDLDGALMLLASDAGRYMTGATIIVDGGHVVSPL 253          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: UPI00136E2646 (SDR family oxidoreductase n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI00136E2646)

HSP 1 Score: 267 bits (682), Expect = 1.230e-86
Identity = 142/257 (55.25%), Postives = 185/257 (71.98%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            +R + AL+TGA SGLGRHFA TLAA G +V +  RRVE  + +  E+++ G    D   V MDV   E+I AA   A       ALGPI+I++NNAGVA+ + AL  + DDW+ VID NL G W VAQA AR M  +  GGSI+NI+S+ G+  + ++  YA +KAGL+HLTR LALEWARYGIRVN++APGYI TD+NR FF++D  Q++IA++PQRR G   DLDG LLL+AS+A  FMTGS+++VDGGHLVS+L
Sbjct:    5 VRGRTALITGAYSGLGRHFAVTLAAAGVRVALCGRRVELGETVAEEIRTAG---GDALVVGMDVTQTEAIAAAFDTAHA-----ALGPISIVINNAGVAMTRAALDLSEDDWQSVIDVNLNGAWRVAQAAARHMRAHDHGGSIVNIASILGVRVASHVAAYATAKAGLIHLTRALALEWARYGIRVNALAPGYIATDLNRAFFDTDAGQKLIARVPQRRLGQLADLDGPLLLLASDASAFMTGSVIDVDGGHLVSSL 253          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: UPI0002DF36A6 (SDR family oxidoreductase n=1 Tax=Cupriavidus sp. BIS7 TaxID=1217718 RepID=UPI0002DF36A6)

HSP 1 Score: 266 bits (680), Expect = 3.320e-86
Identity = 142/257 (55.25%), Postives = 182/257 (70.82%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            L+ +VALVTGA  GLG HFAKTLA  G KV +A RRV + + ++  L+ QG      C V +DV+D  S++AA   AR     + LGPI I+VN+AG+A   PAL  T DDW+RVIDTNL G W VAQ  AR M    +GGSIINI+S+ G+     +P Y A+KAGL+HLT+ LALEWAR+GIRVN+IAPGY  TD+NRDFFE++  Q ++ +IPQRR G P  LDG LLL+AS+A  +MTG+++ VDGGH+VS L
Sbjct:   14 LQGRVALVTGAFGGLGLHFAKTLARAGCKVALAGRRVAEGEAVLAALREQGATG---CVVALDVRDPASVEAAFEAAR-----RELGPIDIVVNSAGIATTGPALAVTEDDWQRVIDTNLNGAWRVAQCAARMMRDTGNGGSIINIASILGMRVLQQVPAYTAAKAGLIHLTQALALEWARHGIRVNAIAPGYFETDINRDFFETESGQALVRRIPQRRLGQPAQLDGALLLLASDASSYMTGTVLPVDGGHMVSTL 262          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: A0A521R0Q0_9HYPH (Glucose 1-dehydrogenase n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521R0Q0_9HYPH)

HSP 1 Score: 265 bits (678), Expect = 5.290e-86
Identity = 148/257 (57.59%), Postives = 179/257 (69.65%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            L  +VALVTGASSGLG HFA+TLA  GA V +AARR ++L  L  ELQ  G   A   AV +DVQ  +SI AA  K      + ALGP+ ILVNNAG+++ KPAL     DW  V+DTNL G WL+ QA  R  V  K  GSI+NI+S+ GL     +  Y ASKAGL+HLTR LA+EWARY IRVN+I PGYI T+MN DF+++   QR+I +IPQRR G PE LDG LLL+ASEAG FMTGS++ VDGGH VS+L
Sbjct:    7 LSGKVALVTGASSGLGVHFARTLAEAGASVAIAARRADRLASLQAELQQGG---AKAVAVDLDVQSADSIAAAYEKV-----EAALGPLDILVNNAGISIVKPALDMPEADWDAVVDTNLRGAWLMTQAAGRRWVAAKRPGSIVNIASILGLRTIGQVAPYNASKAGLIHLTRALAMEWARYQIRVNAICPGYIETEMNSDFWKTPGGQRLIDRIPQRRIGQPEHLDGALLLLASEAGAFMTGSVITVDGGHTVSSL 255          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: A0A521R3Z0_9HYPH (Glucose 1-dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521R3Z0_9HYPH)

HSP 1 Score: 262 bits (670), Expect = 8.650e-85
Identity = 143/257 (55.64%), Postives = 181/257 (70.43%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            L  +VALVTGASSGLG HFA+TLA  GA V++AARR ++L  L  ELQ  G   A   AV +DVQ  E++ AA  +A     + ALGP+ I+VNNAG+++ KPAL     DW  V+DTNL G WLVAQ   +  V  K  G+I+NI+S+ GL     +  Y ASKAGL+HLTR LA+EWAR+ IRVN+I PGYI T+MN DF+++   QR+I +IPQRR G PE LDG LLL+ASEAG FMTGS++ VDGGH V++L
Sbjct:    7 LSGKVALVTGASSGLGVHFARTLAEAGAAVVLAARRADRLASLQAELQKNG---AKATAVTLDVQSGEAVAAAFDQA-----ESALGPVDIVVNNAGISIVKPALEMPEQDWDSVVDTNLRGAWLVAQTAGKRWVTAKRPGTIVNIASILGLRTIGQVAPYNASKAGLIHLTRALAMEWARHQIRVNAICPGYIETEMNSDFWKTPGGQRLIERIPQRRIGQPEHLDGALLLLASEAGAFMTGSVLTVDGGHTVNSL 255          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: A0A6A7M8S5_9PROT (Glucose 1-dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6A7M8S5_9PROT)

HSP 1 Score: 260 bits (664), Expect = 7.020e-84
Identity = 145/257 (56.42%), Postives = 182/257 (70.82%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            L  +VALVTGASSGLG HFA+TLAA GA V +AARR E+L  L  ELQS  V  A   AV +DVQ  +SI AA         ++ALGPI I+VNNAG+++ KPAL   ++DW  V++TNL G WLVAQ   +  +  K  G I+NI+S+ GL     +  Y ASKAGL+HLTR LA+EWAR+ IRVN+I PGYI T+MN DF+++   QR+I +IPQRR G PE LDG LLL++SEAG FMTGS++ VDGGH VS+L
Sbjct:    7 LTGKVALVTGASSGLGVHFARTLAAAGAAVAIAARRAERLASLQAELQS-SVGKA--VAVELDVQSNDSITAAFAAV-----EEALGPIDIVVNNAGISIVKPALEMPVEDWDAVVNTNLRGAWLVAQTAGKRWLMAKRPGVIVNIASILGLRTIGQVAPYNASKAGLIHLTRALAMEWARHDIRVNAICPGYIETEMNSDFWKTPAGQRLIDRIPQRRIGKPEHLDGALLLLSSEAGSFMTGSVLTVDGGHTVSSL 255          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: UPI0005794BDB (SDR family oxidoreductase n=1 Tax=Cupriavidus sp. IDO TaxID=1539142 RepID=UPI0005794BDB)

HSP 1 Score: 259 bits (662), Expect = 1.780e-83
Identity = 139/257 (54.09%), Postives = 180/257 (70.04%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            L  +VALVTGA  GLGRHFA+TLA+ G +V +A RRV + + L+ EL+ QG A    C V +DV++ +S+QAA   AR     + LGP+ I++N+AGVA   PAL  T D W+ VIDTNL G W VAQ  AR M    +GGSI+NI+S+ GL  +  +P Y A+KAGL+HLTR LALEWAR+GIRVN++APGY  TD+NR FFE++  Q ++ +IPQRR G    LDG LLL+AS A  +MTG++  VDGGH VS L
Sbjct:   14 LEGKVALVTGAFGGLGRHFARTLASAGCRVALAGRRVAEGEALLAELREQGTAG---CVVALDVRNPDSVQAAFDAAR-----RDLGPVGIVINSAGVASTAPALEVTEDAWQTVIDTNLNGAWRVAQCAARMMRDAGTGGSIVNIASILGLRVAQQVPAYTAAKAGLIHLTRSLALEWARHGIRVNALAPGYFETDINRSFFETESGQALVRRIPQRRLGQASQLDGALLLLASSASDYMTGAVPPVDGGHTVSTL 262          
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Match: A0A2U1RW04_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RW04_9PROT)

HSP 1 Score: 258 bits (660), Expect = 2.570e-83
Identity = 141/257 (54.86%), Postives = 187/257 (72.76%), Query Frame = 1
Query:    4 LRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQSQGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVAVDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSVAGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMNRDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVDGGHLVSNL 774
            +R +VALVTGASSGLG +FA+ LA  GA V+ AARR ++L+ LV +    G A A    V +DV D  S++AA+ +A  +      GP+ ILVNNAG+A  K +L  T  DWRRV+DTNL G W +AQAVAR M+  K  GSI+NI+S+ GL  + ++  YAA+KA LV +T+ LALEWAR+GIRVN+IAPGY++T+MNRDFF S+  + +  ++PQRR G+P DLDG LLL+AS AG +MTGS+V VDGGHLV++L
Sbjct:    8 VRGKVALVTGASSGLGENFARCLAQRGAIVVAAARRADRLEALVRD---GGAAHA----VALDVTDAVSVEAAVKRAAELA-----GPLDILVNNAGIADTKASLDLTEADWRRVLDTNLDGAWRMAQAVARSMIAAKRPGSIVNIASILGLRQATHLLAYAAAKAALVQVTKSLALEWARHGIRVNAIAPGYVITEMNRDFFASEPGRAMANRVPQRRIGSPSDLDGALLLLASGAGAYMTGSVVVVDGGHLVNSL 252          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172064 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7D9_9STRA1.630e-174100.002,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (F... [more]
D8LFB6_ECTSI2.300e-9358.302,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=... [more]
A0A3N1M7B4_9PROT1.230e-8657.75NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
UPI00136E26461.230e-8655.25SDR family oxidoreductase n=1 Tax=Achromobacter ae... [more]
UPI0002DF36A63.320e-8655.25SDR family oxidoreductase n=1 Tax=Cupriavidus sp. ... [more]
A0A521R0Q0_9HYPH5.290e-8657.59Glucose 1-dehydrogenase n=6 Tax=Alphaproteobacteri... [more]
A0A521R3Z0_9HYPH8.650e-8555.64Glucose 1-dehydrogenase n=3 Tax=Alphaproteobacteri... [more]
A0A6A7M8S5_9PROT7.020e-8456.42Glucose 1-dehydrogenase n=3 Tax=Alphaproteobacteri... [more]
UPI0005794BDB1.780e-8354.09SDR family oxidoreductase n=1 Tax=Cupriavidus sp. ... [more]
A0A2U1RW04_9PROT2.570e-8354.862-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Betapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:59344..62053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172064|e_gw1.88.109.1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
KEGG rclassRC00029,RC00117
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG ModuleM00083,M00572
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG koko:K00059
EC1.1.1.100
Descriptionoxidation-reduction process
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Evalue3.77e-94
Seed ortholog2880.D8LFB6
Hectar predicted targeting categorymitochondrion
Ec32 ortholog description2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
Ec32 orthologEc-01_004330.1
TranscriptId172386
TrackFilteredModels1
ProteinId172064
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172064gene_11014Tribonema minus UTEX_B_3156 geneContig_88 59344..62053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172064Trimin1|172064|e_gw1.88.109.1Tribonema minus UTEX_B_3156 polypeptideContig_88 59344..62053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11014_3exon_11014_3Tribonema minus UTEX_B_3156 exonContig_88 59344..59613 -
exon_11014_2exon_11014_2Tribonema minus UTEX_B_3156 exonContig_88 60381..60637 -
exon_11014_1exon_11014_1Tribonema minus UTEX_B_3156 exonContig_88 61804..62053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11014CDS_11014Tribonema minus UTEX_B_3156 CDSContig_88 61804..62053 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11014 ID=mRNA_11014|Name=jgi.p|Trimin1|172064|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_88:59344..62053- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCCTCCGCTCACAGGTAGCGCTGGTCACCGGAGCCTCCTCTGGCCTGGG
AAGGCACTTTGCCAAAACGCTGGCGGCGCATGGCGCAAAGGTCATTGTCG
CAGCGAGGCGCGTGGAGAAGCTGCAGGAGCTGGTGACGGAGCTGCAGAGC
CAGGGCGTGGCGAGCGCCGACCTGTGTGCTGTGCGCATGGACGTGCAAGA
CGTGGAAAGCATACAGGCCGCGCTCACAAAGGCAAGAACAATCACAAAGC
AGCAGGCGCTGGGGCCAATCGCAATACTAGTCAACAACGCCGGCGTCGCA
GTTGACAAACCTGCGCTGCGCCAGACCCTGGACGACTGGCGCCGCGTCAT
CGACACCAACCTCACGGGGCCGTGGCTCGTGGCACAGGCGGTTGCACGCG
GCATGGTCAAGAACAAGTCCGGCGGCAGCATTATCAACATTTCCAGCGTG
GCCGGGCTAGGGCCGTCGCCGTATATGCCCGGCTACGCGGCCAGCAAGGC
GGGGCTGGTCCACCTGACGCGCGTCCTCGCGCTCGAGTGGGCGCGCTACG
GCATCCGCGTCAACAGCATCGCGCCGGGCTACATTGTCACCGACATGAAC
CGCGACTTCTTCGAATCCGACCAGGCGCAGAGGGTCATTGCCAAGATTCC
GCAGCGCCGCACGGGGGCCCCCGAGGATTTGGACGGCATACTGCTGCTCA
TGGCCTCCGAGGCAGGCGGTTTTATGACGGGCAGCATTGTCAATGTGGAT
GGGGGGCATCTGGTCAGCAACCTCTGA
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protein sequence of jgi.p|Trimin1|172064

>Trimin1|172064|e_gw1.88.109.1 ID=Trimin1|172064|e_gw1.88.109.1|Name=jgi.p|Trimin1|172064|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
SLRSQVALVTGASSGLGRHFAKTLAAHGAKVIVAARRVEKLQELVTELQS
QGVASADLCAVRMDVQDVESIQAALTKARTITKQQALGPIAILVNNAGVA
VDKPALRQTLDDWRRVIDTNLTGPWLVAQAVARGMVKNKSGGSIINISSV
AGLGPSPYMPGYAASKAGLVHLTRVLALEWARYGIRVNSIAPGYIVTDMN
RDFFESDQAQRVIAKIPQRRTGAPEDLDGILLLMASEAGGFMTGSIVNVD
GGHLVSNL*
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mRNA from alignment at Contig_88:59344..62053-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11014 ID=mRNA_11014|Name=jgi.p|Trimin1|172064|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2710bp|location=Sequence derived from alignment at Contig_88:59344..62053- (Tribonema minus UTEX_B_3156 )
TCCCTCCGCTCACAGGTAGCGCTGGTCACCGGAGCCTCCTCTGGCCTGGG AAGGCACTTTGCCAAAACGCTGGCGGCGCATGGCGCAAAGGTCATTGTCG CAGCGAGGCGCGTGGAGAAGCTGCAGGAGCTGGTGACGGAGCTGCAGAGC CAGGGCGTGGCGAGCGCCGACCTGTGTGCTGTGCGCATGGACGTGCAAGA CGTGGAAAGCATACAGGCCGCGCTCACAAAGGCAAGAACAATCACAAAGC GTGCATATCATGTATGCAAGCATTGAGAAAATTACACAAGGCGCTTGCAT GCGCATCGTCCTATGTCACTGGCTCCAACATTGCCAAGCACGCATTTACA GTCGCACATCAACAAGGTTCCGGTGTTTTCTGCTTGCGCCGGTTCCAGGC CCCAAGCCGCCCTTCCTCGGCGCAACGATACGACTTCTTGTGATATACGA TTGCCTGCACTGACTTCAGCATGTAGTTGCAGTTGCGGCAGGCGCGCAGC CCCGTTGTGCCACCCTTACGAACAAAAAATGGCTTTGGTTGGGCTTTTTT TGACCACGCGTCAGAAGCACAGGCTCCACTGGAAGGCTGTGCTGAGCTAC CGCCACCGGCCATACTGTAGTCATGACAACAGAGTGTATTGCGTTGACAA TATCGTAAGCACGGACTCACGCCCATCTGTCAATGCCTTCGCTTCGCCGT AGCGAGACGGGCCCTGGGGCAACCAGCAATACTCGCAGACGCCGCCGCCT AGACACTCAACATAGTCTGCCACATCATCGCTGGGAAGCAGACTCTAGGC TTGTCGCGATACTGGGCATCAGCGCTCGGTCGCCTTACAAACTAAATATT TGCTCACTCCACTGCTCAATCTGCTGCTGCCTCACTCCACTGCTCAATCT GCTGCTGCGTGGACATAATTGCATGAAGAGGCGGCCGTGGGGCCCATTGC GACACTGGCCAACGACACCGTGCTGTCATCAGTTATTATTTGAACTACAG TACATCGAATGGTGAATCAGCTCATGTCCATTCCCAGCCCTGATCCGCTG CGCCACCGCAGGGAGAGCAGGCCCAGGGGCCCATCGTGATACTCGTCAAC TGTGCGGTAACTTCCAACCGATTATTTGACATGAATCACTGCTTGGTTCT TATTCATCCACCGCTCTCGCCACAACCATAGGATATGATTAACTGCTCGA TACACTGCTCGATCTGCTGCGTAATCATAATTTGCAGGGGGAGCAGGCCC TGGGGCCCATCGTGACACTGGTCAACAAGGCGATCATTCCAAATCGACTC ATTTGACACGATTCACTGCTTGGTTCTCGTGTACTCATCTCTCCCGCCGC ATCTGTAAGACATGATTCAGTGCTCGTTCCTAATGAATTCACCGCTCTCG CCGCAACCGCAGGGAGAGCAGGCGCTGGGGCCAATCGCAATACTAGTCAA CAACGCCGGCGTCGCAGTTGACAAACCTGCGCTGCGCCAGACCCTGGACG ACTGGCGCCGCGTCATCGACACCAACCTCACGGGGCCGTGGCTCGTGGCA CAGGCGGTTGCACGCGGCATGGTCAAGAACAAGTCCGGCGGCAGCATTAT CAACATTTCCAGCGTGGCCGGGCTAGGGCCGTCGCCGTATATGCCCGGCT ACGCGGCCAGCAAGGCGGGGCTGGTGAGTGAGATTGCCATGCATGTGGAG TTGAAGTTATTAGTTGAAGTTTGGGGCTCGTGGCACAGGCCATCGCCCGC GGCATGGTGAAGAACAAGGCCGGCGGCAGTATCAGAATAGATTAAATTAG TTCTAAATAAGTTCATTGTGGCAAGCACACATCCCCATTTGTCGCTGAGC ACTGTGACAGGTCCGCCTCACGCGCGTCCTCGCGCTGGAGTGGGCGCGCT ACTGCGTACGCGTCAACAGCATCGCGATGGCAGTTTCATCATCACATCAT TTTGCTTGTTCATATTTTCAGCAGACATATTGACAGTTTCGGTCCTTGAA ATTTTGCCTTTTTTCTTCCTTATTTTGCCGCGCTTGCCGCCAACCGCTGC TTACCAAAGTAAACTGCAATTATATACCACACAAATTCTTCTTTTTTTCG AGAACACATTTCCGTTTGCTGTTGAGCGTTGCCATCACCAGGTCCACCTC ACGCGCGTCCTCGCGCTCGAGTGGGCAAACAAAACAGGATGCAAAATGAG TCATGACCTCGAAATCGCAATTCATCATCCCACTCATTCATGAAATAGAA GAATGACATGCATCGGGGAAACTAAGCAGAAGCGGCCCTCGCAAGCACGC TCCTCGTCCACTGCTGACCACTGGCTGGCTGTGCTGCGCTTGCCGCCAAA CGCTGCCATCACCAATGTCGAAGGTCATCAAAGATTACACGCAAATTTTT TGTTTTGAAGCACGTTTCCGTTTGCTGAGCACTGTGACAGGTCCACCTGA CGCGCGTCCTCGCGCTCGAGTGGGCGCGCTACGGCATCCGCGTCAACAGC ATCGCGCCGGGCTACATTGTCACCGACATGAACCGCGACTTCTTCGAATC CGACCAGGCGCAGAGGGTCATTGCCAAGATTCCGCAGCGCCGCACGGGGG CCCCCGAGGATTTGGACGGCATACTGCTGCTCATGGCCTCCGAGGCAGGC GGTTTTATGACGGGCAGCATTGTCAATGTGGATGGGGGGCATCTGGTCAG CAACCTCTGA
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Coding sequence (CDS) from alignment at Contig_88:59344..62053-

>mRNA_11014 ID=mRNA_11014|Name=jgi.p|Trimin1|172064|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_88:59344..62053- (Tribonema minus UTEX_B_3156 )
TCCCTCCGCTCACAGGTAGCGCTGGTCACCGGAGCCTCCTCTGGCCTGGG
AAGGCACTTTGCCAAAACGCTGGCGGCGCATGGCGCAAAGGTCATTGTCG
CAGCGAGGCGCGTGGAGAAGCTGCAGGAGCTGGTGACGGAGCTGCAGAGC
CAGGGCGTGGCGAGCGCCGACCTGTGTGCTGTGCGCATGGACGTGCAAGA
CGTGGAAAGCATACAGGCCGCGCTCACAAAGGCAAGAACAATCACAAAGC
AGCAGGCGCTGGGGCCAATCGCAATACTAGTCAACAACGCCGGCGTCGCA
GTTGACAAACCTGCGCTGCGCCAGACCCTGGACGACTGGCGCCGCGTCAT
CGACACCAACCTCACGGGGCCGTGGCTCGTGGCACAGGCGGTTGCACGCG
GCATGGTCAAGAACAAGTCCGGCGGCAGCATTATCAACATTTCCAGCGTG
GCCGGGCTAGGGCCGTCGCCGTATATGCCCGGCTACGCGGCCAGCAAGGC
GGGGCTGGTCCACCTGACGCGCGTCCTCGCGCTCGAGTGGGCGCGCTACG
GCATCCGCGTCAACAGCATCGCGCCGGGCTACATTGTCACCGACATGAAC
CGCGACTTCTTCGAATCCGACCAGGCGCAGAGGGTCATTGCCAAGATTCC
GCAGCGCCGCACGGGGGCCCCCGAGGATTTGGACGGCATACTGCTGCTCA
TGGCCTCCGAGGCAGGCGGTTTTATGACGGGCAGCATTGTCAATGTGGAT
GGGGGGCATCTGGTCAGCAACCTCTGA
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