mRNA_11005 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149745
Unique NamemRNA_11005
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A835YJ23_9STRA (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ23_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.710e-32
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG
Sbjct:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 57
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: UPI00174DE9BE (polyubiquitin-like n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174DE9BE)

HSP 1 Score: 60.5 bits (145), Expect = 5.000e-10
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDT++ +K  I+    +P  Q  L+F GKQL  GC+LSDY I+ ES +H +LRLR G
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGCILSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A369KJ43_HYPMA (Uncharacterized protein n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369KJ43_HYPMA)

HSP 1 Score: 60.8 bits (146), Expect = 2.160e-9
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 DTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            DTV  +K  ++G   +P++Q  L+F GKQL  G LLSDY IKHES +H ILRL  G
Sbjct:  389 DTVYDIKAVVQGREGMPLEQQRLIFGGKQLEDGRLLSDYNIKHESTIHVILRLSGG 444
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A8C9PIF7_SPEDA (Ubiquitin-like domain-containing protein n=1 Tax=Spermophilus dauricus TaxID=99837 RepID=A0A8C9PIF7_SPEDA)

HSP 1 Score: 56.6 bits (135), Expect = 4.170e-9
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDT++ +K  I+     P  Q  L+F GKQL  GC+LSDY I+ ES  H +L LR G
Sbjct:   33 SDTIENMKAKIQDKKVFPPDQQRLIFAGKQLEDGCILSDYNIRKESAQHLVLHLRGG 89
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: T1NJN3_TRIUA (Ubiquitin-like domain-containing protein n=1 Tax=Triticum urartu TaxID=4572 RepID=T1NJN3_TRIUA)

HSP 1 Score: 55.8 bits (133), Expect = 4.730e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDT+D +K  I+    +P  Q  L+F GKQL  G +L+DY I+ ES +H +LRLR G
Sbjct:   10 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRMLTDYNIQKESTLHLVLRLRGG 66
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A507DEE6_9FUNG (Ubiquitin-like domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DEE6_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 7.770e-9
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDTV+ LK+ +EG   +P  +L L+  GKQL  G +LSDY I+ ES VH   RLR G
Sbjct:   45 SDTVEALKQRLEGREGIPSHELRLIHSGKQLEDGHILSDYAIERESTVHLSSRLRGG 101
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A8H5G3U0_9AGAR (Uncharacterized protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5G3U0_9AGAR)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            S TVD L+E +   T +P  +  LL+ GKQL  G LLSDYGI  ES +H +LRLR G
Sbjct:  223 SGTVDQLQEQVYQKTLIPASEQRLLYAGKQLEPGRLLSDYGILKESTLHLVLRLRGG 279
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A6A4SGQ4_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SGQ4_SCOMX)

HSP 1 Score: 56.2 bits (134), Expect = 2.170e-8
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDT++ +K  I+     P  Q  L+F GKQL  G +LSDY I+ ESV+H +LRLR G
Sbjct:   96 SDTIENVKAKIQDKETTPPHQQRLIFAGKQLKDGRILSDYNIQKESVLHLVLRLRGG 152
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A5A7PU00_STRAF (Ubiquitin family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PU00_STRAF)

HSP 1 Score: 54.7 bits (130), Expect = 3.350e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SD +D +K  I+    +P  Q  L+F GKQL  G +LSDY I+ ES +H +LRLR G
Sbjct:   20 SDPIDNVKAKIQDKEGIPSDQQRLIFAGKQLEDGRILSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A4Y7TAI2_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TAI2_9AGAR)

HSP 1 Score: 57.4 bits (137), Expect = 3.560e-8
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHFILRLRAG 171
            SDT+D  K  I+    +P  Q  L+F GKQL  G LLSDYG+++E V++ ++RLR G
Sbjct:   97 SDTIDNFKAKIQDREGIPADQQRLIFAGKQLEDGRLLSDYGLRNEDVLYLVIRLRGG 153
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A835YVJ7_9STRA (60S ribosomal protein L29 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.620e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK 156
            LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK
Sbjct:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKNPRK 52
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: D8LU40_ECTSI (60S ribosomal protein L29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU40_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            ++QK+HTGRNA+ KDH NGIKKAP  KY S+KGMDPKFLRNQ++AKK N
Sbjct:    2 VKQKHHTGRNATFKDHVNGIKKAPNHKYKSMKGMDPKFLRNQKFAKKYN 50
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A2P6TDJ6_CHLSO (60S ribosomal protein L29 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDJ6_CHLSO)

HSP 1 Score: 65.1 bits (157), Expect = 6.350e-13
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKK 141
            KNHT  N SAK H NGIKK  R +Y+S KGMDPKFLRNQRYAKK
Sbjct:    5 KNHTAANQSAKAHKNGIKKPQRQRYSSRKGMDPKFLRNQRYAKK 48
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A7I4A457_PHYPA (60S ribosomal protein L29 n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A457_PHYPA)

HSP 1 Score: 65.5 bits (158), Expect = 8.050e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N S K+H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:   20 KNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHN 65
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A2K1JGS4_PHYPA (60S ribosomal protein L29 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JGS4_PHYPA)

HSP 1 Score: 65.1 bits (157), Expect = 9.600e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N S K+H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:   13 KNHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKKHN 58
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A5B8MJV1_9CHLO (60S ribosomal protein L29 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJV1_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N S K+H NGIKK  + KY+S KGMDPKFLRNQRY KK N
Sbjct:    5 KNHTAHNQSYKNHRNGIKKQKKQKYSSTKGMDPKFLRNQRYCKKHN 50
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: V4LZQ9_EUTSA (60S ribosomal protein L29 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LZQ9_EUTSA)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N SAK H NGIKK  R ++ S KGMDPKFLRNQRYA+K N
Sbjct:    5 KNHTAHNQSAKAHKNGIKKPRRHRHTSTKGMDPKFLRNQRYARKHN 50
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: A0A067C325_SAPPC (60S ribosomal protein L29 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C325_SAPPC)

HSP 1 Score: 63.5 bits (153), Expect = 2.980e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 LQQKNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            ++QKNHT RN + K H NGI+K  + +Y+S KG+DPKFLRNQR+AKK N
Sbjct:    2 VKQKNHTARNQTVKAHKNGIRKPHKHRYHSTKGLDPKFLRNQRFAKKYN 50
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: U9SIP6_RHIID (60S ribosomal protein L29 n=4 Tax=Glomeraceae TaxID=36751 RepID=U9SIP6_RHIID)

HSP 1 Score: 63.5 bits (153), Expect = 3.370e-12
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKK 144
            KNHT  N + K H NGIKK   ++Y SLKG+DPKFLRNQRYAKKK
Sbjct:    5 KNHTNHNQNRKAHRNGIKKPKTYRYPSLKGVDPKFLRNQRYAKKK 49
[Close]
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Match: D8TVB8_VOLCA (60S ribosomal protein L29 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TVB8_VOLCA)

HSP 1 Score: 63.2 bits (152), Expect = 3.680e-12
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 KNHTGRNASAKDHANGIKKAPRFKYNSLKGMDPKFLRNQRYAKKKN 147
            KNHT  N + K H NGIKK  + KY S KGMDPKFLRNQRYAKK N
Sbjct:    5 KNHTAHNQNRKAHRNGIKKPQKHKYASRKGMDPKFLRNQRYAKKHN 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149745 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJ23_9STRA1.710e-32100.00Ubiquitin-like domain-containing protein (Fragment... [more]
UPI00174DE9BE5.000e-1049.12polyubiquitin-like n=1 Tax=Myotis myotis TaxID=512... [more]
A0A369KJ43_HYPMA2.160e-953.57Uncharacterized protein n=1 Tax=Hypsizygus marmore... [more]
A0A8C9PIF7_SPEDA4.170e-947.37Ubiquitin-like domain-containing protein n=1 Tax=S... [more]
T1NJN3_TRIUA4.730e-947.37Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
A0A507DEE6_9FUNG7.770e-950.88Ubiquitin-like domain-containing protein n=1 Tax=S... [more]
A0A8H5G3U0_9AGAR1.420e-852.63Uncharacterized protein n=1 Tax=Tetrapyrgos nigrip... [more]
A0A6A4SGQ4_SCOMX2.170e-849.12Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A5A7PU00_STRAF3.350e-847.37Ubiquitin family protein n=1 Tax=Striga asiatica T... [more]
A0A4Y7TAI2_9AGAR3.560e-847.37Ubiquitin-like domain-containing protein n=1 Tax=C... [more]

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BLAST of jgi.p|Trimin1|149745 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVJ7_9STRA1.620e-28100.0060S ribosomal protein L29 (Fragment) n=1 Tax=Tribo... [more]
D8LU40_ECTSI2.690e-1773.4760S ribosomal protein L29 n=1 Tax=Ectocarpus silic... [more]
A0A2P6TDJ6_CHLSO6.350e-1375.0060S ribosomal protein L29 n=1 Tax=Chlorella soroki... [more]
A0A7I4A457_PHYPA8.050e-1371.7460S ribosomal protein L29 n=4 Tax=Physcomitrium pa... [more]
A0A2K1JGS4_PHYPA9.600e-1371.7460S ribosomal protein L29 n=2 Tax=Physcomitrium pa... [more]
A0A5B8MJV1_9CHLO1.280e-1269.5760S ribosomal protein L29 n=1 Tax=Chloropicon prim... [more]
V4LZQ9_EUTSA2.150e-1269.5760S ribosomal protein L29 n=1 Tax=Eutrema salsugin... [more]
A0A067C325_SAPPC2.980e-1261.2260S ribosomal protein L29 n=4 Tax=Saprolegniaceae ... [more]
U9SIP6_RHIID3.370e-1268.8960S ribosomal protein L29 n=4 Tax=Glomeraceae TaxI... [more]
D8TVB8_VOLCA3.680e-1269.5760S ribosomal protein L29 n=1 Tax=Volvox carteri f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:624464..624634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149745|gw1.82.74.1
Descriptioncellular macromolecule catabolic process
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Evalue1.65e-10
Seed ortholog159749.K0R691
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId150067
TrackFilteredModels1
ProteinId149745
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149745gene_11005Tribonema minus UTEX_B_3156 geneContig_82 624464..624634 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11005_1exon_11005_1Tribonema minus UTEX_B_3156 exonContig_82 624464..624634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11005CDS_11005Tribonema minus UTEX_B_3156 CDSContig_82 624464..624634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149745Trimin1|149745|gw1.82.74.1Tribonema minus UTEX_B_3156 polypeptideContig_82 624464..624634 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11005 ID=mRNA_11005|Name=jgi.p|Trimin1|149745|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_82:624464..624634- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCGGACACAGTCGACTTCCTCAAGGAGGCCATCGAAGGCGTTACGCGCCT
TCCAGTCAAGCAGCTGAGTCTTTTGTTTGAAGGCAAGCAGCTGGCGATGG
GCTGCCTACTGTCGGACTACGGGATTAAGCACGAGAGTGTTGTCCACTTC
ATTTTGCGCCTCAGAGCAGGC
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protein sequence of jgi.p|Trimin1|149745

>Trimin1|149745|gw1.82.74.1 ID=Trimin1|149745|gw1.82.74.1|Name=jgi.p|Trimin1|149745|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=57bp
SDTVDFLKEAIEGVTRLPVKQLSLLFEGKQLAMGCLLSDYGIKHESVVHF
ILRLRAG
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mRNA from alignment at Contig_82:624464..624634-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11005 ID=mRNA_11005|Name=jgi.p|Trimin1|149745|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_82:624464..624634- (Tribonema minus UTEX_B_3156 )
TCGGACACAGTCGACTTCCTCAAGGAGGCCATCGAAGGCGTTACGCGCCT
TCCAGTCAAGCAGCTGAGTCTTTTGTTTGAAGGCAAGCAGCTGGCGATGG
GCTGCCTACTGTCGGACTACGGGATTAAGCACGAGAGTGTTGTCCACTTC
ATTTTGCGCCTCAGAGCAGGC
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Coding sequence (CDS) from alignment at Contig_82:624464..624634-

>mRNA_11005 ID=mRNA_11005|Name=jgi.p|Trimin1|149745|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=171bp|location=Sequence derived from alignment at Contig_82:624464..624634- (Tribonema minus UTEX_B_3156 )
TCGGACACAGTCGACTTCCTCAAGGAGGCCATCGAAGGCGTTACGCGCCT
TCCAGTCAAGCAGCTGAGTCTTTTGTTTGAAGGCAAGCAGCTGGCGATGG
GCTGCCTACTGTCGGACTACGGGATTAAGCACGAGAGTGTTGTCCACTTC
ATTTTGCGCCTCAGAGCAGGC
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