mRNA_11007 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172039
Unique NamemRNA_11007
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172039 vs. uniprot
Match: A0A835YRF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRF1_9STRA)

HSP 1 Score: 230 bits (587), Expect = 5.840e-77
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 AVSCGYLSVLQWLTSVDGGDPLWHCWTCGDIASRGDLAMLRWARSAGCPWGICTIEHAIRIPLASKDLILEALTWALDNGCPCNSDERALYRSLQLAVPRGSHR 312
            AVSCGYLSVLQWLTSVDGGDPLWHCWTCGDIASRGDLAMLRWARSAGCPWGICTIEHAIRIPLASKDLILEALTWALDNGCPCNSDERALYRSLQLAVPRGSHR
Sbjct:    1 AVSCGYLSVLQWLTSVDGGDPLWHCWTCGDIASRGDLAMLRWARSAGCPWGICTIEHAIRIPLASKDLILEALTWALDNGCPCNSDERALYRSLQLAVPRGSHR 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YRF1_9STRA5.840e-77100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_88contigContig_88:2039..2353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172039|e_gw1.88.9.1
CAZyGH16
BRITEko00000,ko04131
KEGG koko:K21850
Descriptionspectrin binding
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Evalue0.000313
Seed ortholog2903.EOD15902
Hectar predicted targeting categorysignal peptide
TranscriptId172361
TrackFilteredModels1
ProteinId172039
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172039gene_11007Tribonema minus UTEX_B_3156 geneContig_88 2039..2353 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11007_1exon_11007_1Tribonema minus UTEX_B_3156 exonContig_88 2039..2353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11007CDS_11007Tribonema minus UTEX_B_3156 CDSContig_88 2039..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172039Trimin1|172039|e_gw1.88.9.1Tribonema minus UTEX_B_3156 polypeptideContig_88 2039..2353 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11007 ID=mRNA_11007|Name=jgi.p|Trimin1|172039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_88:2039..2353+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGTCAGCTGCGGGTACCTGAGTGTACTGCAGTGGCTCACCTCCGTCGA
CGGTGGCGATCCTTTGTGGCACTGTTGGACGTGCGGCGACATAGCTAGCC
GGGGCGACCTGGCCATGCTCAGGTGGGCCCGCAGCGCGGGCTGCCCCTGG
GGCATCTGTACGATCGAGCATGCAATCCGGATCCCTCTCGCGTCCAAAGA
CCTCATACTCGAGGCTTTGACGTGGGCGCTCGACAATGGCTGCCCGTGCA
ATTCCGATGAGCGCGCTCTGTATCGCAGCTTGCAGCTCGCGGTGCCACGA
GGCTCGCACCGGTGA
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protein sequence of jgi.p|Trimin1|172039

>Trimin1|172039|e_gw1.88.9.1 ID=Trimin1|172039|e_gw1.88.9.1|Name=jgi.p|Trimin1|172039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
AVSCGYLSVLQWLTSVDGGDPLWHCWTCGDIASRGDLAMLRWARSAGCPW
GICTIEHAIRIPLASKDLILEALTWALDNGCPCNSDERALYRSLQLAVPR
GSHR*
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mRNA from alignment at Contig_88:2039..2353+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11007 ID=mRNA_11007|Name=jgi.p|Trimin1|172039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_88:2039..2353+ (Tribonema minus UTEX_B_3156 )
GCAGTCAGCTGCGGGTACCTGAGTGTACTGCAGTGGCTCACCTCCGTCGA
CGGTGGCGATCCTTTGTGGCACTGTTGGACGTGCGGCGACATAGCTAGCC
GGGGCGACCTGGCCATGCTCAGGTGGGCCCGCAGCGCGGGCTGCCCCTGG
GGCATCTGTACGATCGAGCATGCAATCCGGATCCCTCTCGCGTCCAAAGA
CCTCATACTCGAGGCTTTGACGTGGGCGCTCGACAATGGCTGCCCGTGCA
ATTCCGATGAGCGCGCTCTGTATCGCAGCTTGCAGCTCGCGGTGCCACGA
GGCTCGCACCGGTGA
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Coding sequence (CDS) from alignment at Contig_88:2039..2353+

>mRNA_11007 ID=mRNA_11007|Name=jgi.p|Trimin1|172039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_88:2039..2353+ (Tribonema minus UTEX_B_3156 )
GCAGTCAGCTGCGGGTACCTGAGTGTACTGCAGTGGCTCACCTCCGTCGA
CGGTGGCGATCCTTTGTGGCACTGTTGGACGTGCGGCGACATAGCTAGCC
GGGGCGACCTGGCCATGCTCAGGTGGGCCCGCAGCGCGGGCTGCCCCTGG
GGCATCTGTACGATCGAGCATGCAATCCGGATCCCTCTCGCGTCCAAAGA
CCTCATACTCGAGGCTTTGACGTGGGCGCTCGACAATGGCTGCCCGTGCA
ATTCCGATGAGCGCGCTCTGTATCGCAGCTTGCAGCTCGCGGTGCCACGA
GGCTCGCACCGGTGA
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